Array 1 739528-739894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024593.1 Porphyromonas gingivalis strain KCOM 2804 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 739528 37 100.0 29 ..................................... CAATCAGACGAGTTAATAGAACACTAAAG 739594 37 97.3 29 ....................................C TTCTGAAGACATGTTTATCGACGTCGTAG 739660 37 100.0 29 ..................................... TTATTGGTGATGATAAACAACTTCCTCCT 739726 37 97.3 29 .........G........................... TATAAAAGCCACTGAAAAATATGTAAAAG 739792 37 100.0 29 ..................................... GATGGACGATGATACGGCCTATTTCGGTT 739858 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 99.1 29 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGATGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1048422-1048083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024593.1 Porphyromonas gingivalis strain KCOM 2804 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 1048421 38 100.0 38 ...................................... TCTTCTTCAATCAAGTCTGTATCAGAAGCTTGAACTAT 1048345 38 100.0 42 ...................................... AACTGGTCTAGTGCATTCTGAGCTGCAGCCTTAGCAGTTTTG 1048265 38 97.4 35 G..................................... TCTACACTGGCAATAAGATCATCATCCACAGACTT 1048192 38 97.4 34 .....................T................ ATAATCTCCAGAATCTCTCACATCAAGTATGATA 1048120 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 5 38 99.0 38 ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTCTTTTTCGAAAATCCAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAGGAAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTATAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGT # Right flank : ACTGATTACCGAGGGTTAGAACGAATGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGTATGCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACATCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTATCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCGCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACAGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1081972-1091801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024593.1 Porphyromonas gingivalis strain KCOM 2804 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1081972 30 100.0 38 .............................. GATATCGGAGGTGTCGACATGTCGGAGGTCGTATCTGT 1082040 30 96.7 36 G............................. GGTCGAGCGCCTTACACAGGCGGGCGAGCATGTCGA 1082106 30 96.7 35 C............................. CCCAGCCACACGCTGATACGGTTATATCGCAGCTC 1082171 30 100.0 35 .............................. TACCCAGCCCCAATCGAACGTAACCCCCGACGTCA 1082236 30 100.0 38 .............................. CTGGTGGGAGACGAAGATGATTTCTTCAATATAATTAA 1082304 30 100.0 35 .............................. AGTGGGCAACGATATTTTCCATCATGAGTGCTTTC 1082369 30 100.0 35 .............................. CGCCGCAGGCATCAAGGCTACGAAGCGCAACGCAG 1082434 30 100.0 37 .............................. AACCTCCATCAGCGCTTTTTTCTCGGCCGTCAAGGCC 1082501 30 100.0 34 .............................. GAGCCTCGATGCATCCCGAGGCGGAAGCCAGCCT 1082565 30 100.0 37 .............................. AGAGACTTGTGTCTGATTGTCTGTGCAATTATTTTGT 1082632 30 100.0 34 .............................. CGATCAGCTGCATAATCTGGTCGTTGATGGCGTC 1082696 30 100.0 36 .............................. CGAGGCGGACAACCCGGCCGTCAAGGCGGATCAGAT 1082762 30 100.0 36 .............................. AGCGATTGGGTACACCTTGTTGTCGAAGAGCACCTC 1082828 30 100.0 36 .............................. AGGCGAAAGAGGAAAAGAGGTCTCTTTCACAGGAAG 1082894 30 100.0 36 .............................. CACCTTTACCGCGCTGGGGCGGGGCCAGTCGCCCCG 1082960 30 100.0 36 .............................. GCTCTATAAGAGCATTATCGAGGGCGGAAAGTTGTT 1083026 30 100.0 36 .............................. CGCCGCTGGCACACCTCCCCCGTGTCAAAAGGGGGG 1083092 30 100.0 35 .............................. ATGTCGAGATCGATCAGCATCCTGATCACCACCTC 1083157 30 100.0 36 .............................. CTTCAAACTTCGCGTACCCCTTGCCCGACTCCGCTT 1083223 30 100.0 35 .............................. GCAGTAGACGATAGAAGCCTGCGTGTCTGTTGCCC 1083288 30 100.0 36 .............................. GACCCATCGAAGCACGCGGATATCACCTTCGCCGAA 1083354 30 100.0 36 .............................. TTGTACCCACGTGCACGCTGAATAACCACAAGGTCT 1083420 30 100.0 37 .............................. TGTCAATATGCCGGCGATTTGATCCCAGATGCTTCAC 1083487 30 100.0 36 .............................. ACAGCCATCGAATGTCCATTGAGTCGAACGTGCATA 1083553 30 100.0 36 .............................. GTTAGGAGGTAGCCGTGCCCGGGGCGGGTGGCTATA 1083619 30 100.0 37 .............................. GCAATTTCCTTTGCGATGCCGATTCGTTCCTCCCCTT 1083686 30 100.0 37 .............................. TATCCGCCTCGCCAAATTGGCGCGCGGAATAACAGAG 1083753 30 100.0 36 .............................. GCTGATATCCCCCACCAGCAGCATGCTTAATTCCTT 1083819 30 100.0 35 .............................. TGCTTCTGTCATCCGGCAAATTAGAATACTTGAGC 1083884 30 100.0 37 .............................. AGCGCGCCATCCCTGAAGTGCCCGGCAAGGCATTTAT 1083951 30 100.0 35 .............................. CTTGTGTAGAAATTTGTCGTTGGCGCGATGAGGAA 1084016 30 100.0 36 .............................. TGGTTCTAAGCCCACAAAGATATTCCCAAACAAAGT 1084082 30 100.0 36 .............................. CCATGCGTGCTCAGGAATCTATCCAGTTGCTCCTTG 1084148 30 100.0 37 .............................. ATCCACTTGCTGCCGTCGCCGGCAGCGTCTACGTGTA 1084215 30 100.0 37 .............................. ATCCACTTGCTGCCGTCGCCGGCAGCGTCTACGTGTA 1084282 30 100.0 36 .............................. AGCTCGAGCCGGAGATGGGATACGTGGATGATTCTA 1084348 30 100.0 35 .............................. GCACCTCTTCGGGATCGAGCACCCCGTCTTCGCGA 1084413 30 100.0 35 .............................. GCACCTCTTCGGGATCGAGCACCCCGTCTTCGCGA 1084478 30 100.0 36 .............................. GGCGACCGGGTACACATTATTGTCGAATAGCACGTC 1084544 30 100.0 35 .............................. TCAATTTTGTTGTCAATTTCCCGTTCTTGGCCCAA 1084609 30 100.0 36 .............................. CCATGAATTGAGGAAGAGGGGCTATTTTATAAAGAA 1084675 30 100.0 37 .............................. TCGAGATTTTTTTGTTTGGGAAAAAAGAATCTCCGTA 1084742 30 100.0 36 .............................. CTTGCTCTAATGAGCCTAAGCCTGTAGAAGAAACAA 1084808 30 100.0 37 .............................. ATTGTCAAATAGAAGAATCGGCTTAGCGTTGTAAAAG 1084875 30 100.0 37 .............................. TCGAGGAACTGTGCATATACAAGCATATTTTCCCGAC 1084942 30 100.0 36 .............................. GCGTTTGTGCCAATTTTTTCCAAACTGGAAAAATTC 1085008 30 100.0 35 .............................. TGGAATCTCCTTTGATCCCATAGTTGTTTTTTGTC 1085073 30 100.0 34 .............................. ACCAAGATGTCAAGAAGTCCATCATGATGATTGT 1085137 30 100.0 34 .............................. TCGAACGCCTGTACATCGGCTATCTGAATACCGA 1085201 30 100.0 36 .............................. CTTGTAGAACTCGCTGACATCGATAAGCCAACCCGA 1085267 30 100.0 35 .............................. CTCCTCCATCGAATCGGGTATCTTGATCTCCACGT 1085332 30 100.0 37 .............................. TTCGAGGACGAAGAAGGGAACGCCGTCGTTCTGAACA 1085399 30 100.0 36 .............................. AGGGATTATTGAATATTGTGGAGAAGCTATATCAGA 1085465 30 100.0 34 .............................. CGGAAAAACAGAGGAGGAGATTGGATGACGGCTG 1085529 30 100.0 36 .............................. ACAAGAAGATTCTCGACGCTCTCTACAATGAGAAGC 1085595 30 100.0 35 .............................. TTCCTGTGAAGCCGACCACCCGTCCTGTAACAGTG 1085660 30 100.0 36 .............................. CATAAGATGGAAGTGGCAAAGGCGAAAATAGACGAA 1085726 30 100.0 36 .............................. TGGGGGCTTTTTACGCACACTATATCGCAGAGCATA 1085792 30 100.0 36 .............................. CTCCACCGTTACCGTACCCGCCTCGCGGCGCACAAC 1085858 30 100.0 37 .............................. ATATTGCCCGATTCAGGCGTATGAGGGGTACGACAGC 1085925 30 100.0 36 .............................. CCTCGATGAACTCCACCCCTGTCACGCCCAGCTCGG 1085991 30 100.0 36 .............................. AAAGCGGAGCTGGTACAAGACACGCACGGGCAAAGG 1086057 30 100.0 16 .............................. TGTGTGTGTGTGTGTG Deletion [1086103] 1086103 30 100.0 36 .............................. CTGTATGGTGCAATTGAAATGCAATTTCCTTTGCGA 1086169 30 100.0 37 .............................. TTCAACCTCCGCCCCGGCCTCCCCGTCAGCAATCAGA 1086236 30 100.0 35 .............................. TGTTGCTGCCACGGGTTATTGGGGTCGAACACACC 1086301 30 100.0 36 .............................. TCGAAAGCTCCCGGAAGTATCTTCTCCCTAAATCCG 1086367 30 100.0 37 .............................. CAGGAACAGGCGATCAGGGAAGAGATAGCGAGGATAC 1086434 30 100.0 36 .............................. AGAATTATCTCAGGCTCTTAGCGAAGAGGGATTTGT 1086500 30 100.0 36 .............................. GGCTTCCTCCTGTAAGGCCCGTTCCTCCTCCGTGTA 1086566 30 100.0 36 .............................. CCCAAGCCCGAACGGTAGCACTGCCACAAGCCCGAA 1086632 30 100.0 35 .............................. TACTGTTACAATTTTGTCTGTTTTAAGTTTTACAG 1086697 30 100.0 37 .............................. GTATTTGTCTCTTGACTAACCCCGTGATAGCGTCAAG 1086764 30 100.0 36 .............................. CTCAACACGTCGGAGGAGGGCCTTGTGTTCGCCAAC 1086830 30 100.0 36 .............................. ACGCTGGAAAAAGATTACTCGGTTTCGGGAAAGGTT 1086896 30 100.0 36 .............................. AGGCTTGCCCGTCTTTCGATGTTCCTCGCTGGCTAA 1086962 30 100.0 35 .............................. ATGGAAATGCTATTGCAGATTGTACAGATACTATT 1087027 30 100.0 36 .............................. TCGGCTGTGGGGGTAGAGCCATGCCGTGCTTCAGCA 1087093 30 100.0 35 .............................. GCGGAGGAATCGAACCTCCGTATAGAACTATCTAC 1087158 30 100.0 36 .............................. CACAAGCGTGCATGGTCTCGACGAGAAGCAGGAGCT 1087224 30 100.0 36 .............................. ATGTGTTTGTCACCGCCCCAGGCATGACTGCTACGA 1087290 30 100.0 37 .............................. TAGTTACAAAACATAAACAAGAAAAAAGAATTTTCAT 1087357 30 100.0 37 .............................. CCCTCGAGCCGGGCGCAACGGTTGCCGATGCCAGAAA 1087424 30 100.0 36 .............................. TACGGTAAGCCCCGCCAAGGATATGTGGAAGTGCTT 1087490 30 100.0 37 .............................. AGATACTCAATCGCTATGAGACCGGATATGCTCCTGC 1087557 30 100.0 35 .............................. AGATTGGATGCTTCTCAACAAATGTTTCTTACTTC 1087622 30 100.0 37 .............................. TGTTTGGAAATCAACTCAGTCTTAATGTTATTACAGA 1087689 30 100.0 36 .............................. TATTTCTATAAGTAAGTTTTTTGTTAACTATACGTC 1087755 30 100.0 36 .............................. TTCCCTACGACCGAAACGGGAACACTCTCTTTTACA 1087821 30 100.0 36 .............................. TATTTCTATAAGTAAGTTTTTTGTTAACTATACGTC 1087887 30 100.0 36 .............................. TTCCCTACGACCGAAACGGGAACACTCTCTTTTACA 1087953 30 100.0 34 .............................. AAAGATGAATCCGGGTAGGGCATACTCGTGAAGT 1088017 30 100.0 34 .............................. TAAAACAAAAAATTTTAGAGATTATGTTACGATC 1088081 30 96.7 36 ..............G............... ATTGTTGCCGCCAGCCCACCGACTCCACCCGCCGTA 1088147 30 100.0 39 .............................. GCTCGGGTTGTGCGCTCGGGTTGGGAACGATGCTGCACG 1088216 30 100.0 38 .............................. GGACAATTCTTGCTCCGCCGAGGCGGGCTTAAGCACCT 1088284 30 100.0 37 .............................. GCCAGCTTCTTGGCTTCTTGGCGCGCTTGGATAACCT 1088351 30 100.0 35 .............................. TTTTTGGAAGATGTATCGTGGAGAGGTGCGGGCTT 1088416 30 100.0 36 .............................. CATGCCCCTTCCACGCGGATAACAACGCTTCTCTGA 1088482 30 100.0 37 .............................. GCCACAGCCCGAAGAGCACCCGTCCCTTGCTGAAGAG 1088549 30 100.0 37 .............................. GAGCAGCTGCGCAATGGGTGGAATCCGTTTATTGAAG 1088616 30 100.0 36 .............................. CGTAACCGCCTCTGTAGACCGCTCCACGCAGTCGTT 1088682 30 100.0 36 .............................. TATTTAACGACGAGGACGGCGTGCGCAAGGCGGAGC 1088748 30 100.0 36 .............................. TCGTTATGACGGGCGACTGTATCCCTTGCGTTTACA 1088814 30 100.0 37 .............................. AACCAGTTTGGGCTGGAGGCGTCGGAGGCGGCACGGG 1088881 30 100.0 36 .............................. AATACAAGAAAGTACTCGTGCTGTCGACCCTAAAAT 1088947 30 100.0 36 .............................. AAACCGCCGACGGAGCACCGGCCGGCACCATCCGCA 1089013 30 100.0 37 .............................. CCTCCGACCCCTTTTGGGCCGAGTACTACCCGCCCAA 1089080 30 100.0 35 .............................. GGCCGAGGCGTTCGCCAAATCGTGGAGGCGCGGAA 1089145 30 100.0 35 .............................. CCGCGTATATAACAACGCGGAGATAACCGTATCGC 1089210 30 100.0 35 .............................. GTGGAGGGCCTCGGAGCGCATTTTTTTCAGATTCA 1089275 30 100.0 36 .............................. TTCATTCCGTATCTTCTGACTATACGTCAAAAGATA 1089341 30 100.0 36 .............................. ATTGTGCACCCCCTTGCGGTCGCATGGGGGTACACC 1089407 30 100.0 36 .............................. CAAACTTGTCGTCGTAGCTATCAAGGCTACAACGAT 1089473 30 100.0 35 .............................. TTTCAGCGAGGTCTACCACCTCCGCGCCGCCTGCA 1089538 30 100.0 36 .............................. CGAGCAGGCTGGAGTGCAGCCTTGGAATTTTTGTTT 1089604 30 100.0 36 .............................. ACGAGGCCCGGCAGCGCAGCAATGCCATCGAAGACG 1089670 30 100.0 35 .............................. TGTAAGTATTGCGACTCAGTAGATACAAGAATTGA 1089735 30 100.0 36 .............................. ACGCTCGACGAGGGGGTACTGTACCCATATTGATTG 1089801 30 100.0 36 .............................. CATGTCGGAGGAAGCTTCCTTCTTCAATCTCAATCT 1089867 30 100.0 37 .............................. CGCTCATGGCAGGTTATCCGTGAACTGACAGGAGGAA 1089934 30 100.0 37 .............................. ATGATGAAAAAGATAAGTCCAGCTCTAATCCAGAAGA 1090001 30 100.0 35 .............................. AAACATGTCGTCGTAGCTATCAAGGCTATAACGAC 1090066 30 100.0 35 .............................. CTCCTGCCCCGGTGGATATATTCTTGAGTGCCGTA 1090131 30 100.0 36 .............................. GCACAGCGTTTGTGCCACCAACCCTTGAAGAAGTTA 1090197 30 100.0 36 .............................. ATTCGGAGGGCCTAATCGAGAGCGAGGAACGACTGC 1090263 30 100.0 34 .............................. CTGCCAGCGGGAATGTCTGTGGCAGATTTTAGAA 1090327 30 100.0 34 .............................. GCACTTGATAGACGCGCTTTCCGGAAAAGGCACA 1090391 30 100.0 36 .............................. TCCGGAGGCGTTCCATGACGGCCTTTTCCTCCTCTG 1090457 30 100.0 36 .............................. CTGTACCTCTCATAAAGGAATACAGGGATCTATTTA 1090523 30 100.0 36 .............................. ACGAATGGGCGCGCGGGATGGCGAAATCGTCCAATA 1090589 30 100.0 36 .............................. GACGTGCAGCTGGAGATCGAGGAAAACACCGCCTTG 1090655 30 100.0 35 .............................. GAAACCAACGCGCTAATTATCAGCGCGTTAGTTTT 1090720 30 100.0 35 .............................. TCACTACGATATAATAGAGTGGCTGCAGCCTGATT 1090785 30 100.0 36 .............................. TCCCGGACTGGCGATTTACGCCGATCCGGATTCGTC 1090851 30 100.0 36 .............................. TGCAGCTGATCGGAACGGGTAATATCCGCTGCATCG 1090917 30 100.0 36 .............................. TCCGCTCTTTTACGAGCGTGCAGACGGCCCTCAATG 1090983 30 100.0 36 .............................. TTGCGACCTGTGAGAGTGCACCTTTTCACCTGTCCG 1091049 30 100.0 37 .............................. AGAATACGGTCGTGCGCAATATCGAGGCGATGGAGCT 1091116 30 100.0 35 .............................. CGCAAATGTCGCTGATAATCGCGGGTGCCCAACTC 1091181 30 100.0 35 .............................. ACTCTCAATCAGCACGGGAATCAGATAAATCAGCA 1091246 30 100.0 36 .............................. CATCCATTCTCGTGTCCACTCAGCAACAGTACCTGC 1091312 30 100.0 36 .............................. TATAAAGAAGAGGAATAGATATGAAGCTAAAGTATT 1091378 30 100.0 37 .............................. GGGTGGAAGCAGGTCGGATATACGGACATGATCCACT 1091445 30 100.0 35 .............................. TGACCAGAAACCATGCGGGGGTGGGTGCCCAAAGG 1091510 30 100.0 36 .............................. TCTCTGACAAGGTGGCAAACCTGTACGAGGAAGCAA 1091576 30 100.0 36 .............................. AAAGGAGATAGCTCCTTTTTTATTTGGGCTATCTCT 1091642 30 100.0 34 .............................. TTTCAATGGAATAGAATCAAGCAGGGCTACCAAT 1091706 30 100.0 36 .............................. AGGTGATGAAAAATCACTGGAAGAGGCAGTTCAGTA 1091772 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 150 30 99.9 36 ATTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TCGGGAGAAACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATCGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGTGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATACTCAAATATACAAAATAACTCCCTACTATACAATGAATTAACAAACAAAACACACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //