Array 1 2069708-2069160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2069707 37 100.0 34 ..................................... ACAACTGCGACGATATCAGATCCATATATTTCAG 2069636 37 100.0 38 ..................................... AACCCTGCATAAAATGAGGGTTCCCCACATTTGGGGCA 2069561 37 100.0 37 ..................................... TGTTGGACATACTTCAATCCCCCTTCGAGTTTGGGGA 2069487 37 100.0 35 ..................................... TTTAGCTCATAAGCCGATTTAATATTTTTATTTAT 2069415 37 100.0 36 ..................................... AGTTATTGTAACCGTTATCATGTTTCCTATTCTTTT 2069342 37 100.0 37 ..................................... CAAGCAGGGTTTCTCTTTCCGGTATTCCTATCCTCAG 2069268 37 100.0 35 ..................................... TAATCTTCTTGTCTTCTGGCAAATTGTTTTCCAAA 2069196 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 36 GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : TTCTTCTTTATGCCGTCCCGTGCAGATATAGCGTCTTTCGATCAATTCGACGTGGAATCGAACCAATGGCTTCTGAATACGATTAGTCTTAATGAAATAAATTATAGTGCAGGTGAATTCAAAAAATATTCCACGGTACTGCAGTCATTAAGGCGCCATCTGGAAAACTCTTCTAAAAAGGTTGTCAATTTCCAGTTTCCGAACCCTCAAGGTCCGAAATTCAGTTTAATTATCAATAGGCTTGAATGTACACAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCATCCCAATGTACATTAATATACATTATTAAAATATAATATCAACGCCAAGCGGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACTATAGTGTGGCAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAATAAAGGCTTAATAGGGCGTTTTGAAACCCT # Right flank : CTCTTTTGATTTAACATTCAAAAAATATAGATATTGCTTAATATTTTTTTTATTTATATACATTTAAAATTTTAAAAATATTTAGTAATGTTTATATATATCTCAAATAAACAACTCTTTAATGTCTGAAATTGATACCGATAGCGATTATCTTTTTCTAAAAGTAGGGGCTTTACTACACGATATAGGCCATGTTGTCCCAGGTCTCGAAGGTGAGGAGAAAGGGCATGCTGAGAGGGGATTTGAATTCCTCAGCTCATTTGCAAGTACGGAATTATTTTCGCTGTTTGCCAAGTATCACCATGCCCTATCAATTGATGAAATTAAGGAGGAGGGGCTGAGTCAGAAATATAAGAACCTTATCTGGATGGTCAGGGAGGCTTCCCGGCTGGCAGCAGGTGATGATGGTAGTGATGGAGAAGATGCTGCTGGAAAGCACCTGTTGAGGTCTGTTTTTTCGGGGATTTCAAATATCAAGGAAGGTGTTAAAGATTCAGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 2076589-2075017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2076588 37 100.0 38 ..................................... TGCCGTATTATGGTGATTCTCGCGATTTTCCAAAGGAA 2076513 37 100.0 37 ..................................... CATGATGAAAAATACAAACATTAGAGCAGCCATCGTC 2076439 37 100.0 36 ..................................... CCTGTTCATTTTTTGCAGTCCAAAGATAAACACCTA 2076366 37 100.0 38 ..................................... GACATTCTTGCTCTCAAGAAGCTCCTGTACATCCCATA 2076291 37 100.0 33 ..................................... CCCTATCGGGTTTTCAAAAAGCTTGCAGTTACA 2076221 37 100.0 40 ..................................... ATTATTGCGTCGGGGTCGTATTTTTCAACGATCTTACCTA 2076144 37 100.0 36 ..................................... AATACTCAATACTCAATACTCAACACTCTACAAAAC 2076071 37 100.0 35 ..................................... TCTAACACGCAATCGCGATTAATATCCGACATGCC 2075999 37 100.0 37 ..................................... CTGGACATATCTACCAATAAAGATGGGTCGTTCGACC 2075925 37 100.0 36 ..................................... TCAGGGAGAATCACTTCTTGACCTACTGTATACCAA 2075852 37 100.0 35 ..................................... GGTGCAGCACCGGTTGTATGTATGCTACTTCGTCC 2075780 37 100.0 34 ..................................... ATCGGCACGAAGGTCTTTAATTTCTTTGTTTGAT 2075709 37 100.0 33 ..................................... GCTTAATAGCCCTCCGTTTAAAACGGCACTATA 2075639 37 100.0 36 ..................................... CAGGAATCCTGGTAGAGAACAACACAATTGAAAATA 2075566 37 100.0 38 ..................................... TTTATTATGTCTCCCGGTTCGATGGTCCTGGGTGGACC 2075491 37 100.0 33 ..................................... CTGATCCCCATTCTAGACCGTATGCTTGGACTA 2075421 37 100.0 36 ..................................... TTACAGGACAAAGTGTCCCATATGCATCTCCTCTCT 2075348 37 100.0 36 ..................................... TTTACTACAACTCTCGTCACCTTATCATCGAATGAA 2075275 37 100.0 36 ..................................... ATTTTAGGGTGGTAATGCAACTTATTCTTACAGAAG 2075202 37 100.0 38 ..................................... GGCCTCTTATGTTTGCGAATCCATTTCTGTTTTTTTAA 2075127 37 97.3 37 ...................................T. AAATATTCTGGGTTAATGACCATGTGTCTTTCCAGGA 2075053 37 73.0 0 ....C.......T..........G...A..CCAG.TT | ========== ====== ====== ====== ===================================== ======================================== ================== 22 37 98.7 36 GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : TTCTTCTTTATGCCATCCCGTGCAGATATAGCGTCTTTCGATCAATTCGATGGGAAATCGAACCAATGGCTTCTGAATGCGATTAATCTTCATGAAATAAATTATAGTGCAGGTGAATTCAAAAAATATTTCACGGTACTGCAGCTATTAAGGCGTCATCTGGAAAACTCTTCTAAAAATGTTGTCAATTTCCAGTTTCCGAACCTTCAAGGTACGAAATTCAGTTTAATTATCAATAGGCATGAATGTACACAAAATAAGCAAGTTGATTTCCGCTGATCTATCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACACCAAGCAGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCCTAGTGTAGCAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGGAAATAAAGGCATAATAGGGCGTTTTGAAACCCT # Right flank : TCTGAAAATTAATCCTAATTCTTTTTTCCAACACTTGTCTCCACAAAATTCTTGCAAACTAAAAGGCGGCATGTCACTAATTTTCTCATAAAGCCCGGCTTTTTTCATTCTCTGCGATAACGAAAAATCAGCTCTTTTTCCTGGCTTAAAAGCTGTTTTTCCGAAGAATAAGATAAGTTATCGAATCGTCAGTTGCACTCTCGAATCATTCGTCTCCAGGAATATCACAAGCGAGAGATGATTGGTAAGTAATCAATCAAAAAGGAGGAACTAAGTGATATCCTGGAAATCTATAAAAGAGTCTCAGTTAAAAGTTAAGAATTTTTCAGCCGGGATGCTGGAGAAGCAGCCTGAAAATCAGAAGAGAGTATTGAAGCATACTGGAAAGATCTGTAAGACTTGTTGGAGGGTTATACGTTGGACGGAGATTATCGTCATCATAGTCGAGCTGCTTCTCATATTCAGATGAAGCTGTACAGGGAGGCCAGCAGCAGAAAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 2232298-2233846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 2232298 32 100.0 37 ................................ ATCACAGTACATATCACGACAACGAAACTAATTTATC 2232367 32 100.0 33 ................................ AACATGGATTAAACTGATCAAACAGAAAACCGA 2232432 32 100.0 33 ................................ GTTTCCTAAGATTTCATGTTTAACGCGATAAAC 2232497 32 100.0 35 ................................ TTTTATATCTCGTTTGCTCAATTTTCTTTTATATG 2232564 32 100.0 33 ................................ CTGTAATCCCAAAATAAAAATCAACTTTTCCAC 2232629 32 100.0 35 ................................ ATCATACTGAGCAATCATCGAAAGAGCAGCATCAC 2232696 32 100.0 33 ................................ TCTAAGGATGTTATAGAAAAGATGGCGCGGGTT 2232761 32 100.0 33 ................................ TAGGTACACTTTGATCGCTCCGGAAAGCTTCTC 2232826 32 100.0 34 ................................ GATTTAGAATTTTTCAAAAACAAAGAAACTGAAC 2232892 32 100.0 38 ................................ CAACATTGAAGGGCGTTCACGGTCTATATTTGCATGTA 2232962 32 100.0 34 ................................ AATAACGATTTTTAAAAACACTGGAGCGACAAAT 2233028 32 100.0 34 ................................ CAAAATCATTAGATCTAACATGGGAATCAGCAAC 2233094 32 100.0 34 ................................ CTGCTATCGATACGATGAGGCCAACATGTCTATT 2233160 32 100.0 35 ................................ TCGATGATGCTCCGAGGGTTGGCGGAGTATATAAG 2233227 32 100.0 35 ................................ CATCGTCTGCTTTCGGAGTAGTGTATATTATCCTG 2233294 32 100.0 42 ................................ AATTCCCGTTGTGTTGAGATCAAGCCCGTCTATGAGCGTGTC 2233368 32 100.0 34 ................................ TCGTTTCATTCCAAGCTCAAACATTGTAACAGAC 2233434 32 100.0 33 ................................ ATGTCAAATTTAGCAATTGTATGAAGGCCTGAA 2233499 32 100.0 33 ................................ TCTTCTTCTTCGGAAGGTTTGAACCATATTGGA 2233564 32 100.0 34 ................................ AAATCTAAATTGGATTTGGTTTGCAAATGATGGG 2233630 32 100.0 31 ................................ ATAATTTCAATTGTGGATGACACTTTAAAAG 2233693 32 100.0 22 ................................ CAGAATAAACATTGATAATATA Deletion [2233747] 2233747 32 78.1 36 ...ATG...CG.AA.................. GGTATATAGTAAAGAATTACTCCGAAAAACAATATA 2233815 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ========================================== ================== 24 32 99.0 34 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : ACATTGATGGTTATCCGCCATTTTTTATGAATTGAGGTGATTTAAGTGATGGTATTGGTAACATATGATGTGAGTACAGAATCCGAAGGTGGAAAAAGAAGGCTGAGAAAGGTGGCAAAAGAGTGCGAAAATTACGGACAGAGGGTTCAGAATTCTGTATTTGAATGCCTTGTGGACCCTGTTCAGTTTGCACAACTTAAACATTCCTTATGTGATATCGTAGATGAGGATAAAGATAGTCTCAGGTTTTACTATTTGGGTAAAAATTGGAAAAACAGGGTGGAGCATTTTGGTGCAAAAGAGGGGTACGATCCAGAAGGTTTATTAGTTGCATGATCTCTGCGAACCCATAGTGAACATTGATTTACCGGGGGGTTCGCGGAAAAAATCAATTCATTATATTTATTTTTTGCGGCAATTTATCACTGGATTCAAAAACGTAAATTTTTTAAAAATGTATATATATGAACGGGTTGATGCATAACCCTAATTAATTTACA # Right flank : TCCGAAACAAAAGCATTAAATCTAAAGTTGATTATTTTTGGGGTTAAGTTAGCTAGTAACAGATGAGATGAAATCCCCATGCCAGTAATCACCTTGCATTATGAAGACCTTGAGAAACTCACAGGAATAGATAAGGAAACCATCATAAAACGGGTGCCTATGATAGGAGCCGATATCGAAAGGATAGAAGATGAGTCCGTAGATATCGAGTTCTTCCCTGACAGGCCTGACCTTTACAGTGTTGAAGGGGCAGCCAGGGCAATGCGGGGTTTTCTTGACCTTGAGACCGGGCTTTCCGAATATGCGATAAAGCCTTACGAGGTATCCATATCCGTCAGCGAGGATATCCTGAAGATCAGACCCTTCCTAGGGTGTGCGGTCGTAAGGGGAGTAAAGTTTACATCCTCTTCTATCAAATCCCTCATGGACCTGCAGGAAGACCTGCACTGGGGCCTTGGGAGAAACAGGAAAAAAGTTTCCATAGGGGTCCATGACCTTAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2969861-2971628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 2969861 30 100.0 37 .............................. GTGAGATACTCGATAAGAATCTTATCATCTTCTCTGC 2969928 30 100.0 37 .............................. ACTTTACAGCCCCCTTTTACTGGTGACCTATAATATT 2969995 30 100.0 37 .............................. CTTCCTGTGCTGCAACGGTATAGGCTGCAATGACAGT 2970062 30 100.0 35 .............................. ATATTTACTTTGGTTTGACATATTATCACTCCTCG 2970127 30 100.0 37 .............................. GCTTTCTGTTGAGATGCTGCGGTGTGTGAATATAAAA 2970194 30 100.0 38 .............................. TAATACACATCAGTACAGACATTATTTCCCATGTGATC 2970262 30 100.0 35 .............................. TTCAGGACAATAATCAGCCCGCCTGATGTCACACT 2970327 30 100.0 37 .............................. AGCACCATACTCAACCATCTGTTCTGGTGTCAGCTCC 2970394 30 100.0 35 .............................. GTTCTTACGTTCCTTTTCCTGATAGGAATAACATA 2970459 30 100.0 35 .............................. GAGTCATATCATTATCATGATTATAAAAATACATT 2970524 30 100.0 38 .............................. TTCAAGAAATATGTAGAGGCTATGATGTTCTATAAGAA 2970592 30 100.0 38 .............................. TTCTTCTACTGCTTTAATGCCTCCAATAAGGAGAGCAT 2970660 30 100.0 34 .............................. ATAGCGTTTTAAGCGATATGGGCTGTACACGCTG 2970724 30 100.0 37 .............................. GTGCCTGCAAGGCAGACACCATTACCCAGATAGCAGA 2970791 30 100.0 36 .............................. TATGATTTCTTCTTCTTAACAACTACGTGAACTCTA 2970857 30 100.0 37 .............................. TTTTCATCTTTTACGCTAGAATCCTGAAACTCAGAAT 2970924 30 100.0 34 .............................. TTAACAAGGTCTTCGACTGCATCGATAGCGAAGG 2970988 30 100.0 36 .............................. ACAGATACCGAAATTGAAGAGGTAATAAAGAAAATT 2971054 30 100.0 35 .............................. TGTTACGCCATAGTCAAGGCTCCGATAGATATCGC 2971119 30 100.0 35 .............................. ACAACCGGAGCAAACCTTAAAACCGTTCTGGAAAT 2971184 30 100.0 37 .............................. GTGCTAACGGAACTGGTTTTGGGGTATGTAATGTATG 2971251 30 100.0 40 .............................. CTAGCACAAGCTGAACAGGCTTCGGGAGTGCTGAAAACCC 2971321 30 100.0 37 .............................. GTGTACCCTGATGGATTTATCTTAAGATCAGGATGCA 2971388 30 100.0 39 .............................. GAATCATGTATCTCTATAACTCTCTAAATCATTATACTA 2971457 30 100.0 46 .............................. GAAAAAGACATGACGGTAATGAATACTGATCGTATACGAATCAGTA 2971533 30 100.0 36 .............................. GTAACACGTCCCCCTAATCTCGTTGGGGGAAACTTG 2971599 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 27 30 100.0 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : ACATGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTCACAAAAGCCGAATTCCTGAAAGTTAAGTCAAGGCTTAAAGAACTCATAGAAATAAACCATGACCACATTATCTTCTACAGCTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAACAACATAATTTGATCAGCCATATCTGCAAATTTCACTACTTAAGCCTTCATACAAGAGCCAACACATTATATATATATTTATCAAAGATCCCCGTCAGAAGATTCTGCTTATCTTCTTTTTTCGTGGATCTTTATAAATGAACCACCGAAAGAACGATCCCCGAAACTTCCTCTTGAATATTCATTCAGAAAAGGATACTTTTATATTGTACAACACCAAATACCATTGTCTAAAAACAACATCAAACTCCGAATTATCCAACTCTTATTTGAAAGGACTCCACATCCAATTTACCTAAATTCGGGGAAAAATTTCTTG # Right flank : CACGAGGGGGAAATACTTATATAAATATTTATTCTTTAAATTAGGAGTAGAATAAAGTATTCAAAAAATAAATTGAAAAGATATATACTATTAAGAGAAATGTAATAGCAATCATTTCTTTAAGGGATTGAAAATTTAGAGTTCGCAATTTTATTAAAAAATAAGACCTTTGAGGGATCGTTTATTTTTTGCATTTTTTTATAATAAGTTACTTAATATTCCATTTAGAGTTCGTAATTAACTGCGAAAAATTTATCTACGTTAAGATATATCTTAAGATACAATTAATTCACAAAAACGGGAAAATATAATTATAAAATTAAATGAATGGTTAAGGAACAAGTTATGGATCAAACAAATCCTGTTGAATCAACATTGTTATTTTTAAAATTATTGGACATTCTACAAGAAAAAGTCCATCCTCAGAATGGGAAAAAATAAAGATATTGATACTACAAAAATAGTTATCTGGAGGGTAAATATTGATATATCAATATACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 5 2980359-2981568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2980359 37 100.0 37 ..................................... ATCCGTTTTTCTCTTACTACAATACCCTATACGCGCC 2980433 37 100.0 35 ..................................... CGGAAGTGAGCCGAATAAAGCCAGGGGTCCGCAGT 2980505 37 100.0 36 ..................................... ATTGTCCTCTCACATGGTCACAATGCCCGAATATTT 2980578 37 100.0 37 ..................................... CTGCGCAAATTCTGCTATAGAGGATTGTGATTTTGAG 2980652 37 100.0 36 ..................................... CTTGTTTGCATGCCTATACCATCTGCAATGAATCCA 2980725 37 100.0 36 ..................................... TACGTGATATCGACGCTCGCGACTGTGCCATTTATT 2980798 37 100.0 46 ..................................... TTTCCTCTCTTCTTATTGAGGATAGCCTGAACTATTTTAATTTCTG 2980881 37 100.0 33 ..................................... TATATGATAAGTGCGTAGTAGTAGTGTAGTAAA 2980951 37 100.0 36 ..................................... CACTTAACAAATTCTACAGCTTCACCCGACGGGCAA 2981024 37 100.0 35 ..................................... TACCGTTTTTTGACCAGTCCTCAGAAGGTGTTATA 2981096 37 100.0 36 ..................................... ATAAATCCGTTTTTGTAGTCATGTCTATTGATTCCG 2981169 37 100.0 34 ..................................... TCTCCTTGTATGGTTGGGTTTTGTTTCTTGTTTT 2981240 37 100.0 35 ..................................... TCGATGTGCGGTATCTTGCAACTCTACATGCAACC 2981312 37 100.0 36 ..................................... GTCGTCAAGTGAAACCTCCGCGAATGAAGTCGGGGT 2981385 37 100.0 36 ..................................... AATACAACGGCTTTTTTTCCATATCTTGACCAGGGG 2981458 37 100.0 37 ..................................... CAGGGTTTTTTGTATCATCGAATACATACACAAAGGC 2981532 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 17 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AATAATTTCAACCGTAAGTTTATTCATCATAGCACCTGTTGTCAAGTTTTTCGACCTCGACATAAATCAAATCCCAACAAAATATTTGATATCATTATTATCCGGAATTGTTGTCTCTATAGAAGCACATATAATTGCGGATATGATATACACCAAAGTAAAAATAAAATCCACAAAAATAAAAAAGAAACTGAAAAATATTCACACCAGCAGACCGTAAAAATAAAATAAATCAGCTGTCAATTCATTTTCAATGAATTATCTTCCACTGATCATTATGTACTCTAATGTAACAGGGAAATCAGCGGAAAAAGTCAAGAAATATATATGAAAACATCTTAACTCCTAGTAAGTACATAGATTGCTTTCCCTGAATATCTGCGTTTGAGGAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTCAAGTCCCAAAAAAGAGGTGATTTTAAGCCTTTTCTGGCGTAATAACGGAAATTTTTGCCCT # Right flank : CTTTAGCTGTCCAAGATGGAATGTATTCAAGTGATGTAGATAAATATATAAGTCAATACGATGGTGTTTTTGTAGGAGGTTCCACCGATTGGAAATGGAGCACACTGGAAAAATGGGTTGAATATGCACATGATAGAAAGTTGCCTTGCCATGTAGGACGCGCAGGTACATTTAGAAACATAATACGGGCGAGAGTTAATGGAGCCGACTCTGTTGATTCATCTACAATTACACAGGCCAATAGATCTGGTATTTTTGGGCAGATGTCAGGATTTAAGCGGTTGGAATCTGTAGAAATGCAAACTGTTCTAACCGTTTAGCCCTCTTTTTTTACGTCAATCCACATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACCGAAGGAAACAAATTAATCCACGTTTCAACCGCCCTGATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACTTTTTTCCATAGGCTTCCACTGCCTGAATAATTGTCCCTATTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 6 2981912-2982902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009504.1 Methanosarcina sp. WH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2981912 37 100.0 37 ..................................... CGAAGGAAACAAATTAATCCACGTTTCAACCGCCCTG 2981986 37 100.0 39 ..................................... TTTTTTCCATAGGCTTCCACTGCCTGAATAATTGTCCCT 2982062 37 100.0 36 ..................................... AAAAATGAATCATATACTAGGACAAATCGAAACCGA 2982135 37 100.0 34 ..................................... TGATCCACACAGCCTTATAAAAGTCGAAGGGAAT 2982206 37 100.0 37 ..................................... CCGTCTCCGGGTTTGTCGGTCATAGTAGTATCCTCAA 2982280 37 100.0 36 ..................................... TTTGTTCAGGTGGTCCTGAAAGCCGTATCCAAGACT 2982353 37 100.0 35 ..................................... TACTCTCCCATACTCTATTAATTCGTCTTCTGTGA 2982425 37 100.0 38 ..................................... TATATGATAACTGCGTATAGGAGTATTGTAAGATCACA 2982500 37 100.0 38 ..................................... TAATGGGGGCGTCTTCCTCTTTTGCATCAAATATACAT 2982575 37 100.0 37 ..................................... AAATATACTCAAACGCCATTTCAAGATTGCACCCTCT 2982649 37 100.0 35 ..................................... CTTACCTGGATCTTATGCTTATGTCTATGGAAGAA 2982721 37 100.0 36 ..................................... TGAAAGATGTGTACACACTTGTCTCTGAAAACGAGA 2982794 37 100.0 35 ..................................... TGTGTGCTCCGAGGCAGGATGTTCTTTCAAGGATG 2982866 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGATTGAAACAATACAACGGCTTTTTTTCCATATCTTGACCAGGGGATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACCAGGGTTTTTTGTATCATCGAATACATACACAAAGGCATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACTTTAGCTGTCCAAGATGGAATGTATTCAAGTGATGTAGATAAATATATAAGTCAATACGATGGTGTTTTTGTAGGAGGTTCCACCGATTGGAAATGGAGCACACTGGAAAAATGGGTTGAATATGCACATGATAGAAAGTTGCCTTGCCATGTAGGACGCGCAGGTACATTTAGAAACATAATACGGGCGAGAGTTAATGGAGCCGACTCTGTTGATTCATCTACAATTACACAGGCCAATAGATCTGGTATTTTTGGGCAGATGTCAGGATTTAAGCGGTTGGAATCTGTAGAAATGCAAACTGTTCTAACCGTTTAGCCCTCTTTTTTTACGTCAATCCAC # Right flank : CATTTTTCAGTAACGGGCTCTTCATCAAATATAAGAATTCGTGAGAAAAAGCGGTTCGGAAAATATTCGAAAAAAGGACTGCTCCAGGGTGGAATAATTTCACCTCTTCTTGTAAACTTCTACCTGGACCAGTTCGACAACCATTGGGTTGAAATCGGGCTCAAGAATGTTGAATGGGAGTCAGTTGAGCACCTTGTGCGTTTTGCAGATGATTTTGTAGTCCTTTCAAAGGAATGGATCGATCCTGACAGGGTTGGGGCTTTTCTGGTTGAACTGAGCCTTGAACTGAACAAAGAAAAGACATATTTCGGGACTGCTGGGAATGGGTTTGAGTTCGTGGGCTTTTATTTTCAGGAAATTGTGGAGGAAAACGGGTCAGGGAGTATTATAAAGGTCATACCTACCGAGGGGTCCATTGAAAAGGTTATTGAGAGTATAAAGAGTGGGGATGGCATAAATAAAGAGACTTAAGACGACAAAAATAAAATTTAGTCTCTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //