Array 1 1546081-1545055 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP009676.1 Staphylococcus schleiferi strain 5909-02 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1546080	    36	 100.0	    30	....................................	TGAGTGTTGCGAATCAAGTAGGAGTTACAC 	
   1546014	    36	 100.0	    30	....................................	GAAACACCTATGGTACTATTTAGTTGTTGG 	
   1545948	    36	 100.0	    30	....................................	ATTTCGTTGAATTTGTTAATGTAAGCCATT 	
   1545882	    36	 100.0	    30	....................................	CAAGACCTAATAAGATTGCTACAATTCCAC 	
   1545816	    36	 100.0	    30	....................................	TAAGGTTGATTACAGACCATAAAAAAACTA 	
   1545750	    36	 100.0	    30	....................................	CAACTTTAGACGTATATTCACATTTGTTAG 	
   1545684	    36	 100.0	    30	....................................	TGTATTCTACAACTTTAAACATGATAAAGA 	
   1545618	    36	 100.0	    30	....................................	TGTTTTACGATAACAAAGGAGGCAACTGAT 	
   1545552	    36	 100.0	    31	....................................	AAACATAATTCTTTGAAACAAGGTTATCCTA	
   1545485	    36	 100.0	    30	....................................	CTCATCTTTAAAAAACCTTGAGATCTCTTC 	
   1545419	    36	 100.0	    30	....................................	TATCAAATTTGATTACGGGTGTATGCCTAT 	
   1545353	    36	 100.0	    31	....................................	TTTTAGGTAAGGATTTGTATTATGCGTATCA	
   1545286	    36	 100.0	    29	....................................	TGGGTTCGAAACTATTATGAATGGCACTA  	
   1545221	    36	 100.0	    29	....................................	AGCGCGGATTTGTTACAGAAGAAGAATTC  	
   1545156	    36	 100.0	    30	....................................	TAGGGTATCTGTTCCAACCTGGTGGCTGGT 	
   1545090	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	 100.0	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC	                               	       

# Left flank :   ATTATATTAGAAATGAAAAGCAATTATTGACAGCAGAGTTTATTAATCATTTGGTATGGGATGCACCACTTAATTTTGAAAAGCATGAAATTAAACGTAGCTTAGAAAAAATTATTCAATTATATCAAGAGGTCATTGAATTAACACCGAAGATATCAAATTATAATTTAGCTGATATCATTGTGTTTGAGCCAATAGATATCTATGTTGTCATAAGATACCTTAAACATGCAAATCAAGATTTTGTATTGGATATCCATTATGATAATTTACCGATTGCTGTAGCGAAATATATCAAAATGTATGATTTGAAGTTTAATAAATAAATCTAAAAGCTTATTATAGGGAAGGGTTCTAGCGCTTGGTCAATTGACTTGTAAATCAATCTATTAATCAAGCGCTTCTACATTATTTTAAATAAAAATAAACGAAAATTTAAAAATGTCTAACATAAACTTGCTTATAATAATCATAAAAATAAGCTATAATTATGGCTAGAG
# Right flank :  ACTATGCAGAGTTCAAAAGATTAGTAGCCCGTTTTAGTACTTTGTAATTTTAAATGAATACTTATTACTGATTGTTATAAAATTTGTTTATATAAAGACAGAGATGTTTTCTAAGATACCTCGTGCTTTTTATTGATTGTATAGCACAAAAAGTCAGAGAAAAATTTGTGAATGTTTTTAACATTTGATATTAAAAAGGACAAAAAACTTAATTATCATTATAACTATGTAAATGATTATAAAACTTGTGTCTTTATATGCAGTACTCTAAGTTTAATAAACAAATTAGGATAAATTTTAAAATTGCTCAAGACTCATATAATTCAATATATGAAAAATGCAAGAATACTAAAATCAATTGACAAGTATTCTTGCTACTGGTAAACGTTGTGACATAAACAATACGGTAGCTTTGTCTATAAAAGTATAAGCTCATTGATGTGAATCTGCTATATACATCAATGAGCTTTTATTTTTTAAAGTACTTGTAGAATGAATAC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-3.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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