Array 1 168890-169217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJR01000003.1 Pectobacterium carotovorum subsp. carotovorum strain B2 B2.scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168890 28 100.0 32 ............................ ATGCGTCAGCAAATTACTGAACTGGGGTTTGA 168950 28 96.4 32 ............A............... GCATCAAATTCTATAATGCATCGAACGTGCTG 169010 28 92.9 32 ...........CA............... CACAGGGTGGCAGCGATGCTGATTACAAAAAA 169070 28 100.0 32 ............................ ATTCGTCAGCAGTCATAATTACCTCGCCGCAG 169130 28 92.9 32 ............A....T.......... TAGGACCAATTGACTCATAATCAATTGGTCGC 169190 28 71.4 0 ..G........AAC......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGAAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCCCCTCCTTAATACAGAAATTCAGCCAGCCACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGACCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGGTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAAC # Right flank : AATAAAACGCCGCAAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTACTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACAAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46795-47860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJR01000007.1 Pectobacterium carotovorum subsp. carotovorum strain B2 B2.scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46795 29 100.0 32 ............................. CGCTGCATTGGCGTTTCCATGGTTGGGTCACC 46856 29 100.0 32 ............................. TCACAGACGGTACGAGCGGAACGACAGTGGTA 46917 29 100.0 32 ............................. ACGCGACGCTTAGCCATAACGCGATCCTGAAT 46978 29 100.0 32 ............................. TGTCATCGATAACACGATCTTTGGGTAGATCA 47039 29 100.0 32 ............................. CGTTAAAAGTGAGAGTTTTCTCGGTAATAAAT 47100 29 100.0 32 ............................. GTGATGCCCAGATGTCTCACTTGCGCGGCATT 47161 29 100.0 32 ............................. CATGCTGATAATCAGAGCGGCCTGGGCTTCAA 47222 29 100.0 32 ............................. TAAAATCGTTTCAAAATCCAGCGTTTCGATAA 47283 29 100.0 32 ............................. GTAATCGCAACACATCGAACATTTACACGTTA 47344 29 100.0 32 ............................. TTGTTTTTGCGCGATGGCTATGTCGTCCATGC 47405 29 100.0 32 ............................. CCCGCCGATATGGAAATTCGCATCGTGCCGGA 47466 29 100.0 32 ............................. AAAAAATTCGCTTGATACGCGTTGAAATCGAA 47527 29 100.0 32 ............................. CAGGCTCGCGGCCAGCTCCGGCACGTTGGTGC 47588 29 93.1 32 ..........T..G............... TAATCAAAGAGACGCCGGGCAGTCGGAGAAAG 47649 29 93.1 32 A............G............... CGGGATGCATGGGGCGCTCAGATTGGTGCGCA 47710 29 86.2 32 .A..........TT.............A. GCCATGTTCGGACACGTCGAAACCGACACTTA 47771 29 100.0 32 ............................. AGATCATTGCAAACAAAGAGGAACCGTTCAAA 47832 29 93.1 0 ................T...........C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTCTTTATTCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48662-49485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJR01000007.1 Pectobacterium carotovorum subsp. carotovorum strain B2 B2.scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 48662 28 72.4 34 ..-..TG.T.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 48724 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 48785 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 48846 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 48907 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 48968 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 49029 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 49091 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 49152 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 49213 29 100.0 32 ............................. AAATGAGCGTGGCCATATGCGCTGGTATAAAG 49274 29 93.1 32 ......A....C................. TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 49335 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 49396 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 49457 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTAGGTCAGACGACACGATATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGACGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //