Array 1 70897-70430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBT010000004.1 Streptococcus thermophilus strain ST13 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 70896 36 100.0 37 .................................... AAAGTTACATCGTTTTTTTCGTTTTTGAAGATTTTCC 70823 36 100.0 33 .................................... AGTTTAAAAAACTCGATACGATCTTTCTTTTTT 70754 36 97.2 36 ..C................................. ATTTTCCATGCTTTTGTCATAATTTCTTTTTTCATT 70682 36 100.0 37 .................................... CAAAGGTTGTTTATTGCTGTATTCGGTATTTTTTCTT 70609 36 100.0 37 .................................... CGTAAAATGGCATGTTCAATTTAAGTGAGTTATCATT 70536 36 100.0 35 .................................... TTTGTGCTGACGTGCCAACACTTTTAGCAAATTCT 70465 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 97.2 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : GACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACCTCCTAACTGAGAAAGTGTCACTAACTGATATTGCAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 256666-258419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBT010000001.1 Streptococcus thermophilus strain ST13 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 256666 36 100.0 30 .................................... AAAGTAAACAAGTTTATCATCGCAGGTATG 256732 36 100.0 30 .................................... GAACCATTTTTGGATAAGTGCATTTCATTC 256798 36 100.0 30 .................................... AAAGTAGATAAAAAATCTGAATCGGTAATA 256864 36 100.0 30 .................................... ATGCCAGAGTATGTTATTCCAACCGATATT 256930 36 100.0 30 .................................... TGTATCGGTCTGTCAGCGATACGAGTGTCG 256996 36 100.0 30 .................................... GTCAAGGACGTGCCGTTCCAGTGGATGTCA 257062 36 100.0 31 .................................... CTATTTTGTGAAGAAGCTAGACGGCGTGGTC 257129 36 100.0 30 .................................... GTATATCACTGACGGACTCGCAAACGACTT 257195 36 100.0 31 .................................... ACTTGATATGACTGCGTTTCTAGAGGAACGA 257262 36 100.0 30 .................................... GTATGATAGATGAATAGACTTAAAGAGTTA 257328 36 100.0 30 .................................... CTTATGGTTATGCAAACGGTGGTCTAGTCC 257394 36 100.0 30 .................................... TATATTGATTGAGATGTGTTTATATCTTAC 257460 36 100.0 30 .................................... AAAATAGTATCGAAGATTTAAAACTCATTG 257526 36 100.0 29 .................................... GGTGTTTGATAAGTTGATTTTATCGACTG 257591 36 100.0 30 .................................... CTAAAAAGCGCAATGAAACTATCAATAAAT 257657 36 100.0 30 .................................... CCAAATTTGAAATTTGTAGTATACTAGAGT 257723 36 100.0 31 .................................... TTTGAGTCTTTGGTTATGGAAATTGTTGTCC 257790 36 100.0 30 .................................... GATGTCCTCTGTTCTCCAGTCGTAAATTGG 257856 36 100.0 30 .................................... TCTATATCATTCAAGTTAGTATTAGTAGTT 257922 36 100.0 30 .................................... GTCCACGTTTGGCACTAATGACAAGAACTT 257988 36 100.0 30 .................................... AACTGTATCCATTAATATAGTAGCATTTTT 258054 36 100.0 30 .................................... AGCACTTGATAGATACATTGATAGTCAGCT 258120 36 100.0 30 .................................... CTAGACAGTGGTATGTCTGACGCTTGGATT 258186 36 100.0 30 .................................... ATAGCTGGAGATAATTCAGAAGAGGGTTCT 258252 36 100.0 30 .................................... TAAGCCTTATACTGTATGTGAAATGTGTCA 258318 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 258384 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 59211-60038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBT010000007.1 Streptococcus thermophilus strain ST13 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59211 36 100.0 30 .................................... CAGCTAAATCTTTTTCAGCTTGAGCACGAT 59277 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 59343 36 100.0 30 .................................... GCACTTATGGGCGACATCGTAATGATGTCG 59409 36 100.0 30 .................................... CTATGATGATTGATAAAATAATCAAGGCAC 59475 36 100.0 30 .................................... CTGAACTTAAAACTGACGTATCTAACATCG 59541 36 100.0 30 .................................... AACTATTTAGGTAATGTAGCTAGAGAAACA 59607 36 100.0 30 .................................... AGTCCAAAGGTATTTTCCTTTAACTAAAGT 59673 36 100.0 30 .................................... CACTAGGTTTTACAGCTTCTTCGACTGGTT 59739 36 100.0 30 .................................... GCTATAATGACTTGCTTAGTATGTTTAGTT 59805 36 100.0 30 .................................... AATCAGCAAATAACACTGACAACTATCCCA 59871 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 59937 36 100.0 30 .................................... TTGACAGAACTTTTGAAAGTATGGTTAGAA 60003 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //