Array 1 460391-460604 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRWU01000001.1 Lactobacillus johnsonii strain CH32 Seq1_Organism:Lactobacillus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460391 29 100.0 32 ............................. CCTCGTTCCAATCAGTCAATTTACGAACATGC 460452 29 100.0 32 ............................. TGCTTTCTGATGTGCATATACTGTAAAAACTG 460513 29 100.0 32 ............................. TGCTGTACACATGGTACCTAGCGTAAGTATTT 460574 29 89.7 0 C..A...........T............. | C,C [460598,460600] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 TGTGTTCTCCACGTAGGTGGAGATGATCC # Left flank : ACGACTTTTGATGTAGATTACTTTTTGCATAGATTAGAGAAAAAAGGGATTATTAATGCACAAGTCATTTTAGATATTCGGAACGGCCAAGAAGATACCCCAGATATAAGAATGGCTTCAGGAGACGCCTTAAAGAATGTACTTAAAACCCATTTGCTTGGAAGATAATTAATTATTTTTAAGGGAGTAAATTTATTTGTCCGTGATTCACTAGCAATGGTTGATAAGAATGCAAAGAATAGAAAATGAAACTTAGGATATTTTGTACAGTATAATTACATAATATTGATTATTTGCGATTTGAAAATTAAATATAATTAAAAGGTGTACTGCCTTTATTAATTGAAGCAGTGATCACTTGCGTTAAAACCATGAACAAAAAAATATATAAATGATTTTTGAAATCATTATTCTTTAAGAAGCCTTTATGAATTTAGTAAAACTAATGAAAAATTGTCGTATTATAAACTATGAATGTGATAAGAACAAAGAATATTTAG # Right flank : CCTTTGATGTATATTTCCAAACTTTTCGAATTCTTTTCTTTTCATTGTGCTATGCTTTCATAAGGCTTATACAATCTCATCTCTCATCGAAAATACACAGAAATAGTTTGTTTAAAGACCTACGTAGGTCGATATTTAATTATTACTTGTATTCTTACTAAAAAAAGGTGTATCTATTTTATTTTCATTTAATCGCTCAATGATATAATTAGCATAAATTATCTTTTGTTCATTTGTAGCATTACTTTTCAATATTGGCAACGGTGCATAATCAACATACACTAACACACCCTCCAGTTCTTTAGGTGTTAATATCATGAGCGAAAACCTTCTTTAGTTTAATATTTCTATCTTTTTACCACAGGCTTTCGAGCAAGCTGCTGCGGAATTTGAAAAATCAAATAATACTTTATCATAAGATCATTGAGGTAAACAGTCTACTAGAGTTTCCGACGAACGGACAAAATAAACCTAAAATTATTCAATAGAAAGAGTAAGTG # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTTCTCCACGTAGGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 462810-463375 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRWU01000001.1 Lactobacillus johnsonii strain CH32 Seq1_Organism:Lactobacillus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462810 29 96.6 32 ............................C CAAATATTTTTAGGTAGTGTTACAGCAACAAA 462871 29 100.0 32 ............................. AATTGCGTCAAGTTGTGCAATTCTAAAGCCTA 462932 29 100.0 32 ............................. ATTGAGTTAGATAGTTGGAACGGTCAAACAAT 462993 29 100.0 32 ............................. TTATGCTTGTGGGCAAATTCAGTTGCAGAGGC 463054 29 100.0 32 ............................. GGCAACCCACTGTGCCCGGATTAATTCCTTGG 463115 29 100.0 32 ............................. TATCTAAACCATTGTGCCGAAGAATGGAGAAG 463176 29 89.7 22 ..G...........A.............C AGTTGCGCCCGTAGGGATTTTT Deletion [463227] 463227 29 93.1 32 .................A...A....... ACTCAACAGATTAAAGTTTAGAGACGTTTCTA 463288 29 93.1 31 ..............A............A. ATTCCTCTAACTTGGCTGATGAAGTAGCCAA 463348 28 72.4 0 ..G..T........A.A...TA.-.A... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.5 31 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TCATCAAATTTTTTGCCTTATTTTTGATTATTGTAGGTGGAATTATTTCTATTATTGGAATTCCTATAGCAAAGTTACTATTTTTACTAGTATCACGTCAGAGAGAATATTTAGCGGATATTGGTTCAGTTGATTTGACACGTGAACCAAGTGGCTTAATTTCTGCCTTATCTAAACTTGAAAAGCTAGAAGAAGGAGAGAGTACTCCACAAATTGGCTCACAAGATTTAGCCCTACAACATTTGTATTTTAATTTTCCGCGTGCTCATAATTGGATTAGCCGCCTTTTCTCCGATCATCCACCTTTGGATAAAAGAATTGAACGCCTAGAAAATAGTAATCGGATAAAATAAGATAAGCACGACCAAATATCATGAGATGGTATTTGGTCTTTTTGCTGGGGTCAAATGTAGGTTAAACACTTGATTCTTAGTTGATAGAAACTAATTGAAAATGATATTATTTGAATTAGAGAATGGCATCATATCAAGGATCTTTTA # Right flank : TAGGATATTAGCAAAAATAATTTATATTTGAGTACTTTTTATCAAAATGATGCAATAAGTAGTAGTCATATGGTTTACTGGCCATAAAGATCATGGGAAGAGTTAAAAATTAATTATTCTATAAGTGACCTTTTTGGCTTTTAATTAGAGTACTTACTATATTGTATAAAGCAAAATTATCGAAAATGGTGTAGGAAGAAAATCAACTGTACTATTGGTCCATTGAACGTATTAAGGTGAAGAGATGATTAGAACTATATAACATTGATGCCAAAGTAATTAAGCTAGGCCCTTTTGGAAAAGTGATGCACGATAATTCTGAATTTAAAAAATTGTATAGTGCACAATCAAACCTTTAATCTCTGTTCCAAAAATAAAGTTGAATCTAATTCAGCAAAGGTAAAAGTTTTATCTCATTCATTAAGCGCTCTAGTAGCGCTTTTTGTTTTGCGATGGACTTATCACTACTGATGGATAATCTAAAAAATTAATAATGGAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 473508-474573 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRWU01000001.1 Lactobacillus johnsonii strain CH32 Seq1_Organism:Lactobacillus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 473508 28 100.0 33 ............................ TATCATTAAGTACTTATTCAGGTAGGCGCACAG 473569 28 100.0 33 ............................ CATATTTTTTTATTTTATTCCAATAATCAAGCC 473630 28 100.0 33 ............................ TAGACTTGTGTTAAATACGTCAATACTTGCCAC 473691 28 100.0 33 ............................ TTAAGCGTAACATTAAGACCAATCAAACTAATA 473752 28 100.0 33 ............................ TCTCTAGTCTATCTTTAATAAAATTCCAACGCC 473813 28 100.0 33 ............................ TATGAACGTGACTAGTATCACGGATACCAATTA 473874 28 100.0 34 ............................ CTGATCTAGCATTAGAAGCCCAAGACACTTCGGA 473936 28 100.0 33 ............................ TATGGAAGTTGCTGAGTAACTCCAGGCACCTAG 473997 28 100.0 33 ............................ TTACTCAATGCGTGAGCGTGTAGCGTGTTTCTG 474058 28 100.0 33 ............................ TAGACGATCTTGTTTGTGTAAGTACAAATTGAC 474119 28 100.0 33 ............................ CTCATCTTGTATTCTTCGGATTCTTTTGCCCAT 474180 28 100.0 33 ............................ CCACTTAATAGGCACTTTTTTACCATTATCACT 474241 28 96.4 33 ..A......................... TCTTACCGCCTATAGTTTCATCATATTGAGGCG 474302 28 100.0 33 ............................ TAAACTGATAGGAATCTCCAACCTTGAACCGAT 474363 28 100.0 33 ............................ TTCTGCAAAACAAATCAGAAGCTTGAGACCCAA 474424 28 100.0 33 ............................ TCGCAGATTACTGGTAGTAACAGCAGGTTTACT 474485 28 96.4 33 ..............A............. TGAAGTAATAGGTTTAAGACAGGGTGAAAATAA 474546 28 85.7 0 ..A..........G.......G.A.... | ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.8 33 GTGTTCTCCACGTATGTGGAGATGATCC # Left flank : AAGAATGGAAAAGTTGATGTATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGATGTAAGTAAATTAACAGGTTTGAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTAAAAGACTTTCTTGGAGATCGAATTTTATTAGGTTACAATTTAACATTTGATATTAGTTTTTTGGATATAGCCTATAAAAGAAATAAGATTTCTGGATTAATTAATACTTCTAAAGATTTACTTCCGATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACAGTATTGTCTGAATATAAAATTGAAAATCAAAATCCACATCATGCGGATTTTGATGCAAAAAGTACGTATCAATTAGCATTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATGTATTTGGACCATTACATCTTTTTAAAATGTTGCTACGATAGGATTCTTTTAGT # Right flank : CCATGAAAAGTGGTGTTGGCAAAATTAATAACTCGTATTCTCCAGTAAATAAAAAATGCCACATCATTCAAAATATACTATATCTATACAATCCTACGTTAATCAGTTGAATGACTTGATAGCCCATATTAGTTGATTTATATAAAAAATATCAAGAGAGAAAAAATATGACACCATCAATTGACTAAAGGCCAATAGGATTTGCTACAATAATCAAAGGACAAGTGAACGTAGTTTATTAGAGAGAAGAACAATGGCGCTATGCTAAAAAAGCGACTCACGAGTCCACTATGAAAGTAGGAGATAGTTGGGTGAACGTGCATAAATACTAGATAGGTGCGGGTGCAAATCTCGCGTTGCATGTCTTAAAGAAAACGATACTCAAACGAGTGTCGTTTTTATTTTGTATTTTTTCTGGAGGGTAGGACTTAAATATTTAATAAAGATAATCCAGATTATCATCCCATAACTAAATACACTAACTCTACTTGTTATGAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //