Array 1 148120-147857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDAG01000005.1 Bifidobacterium tibiigranuli strain TMW 2.1764 Bifidobacterium_spec_TMW21764_seq5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148119 29 100.0 32 ............................. CGCGGTCGAGCATCTGGTTCGAGGTCGGGTTC 148058 29 100.0 32 ............................. TAATCATGAGTCTCGTGTACGCGACCACTGAC 147997 29 100.0 21 ............................. TCGTGGGAGGCGCGGACGGTG 147947 29 93.1 32 ............A..............T. AAGGAATCATGACAGTGAATGAACTGCGCGAC G [147925] 147885 29 89.7 0 ............A.......A....C... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 30 GTTTTCCCCGCAGGCGCGGGGGTGATCCG # Left flank : TGGCTGGCGGGCACGCAGCCGCTCGGGGCGCACGCGACCATCGTAAGCTGGGATGGATCCGCGAGCGTCGACGTGAACGACGGCAAGACGCCGGTGAAGGCCATCCGGCACGCCATGACGGTGCAGGGCGACGACGGGCGATGGTGGACGGTGTACTCGACCATCGCTGCGGGCGCCCATCCGCTCGGCTCCCCCGATGCGGTGCCGCTATCCGCCCAGCTGAACGGGGACTCAGGGGCCACCTCGGCGCTCCAGTACGGCTGGGACGGGACGCTGGGGAGCTACATGCCCAGCAGCGCCGCGACCCGGCTCATCACGCAGTGGGCGAACGCGCTGTACGGCGACGACTCGGCGCTGCTCACCACGATCGTCGCGGATCCCTCTCCGGGCGCGCAATACGTCGCGCTCTCGCTCCGTGGCGCGAAGAGCGTGACAGTGGACACGGGTGCGTATCTCAACAGAGGCAAGGTGGCGCGCGACAAGCACTCGTCGTCGGTGGC # Right flank : GACGGCACGAGCGCCGGCACGCTCAGCTGGCAGAATGAAGTGGACTGGGTTTTGTTCCTTGTTGTTTATTGGGTGACTGGTGTCGCCTTGGTTTGATAATACCGTGCTTCCACCTCGGCTGGCGTGTGGTAGCCGGGGTGCTGGTGCAGGCGCTCGTTGTTCCACCAGGAGACCCATTGCAAGGTCGCCGTTTTCAACGCTTGCACGGTCTGGAACGGCGCGGAGCGTCTGACCGGTTCGCTTTTGCAGGCGCCGTCGGCGCTTTCGGCCAGCGCGAAGGCGCGCGAGTCGCCCACCGTGCCGGTGGACGCGAGGATTCCGGCCTCGTTCAGATGCGTGCCGTACAGGCTGCTGATGACTGGGCGCCGTGATCCGAGTGGCGGATCAGTCCCCGGGTGTCGCCGTGCCGGGCCGTCCAGGCGATCGACTGATCCAGGGCGACCAAGGCAAGCGCACGCGTGTGCCGGCTGGCCGATACCGCCCAGCCGACCGCGTGGCCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.22, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCAGGCGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153920-153708 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDAG01000005.1 Bifidobacterium tibiigranuli strain TMW 2.1764 Bifidobacterium_spec_TMW21764_seq5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 153919 28 96.6 32 ......................-...... GGCCGTCTATACATAAAGGAGTATACGGTATG 153859 29 96.6 33 ............................A GGACGCCGCCTGTCCTCCTGCGGCCGCCACGCC 153797 29 100.0 32 ............................. CACAGTCTCGAGCGAAGAAGAGACGCCGGAAA 153736 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTTTTCCCCGCAGGCGCGGGGGTGATCCG # Left flank : CTCATGGCAGGGCTCAAAAGCCGCCATGTCGTGCTGCGCCATCTGGCGCTTGCCGGCAAAGTCGTGATTTTGGATGAGATCCACTCCAATACAGCCTATATGAATGTGTATATGGAGACCGTGCTTTCATGGTTAGGTACATATCATGTTGCGGTCATCATGCTCAGCGCGACCCTGCCGCAGGAGCGCCGCCGTGCATTTCTTGCGGCGTATCAGAGGGGATTCGCTGCTCCGGCTCAGGTTGAATCGTTCAAGCAGCGTGCTCCGATAGAATCGACTGGCATTTCCATCTTTGCTGCGCATGCGCGATCGTACGGTGCTCGAAAAGGCGGTTCCGCAGTGCAGAGGCCACGAAGCGATGGCAGCTCCCAGCACGATACCGTCAGTCAGCAAAGCGCTGACACTTCTGCGAGCCAAGCTTTGGATATGCGGTATCCTCTGATCTCAGTAGTCAGCGGGGATGATCCGGCAAGCTCGCCAGAATACTCATGGACGATCGC # Right flank : CCGACCAGCACTCCCAGCCCCTCGGCGGAGAGCGGGTTGCCAATCTTCCACACGTTCTCGCATATGTACTTGAGCACGTACAGCGACATGGGAGGAAGAAGCAGGGAGGCGATGGACATGGTCATGACGGTGCCGCTGGTGTTGCCGTTCTGATCCACGATGTTCAGGGCCGCCATGAAGGCGTTGGTCATGGTGGTGATGAGGGTCGCGACGATGGAGATGACGGTGATGCCCGCGCATGAGGCGACCATCTGCTTGACCACGTTTTGACGGCCTTGCCGCCCTTGTCCGGCATGACCGCGTAGATCAGGAAACCGAAGTAGAGCCCGATGCCCGCGAGCAGGTAGGACATGACCGCCGCGAGCATGCGCAGCAGTCCCAGTCCAAGGTCCCAGATGACGAAGTTCACCAGGCCCGAGAGCGCGAAGACGACGGCGCCGCCGATGTCGGTAAGGCCCGAGACGCCGTGCTGCGCATTGATGGTGTTGATGGCCGCGTTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCAGGCGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //