Array 1 108282-105264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVN01000004.1 Salmonella enterica subsp. enterica serovar Liverpool strain BCW_2904 NODE_4_length_178713_cov_0.177147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108281 29 96.6 32 .............T............... GACGTCGCTATTGATCGGGAAAAGGAGCGTCG 108220 29 96.6 32 .............T............... TATTCCTTCAGGTGATAAGGACGTTCTGTTTG 108159 29 96.6 32 .............T............... CCCCGCGAGAAAACATCCAAATGCATTATCTT 108098 29 96.6 32 .............T............... GATCCGCCAGGCGATAGCGCGCGCGGGTCCAT 108037 29 96.6 32 .............T............... TACCTACCGAAAACCTCTTCTCCGGCACCGCT 107976 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 107915 29 96.6 32 .............T............... GTGGTAATCATGACGCATCGTCACCACGTCAA 107854 29 96.6 32 .............T............... ATAACGACGACGATATCGCCGTTATACTGGGC 107793 29 96.6 32 .............T............... TTCATCAATTCGGACAAAGTCGGCCACGATGC 107732 29 96.6 32 .............T............... GCGAGGTTCTGCGCCCTGCTTCCAGTTCAAAA 107671 29 96.6 32 .............T............... ACGCGGTGTATCAGCAAACCTTCGATGCGGAG 107610 29 96.6 32 .............T............... GACGTTGTAGACCAGCGCCTTACTGGTGATGA 107549 29 96.6 32 .............T............... CGACCCCCCATTTTTCTGAATCGTAGACGAAC 107488 29 93.1 32 ............TT............... CAATTTGTTTGTTATCCCTGGTGAGTGCAACA 107427 29 96.6 32 .............T............... CGTATTCCCGGCACTGTTTATGGCATTGGCCC 107366 29 96.6 32 .............T............... CCAGCAGTCACTATTGATTCAAATGTTTTATA 107305 29 96.6 32 .............T............... TACCAGACCATCATTGATTTCAATGTAATTAC 107244 29 96.6 32 .............T............... CAGGGCAACGTCGTCATCGATGAGGCTGCGTT 107183 29 96.6 32 .............T............... CGGCCCCGTATAAATCTCGTGGCGCACAAATG 107122 29 96.6 32 .............T............... AAGAACGCTGCTGGCAGTCTGACCCTATTGAT 107061 29 96.6 32 .............T............... CGCCGTCACATCCTGATTTATCCAGTGTAGGG 107000 29 93.1 32 .G...........T............... TTTTTAGTGCGTTTTTTAACCTTTGGTGGAAT 106939 29 96.6 32 .............T............... GGAAAAACACGTATCTGGTGGACAACCGGTGC 106878 29 96.6 32 .............T............... GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 106817 29 96.6 32 .............T............... GGGCTTTCCCTTAGTGCCTGGACTATTGAGGC 106756 29 100.0 32 ............................. CGCAAGAAGGAGAGCAGTTTGCTCACTACCGG 106695 29 100.0 32 ............................. CGATTTATGTAAAGGGTGGCCTGGAAGGGGAT 106634 29 100.0 32 ............................. CAATGGGCGAAGGGCAGCGAGTTCGGCTGGGT 106573 29 100.0 32 ............................. TCGTAAATCTGTTTCAGTGTTTTAGCGCGCAG 106512 29 100.0 32 ............................. CTCTCGCCGCAGCTACGGCACAGGGCGCAAAA 106451 29 100.0 32 ............................. CTATTTTAATTTGCTCTATGTTTGTGCTTGCT 106390 29 100.0 32 ............................. GATTGCCTTTACCGTCCAGCAATATATTTATA 106329 29 100.0 31 ............................. GGGATACGGGTAGTTTGAGTGATGCGGGGGG 106269 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 106208 29 100.0 32 ............................. ACAAATCGCGAACTGGTCGATGCGGCCATTGA 106147 29 100.0 32 ............................. AATATTCAGTTTCAAATCGATCAATTGTGCGT 106086 29 100.0 32 ............................. GATACTCTACGCGATCCACATACATGGGCCCC 106025 29 100.0 32 ............................. TAGGTTTAACTAAGCTAATAAAATGGGTCCGA 105964 29 100.0 32 ............................. GTAATTTCCCAAAATTTGAATCAGACTTAATC 105903 29 100.0 32 ............................. TGGCCTTCCTTCTACCGCTTAGCAGAAGAATG 105842 29 100.0 32 ............................. CGCTCCTTCAGGTCAATGATTTCGTGAATACG 105781 29 100.0 32 ............................. TGCAGTCAAAACAGATTGTTCGCGAATCGGGC 105720 29 100.0 32 ............................. AAAAACACTTCCGTAGCCAATACCATTGAACA 105659 29 100.0 32 ............................. CAGTAGGCCGCGCTTACTATCTCAGAGAGGCT 105598 29 100.0 32 ............................. CAGACCAGCCGTAACATCATGCTGCTCATCAT 105537 29 96.6 32 ...C......................... TCTGGTCATAACATCGCAGCAAAATCAAAAGA 105476 29 100.0 32 ............................. GGGATATTTAGACGGGCGCAACGTGCGGAACT 105415 29 100.0 32 ............................. CCCTGCGTCAGCGCAGCAAATGTCACCTCATC 105354 29 100.0 32 ............................. CAGGGTAAGTCCCGGACGGCATCGTTGCTGAA 105293 29 100.0 0 ............................. | A [105266] ========== ====== ====== ====== ============================= ================================ ================== 50 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126741-124578 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVN01000004.1 Salmonella enterica subsp. enterica serovar Liverpool strain BCW_2904 NODE_4_length_178713_cov_0.177147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126740 29 100.0 32 ............................. ATTGATGATTTTATAGCTACTACTCCATATCA 126679 29 100.0 32 ............................. TTTGGTGCACCGCCAATGTCTCGTTATCAGAA 126618 29 100.0 32 ............................. ACCCGGCAGGAAGTAGATTCATTTGCTGATGA 126557 29 100.0 32 ............................. GCAGCGTTACAACCTGATAGAATGGGGGTATT 126496 29 100.0 32 ............................. GGGGTATTCATAAAAGTGTCTGTTGGTGAGGA 126435 29 100.0 32 ............................. ATGGAACAGCTATGGACGGCGAACGCCACCGC 126374 29 100.0 32 ............................. AGCGCTAAAGAAGAAAAAGAGAAAGCAACTGA 126313 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 126252 29 100.0 32 ............................. TCGCTTTTACGTATATTGCCAGGATTATTATT 126191 29 100.0 32 ............................. TTATGAGCGCCTGCGGCTCGCCGCTACCGAGC 126130 29 100.0 32 ............................. CTGGAGTCTCTGTTTGTGGTCTTGGGAACGCA 126069 29 100.0 32 ............................. TGGTCACTACACCAGCGGGAGAGGCAACTTTA 126008 29 100.0 32 ............................. ACGCTTGCCAGTGGTCCGTTTGGCAAATATGC 125947 29 100.0 32 ............................. GTGTCTCGTTGCGCCACCGGCAACTCGTGGCC 125886 29 100.0 33 ............................. CACCTCATGAACCGCACCGCAGCGATTCACCGA 125824 29 100.0 32 ............................. CTGCTGATTTTCCTGGTGTTAAAAGCGGTGAG 125763 29 100.0 32 ............................. TCAGCCCCGTTACATTCCCGTCCAATGACGAA 125702 29 100.0 32 ............................. TCTGTTGCTATCTGGCTATCGGCATCGCATTC 125641 29 100.0 32 ............................. GTGACGGGAACCGAAAACGCGCAGGATGTAAT 125580 29 100.0 32 ............................. TCAGTATCATGATCACTGGCTCCCGACTGGGG 125519 29 100.0 31 ............................. ATCCCCCTGAACGTTACCGAGTACTGCCATT 125459 29 100.0 32 ............................. CGTAATGACCCGGCCGCAACCGAAGCCGCTCA 125398 29 100.0 32 ............................. CCATCGAGCCTGCCGACATCGCCAGTGATTCA 125337 29 100.0 32 ............................. GCTCTATCATTCGTCCTGCGTGCTCAAAACAC 125276 29 100.0 32 ............................. GCTGTATTGTTTGCCGTAACGAAATGAACGTT 125215 29 100.0 32 ............................. GGATAGGTGAGGGGGTTGTCTTCACTGCATCA 125154 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 125093 29 100.0 32 ............................. CGCTCTTCGTGGCGCTTGTTTGCTTATGGAGG 125032 29 96.6 32 .T........................... CGGCACCAGCTAGTGGTGTTTTTGCGGGTAGA 124971 29 96.6 32 .T........................... ACGGCGGAACGCTGGCCGATAAGGTACGTTGC 124910 29 93.1 32 .T.C......................... AACCAAAACAGACGCGGGGCCATTCGCTACAC 124849 29 93.1 32 .T...........T............... GCGCGAGTAGACGAGGCTAGCTGCAATATCGC 124788 29 93.1 32 .T...........T............... AAAACATAGTGAGGTATAATCCTTAACAGGTT 124727 29 96.6 32 .T........................... AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 124666 29 96.6 32 .T........................... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGA 124605 28 79.3 0 .T.............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.5 32 GCGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGGGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //