Array 1 222-1247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGLG010000114.1 Neisseria sp. 19428wB4_WF04 NODE_114_length_1337_cov_222.259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222 36 100.0 30 .................................... TTGCTGGATATTCTGGGCGTGTTGGCTAAA 288 36 100.0 30 .................................... ACGGCAGCGGCCGTTGCCAGCCCTATGCCT 354 36 100.0 30 .................................... CAGAGAGAAAAAGTTGGCAATACCTGCCGC 420 36 100.0 30 .................................... AAGACGGGTTGGCCGTTGACGGTGAAGACG 486 36 100.0 30 .................................... GCAGTAGGTTGCCGTAACGGCAGCCTTTTT 552 36 100.0 30 .................................... TATGAACGACAAACCGAGCGCGGCAATCAC 618 36 100.0 30 .................................... TAGCTGTCGGCGCGGAACTGCGCCCATTCC 684 36 100.0 30 .................................... GCCTAATGGGTATTATGGCGGCGGTACAAA 750 36 100.0 30 .................................... AATGAGGGGGGTGCGAGTGTGAAGTCTGTG 816 36 100.0 30 .................................... TCTTTACAGGCATCTTTGCACCGGATTTTT 882 36 100.0 30 .................................... TTAATAATTGTTCTGCGGCCTTTACTGTCA 948 36 100.0 30 .................................... CCGCTGCTCGAGCTTCCGCCGCCTTTTCCT 1014 36 100.0 30 .................................... CCAAAATCATAGCAATGCCCATCTGCTTGG 1080 36 100.0 30 .................................... AATTGGACTATGGCACTAATCGTTAGTATT 1146 36 100.0 30 .................................... CGAACCCTGCTGCGAATGGGTGGGCCGCGA 1212 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : GTTTGCCGACCGACACAACCATATCAACGGCATTGAGAATTTTTGGAATCAGGCGAAACGTGTCTTGCGCAAATACAACGGAATCGACCGAAAATCTTTTCCTCTGTTCTTGAAAGAATGTGAGTTTCGTTTTAACTTCGGGACACCAAAGCAGCAGTTAAAAACTTTGCGGCTTTGGTGTGGTGTTTAGGGCTAATCTACTTCAGCCCCAAAAAATATCTG # Right flank : ACCCAAGCAGGGAATCCTTGTTTTATAAGGATTCCCTGCTTTATTTTGCTCTGAAAAACTGTGTCAAAACAGTAAAAGTTGGTCGGCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 919-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGLG010000050.1 Neisseria sp. 19428wB4_WF04 NODE_50_length_18073_cov_69.5471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 918 36 97.2 30 ...A................................ GACCATCACATAGGCAAAGTCCGTTTCATG 852 36 100.0 30 .................................... TGTCGGGCTTGTAGCCTCCGTCGCCCCGCA 786 36 100.0 30 .................................... TCTTCTTCGGGGCTGGGTTCTGCTGCTGCT 720 36 100.0 30 .................................... CTTGCCGATACCTTCATGTTTTGGAATTTC 654 36 100.0 30 .................................... CTACTGCACATCCCATTAAGAGTAGGCTCA 588 36 100.0 30 .................................... GGAATCGAAAAGCTGATTAAAGGCGTAATC 522 36 100.0 30 .................................... GGTCAGGGTGTCGATAAAAGCGGCCGTTGA 456 36 100.0 30 .................................... AAAACCAGCAAACCAACCATCGCGAAATGA 390 36 100.0 30 .................................... GCAGTAGGTTGCCGTAACGGCAGCCTTTTT 324 36 100.0 30 .................................... TTTCTTTCCAATCAAGCGTTAAGGTTTCGT 258 36 100.0 30 .................................... ATTACTTCGACTCGCCCGCTTTGTTGATAC 192 36 100.0 30 .................................... ATGATTTCCAACGGATCGATGTTGATGGAA 126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : TTCGAAGTATCCGGCACGATTTCGGTATAGACTTTGTCGTCCCGTTTTAAGATGCCGAAAACAATGGTTTTGCCTCCCTCTCCCAGCCCGAGTTTACCTCAGATGCGCTTTGCCTTGGAATAGGATTGGTCTGATTCTACGGTGTCTTAGAAAGAGATGTACTGCCCGCATTCGCCAGCTAGGCACCGGTGTAACTTCAGGTACGGGCTGTTAATGCTTCCGACACTGATTCCGGTTAGTTAGCGGTATCGGAAGCGTTCAAATAGAAGGCGGAAAGCCACAGGACCTGACGGCATTGGGCTCGGTAATTTTACTGCACTTTTGATACTTGTTTTTTAATTTCATTTCAGAAGCTTATCACTATATTGGGTGATTTTGCTTCCTAAGTCCCCTATACAAATATATTAATATCATAAGTTTATGAAATAGCAAATTAAAATTCATTCACTACATCTCTCTTAGTGCTGCAATATTATGCACATGGCACGTGCCGTATCTCC # Right flank : TACCCAAGCAGGGAATCCTTGTTTTATAAGGATTCCCTGCTTTATTTTGCTCTGAAAAACTGTGTCAAAACAGTAAAAGTTGGTCGGCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 418-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGLG010000120.1 Neisseria sp. 19428wB4_WF04 NODE_120_length_1031_cov_102.375, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 418 36 86.1 30 ............AT.CC.............C..... TGGTCGGGGCGTATAAACACGCTTTCGGGA 484 36 94.4 30 ...............C.......A............ TTGCAGCGAGCGCGGGGCAATGATTTCTTC 550 36 100.0 30 .................................... TCCTCTGTAAATAGGGGCTATAGATCCGCC 616 36 100.0 30 .................................... TGCTGTACGGCCAGCGAGAGCAGGCTCAAA 682 36 100.0 30 .................................... CCGGCAGCTTCGCATTGTTGCCGGATGTTA 748 36 100.0 30 .................................... ATAACGAGTATTGCCCCAGTCGGGGACCAT 814 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : CGGCGCGTCCGTTTCAGACGGCCGTCAATCCCGCCTTTGCCGGATTCCCTGCCCGGTTCGGGGCAAGGCGGCACCGCCCGTCAATATGCCGGCGTCCGATGCCTCCCCGCTTTGCCGGCGGGGGCGGCCGAAAGAAAAAACGCCCGCTTTTATCAACTGCTTTCCCGGGCCGGCCATCGGTCAGCAGGCGTTTGCAGACGGCCGAATCGCAAACCGGCCCTGCACGACTTTCTGCCCTGCGCCCCGCCGGTTGCCCAAACGGAGCGCAAAGGCTGTCTGAAACCGAGCAAGGGTGTCTTGCCTTCATCAGGCGGTGCAGTGGCGGCCAGGGGGAAACCGCCCGGCCTGATATGTGGCGGATATGTTGAAGCAGGCGGACAATTCAGGCCTTGAAACCGGAAAAAGTATAGTGTGTTAG # Right flank : CGGGGGTGTTGGGTCAGCAAAAAAATAGGGGCTGACGTAGATTAGCAGTCATGACAGGCTGCCAAAATGAAGATAACCCACTGTAAGTTAAAGAAGAGTCTGCAAAGAAAACTGCTTGAATATTTTGTATTGGAAGTAACCGCACGTTCTGCTGCCGATATCTTAGGTATTCAGCCCAATAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //