Array 1 97470-100317 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGM01000010.1 Pasteurella multocida strain P52 p_multocida_P52_Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97470 28 100.0 32 ............................ TATACGGCAGTTAACCTAAACCAGTCTAATCG 97530 28 100.0 32 ............................ ATACACGTCTGCTATTGTCTTTTTTGTTTAAC 97590 28 100.0 32 ............................ ATAATGACCACTAAAAAGGTAATTACCCATCA 97650 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTAACTTAATCTCTAAA 97710 28 100.0 32 ............................ ATCCGAGGTCATAGAAGTGCCTACCTTCCTTC 97770 28 100.0 32 ............................ TGTTGGTAAACGTTTGATTGAATCGTTGATTA 97830 28 100.0 32 ............................ TAATAATGTATATCATTCCACGACACCACACT 97890 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 97950 28 100.0 32 ............................ AATTCGACCTCAAAACCAACAACCATTCTCTC 98010 28 100.0 32 ............................ ACACAAGGTCAGCCATGAAACTTGCGGATTTA 98070 28 100.0 32 ............................ ATGTTGCGAACTCGGCTAGTTCTTCCGCTCGC 98130 28 100.0 32 ............................ TCTAGGTCGATGAGGTCATCATAATGACTCAT 98190 28 100.0 32 ............................ ACAACACCACACTATTAGAGAGAGAAGACAAC 98250 28 100.0 32 ............................ ATTTAGACGTCTTACCACCCGTGTATAGCCAT 98310 28 100.0 32 ............................ TAAAGCCATGCGTTTAATCAACGATTCAATCA 98370 28 100.0 32 ............................ CTCATCAATAAAGCTCTTAAACAACGCAACCT 98430 28 100.0 32 ............................ TCATGAGCTTTCCCTTTATCAGGATTCTTTAA 98490 28 100.0 32 ............................ AATACGCTTCTTAAGACCCTCATCAATAAAGC 98550 28 100.0 32 ............................ TATCGGTGAGACAGGGTTTAAATGGTTGAAAG 98610 28 100.0 32 ............................ ATGTGGATTCAAAAGGTAACCATTGGGTCCAG 98670 28 100.0 32 ............................ AAAGTTACTCTCGAAGACAACAGTATCTACTT 98730 28 100.0 32 ............................ TGGGTATCAGCAACTAGTCGCTCAGAACTAGT 98790 28 100.0 32 ............................ AAAGACCTCTTGGTTCTAGATGGTGACTGGTT 98850 28 100.0 32 ............................ ATTAACCAAGGGTATTAATCATTCGATAACGT 98910 28 100.0 32 ............................ AAGAACCAAATAGCCGCTGAACTACCAACACG 98970 28 100.0 32 ............................ TCATTCAGTTCAGACTCAAAGTCTATCTTGGT 99030 28 100.0 32 ............................ ATACTTTGATAATGATGATGGCACAGTAACGT 99090 28 100.0 32 ............................ ATGGGTCGTGAGCGTTTCTTGAAGAGCTATCA 99150 28 100.0 32 ............................ TACAAGACCTCAACAAAGCAGAGCAGTATCAA 99210 28 100.0 32 ............................ GTAAAGCGATGAAACGTTATAGAGACGTTGAA 99270 28 100.0 32 ............................ ACACTTCTCGGCTATGTTACGAGATGAGATTG 99330 28 100.0 32 ............................ AGCTGATTCTGATAATATGTTTAAATGTATAC 99390 28 100.0 32 ............................ CTTGGTTAATGGTGGGTAATTATCTTTAATGT 99450 28 100.0 32 ............................ TGAATCAATCGTTGCGTCTAGTCTCGAACAGG 99510 28 100.0 32 ............................ TCTACGCACAGTTGTTACGCTGGGTTTCGATG 99570 28 100.0 32 ............................ ATTCTCTAATAGATTCTCACAAAGTTTAATTA 99630 28 100.0 32 ............................ ATAATGGTTATAAGTATGATATTAAAGCTTTA 99690 28 100.0 32 ............................ AATATCTTGACTTGGTCGTGTTGCGCTACAGT 99750 28 100.0 32 ............................ TTATCTGACCTCATGAATCTCACCTGATTTCC 99810 28 100.0 32 ............................ AAATTTAGGTATTTTCGGTAAATCATTTAATT 99870 28 100.0 32 ............................ AAATATGAGAGAATGGTTGTTGGTTTTGAGGT 99930 28 100.0 32 ............................ ATAAAACTTGCGGATTTATTAGGATATCTGAA 99990 28 100.0 32 ............................ AAAATGGTAACATTATTTCTCAGAAATTACGA 100050 28 100.0 32 ............................ ATCTGGTACCCATTTATTTGCGTTAAATATCT 100110 28 100.0 32 ............................ TCTACAGCTTTTCGACCAGCTTCGTCCATATC 100170 28 100.0 32 ............................ TTAAGTCCGATAAAACAGTTGGTATTCTTTTC 100230 28 100.0 32 ............................ CGGCACTGAGTGCGACAATAGAGCCAACTGAC 100290 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 48 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TATTCAAAAAGTTAATCTTTATACTTCTTCAAGTTAACTGCCGTATAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 238197-237929 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGM01000002.1 Pasteurella multocida strain P52 p_multocida_P52_Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 238196 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 238136 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 238076 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 238016 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [238006] 237955 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTATAGGCAGCTTAGAAAAAAAGTGGAAGAAAGCAAAATCACAGCGACA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29484-28856 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGM01000020.1 Pasteurella multocida strain P52 p_multocida_P52_Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29483 28 100.0 32 ............................ ATAAGATTTAAAACCTCCTCAATGCTTACACA 29423 28 100.0 32 ............................ CATTGTTTTAATGATGTCTCATTGGTGTTGAT 29363 28 100.0 32 ............................ AATCTAGATTGTACGGAAAATAAATTTTATCG 29303 28 100.0 32 ............................ ATATAATCTAGATTGGCGTGGTCGAGTGTATG 29243 28 100.0 32 ............................ TTCGTACCCTTTGTTTAGCTGTTTGAGGTAGA 29183 28 100.0 32 ............................ GCTCGCTCATTGAGTGCGCTAATGTATTCCTT 29123 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTGACCAGTTAAC 29063 28 100.0 32 ............................ TAATTTTGTACATAGTCAAGACGCCAACCATC 29003 28 100.0 32 ............................ AGTTAGGTTTACTTAGAAGTGAGCATGTTAAA 28943 28 100.0 32 ............................ AAGTTTCGATAAGTTTCGTGGATTAGAGAACA 28883 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5477-5710 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGM01000031.1 Pasteurella multocida strain P52 p_multocida_P52_Contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5477 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 5543 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 5609 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 5675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.2 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : ACCAAGAGTTAACTTATAGATGACCAAGAGGTTGTAGTTCCCTCTCTC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGM01000009.1 Pasteurella multocida strain P52 p_multocida_P52_Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AGATGTGCTTGGTTTGTGCACCAGCCTTAT 67 36 100.0 30 .................................... TTAGAAGTAACAAATAGTCTGAGCTATATG 133 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 35 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //