Array 1 84301-82519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHC01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2120 NODE_6_length_86722_cov_2.01623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 84300 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 84239 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 84178 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 84117 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 84056 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 83994 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 83933 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 83872 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 83811 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 83750 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 83689 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 83628 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 83567 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 83506 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 83445 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 83384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 83323 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 83262 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 83200 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 83097 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 83036 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 82975 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 82914 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 82853 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 82792 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 82731 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 82670 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 82609 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 82548 29 96.6 0 A............................ | A [82521] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5684-4191 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHC01000085.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2120 NODE_85_length_20526_cov_1.53158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5683 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5622 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5561 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5500 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5439 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5378 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5317 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5256 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5195 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5134 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5073 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5012 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 4951 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 4890 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 4829 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 4768 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4706 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 4645 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4584 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4523 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4462 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4401 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4340 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4218 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //