Array 1 5363-6183 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTE02000078.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0327 NODE_78_length_13574_cov_18.670484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5363 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5424 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5485 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5546 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5607 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5668 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 5729 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 5790 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 5851 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5912 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 5973 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 6034 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6095 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6156 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110600-108739 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTE02000009.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0327 NODE_9_length_119868_cov_19.457329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110599 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 110538 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 110476 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 110415 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 110354 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 110293 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 110232 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 110171 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 110110 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 110049 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 109988 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 109927 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 109866 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 109805 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 109744 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 109683 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 109622 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 109561 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 109500 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 109439 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 109378 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 109317 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 109256 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 109195 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 109134 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 109073 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 109012 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 108951 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 108890 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 108829 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108768 29 93.1 0 A...........T................ | A [108741] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //