Array 1 204-878 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJON01000087.1 Tepidimonas charontis strain SPSP-6 Tepi_SPSP6_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 204 37 100.0 35 ..................................... CTGGAGCGAGCTGCGCGCGGTGTCGATTTCGTCCA 276 37 100.0 36 ..................................... GCGTTCCACGCGGTCGATGACTGCCAACCAGTAGCC 349 37 100.0 33 ..................................... CCGCCGGATATCCTGTTGACCCACTCGTGGCTG 419 37 100.0 34 ..................................... CGCCGCAGCACAACATATCATTCCACACCCGCGC 490 37 100.0 33 ..................................... CTGTGGCACTGGGTTCATTTTTTCATCCAGGAC 560 37 100.0 35 ..................................... GATGCCGTCTCGGCGCCCTTTGCTGGCGCCTTGGG 632 37 97.3 34 ..............T...................... TTGACGGTGGCCGCATACAGGTCAAAGCACGCCG 703 37 100.0 32 ..................................... ATGGCCTCGGCGTGCATACCGCGTCGCAGCAG 772 37 100.0 33 ..................................... CAGGTTTTTGGCCGCGGTGTTGGTGTTGGTGTT 842 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 99.7 34 GTCTAAACCACAGACCTGATGAAGAAGGGATTAAGAC # Left flank : CAAGCGGAAGAAGTCCTCGGTGGCGGGGCAGGCAAACATCGAAAAACTCCCAGAAAACGGCGCATCAGACCATCAAATCTGGGGGAAATTGTACTCGCAAACAGACAATAACACAAGAAAAATCATGATGTTATGAATATTTCAGGGGCGACGAAGAAGGGATTAAGACCCGTCGAAGAGGCGGACTTTTTGAGGTGGGCGCCG # Right flank : CCTTTGTGGTATTTTCCAAGGGCGCGCACTGGGCAGTCTGACAGTTAGCAGGACCAATACGTCGCCGGGGGCCGGTTATGCCACCGCTGCGTCTGTGCCAAACCTTGCAAGCTTGCAGTCCTGGACAAGTGACCATGCGTGATCTTTAATGCGTTCGTTGCTACGGCGTGGCATTCACTTGGGAGCAAAACCATGCGTTGCAAAATCTTCATCCTCATTTCGGCTCTCGCGGGGCTGACCAGCGGCTGCGCCTCCGTCGTCACCGGTCAAAATCAGCCCGTGAGCGTAGAGACCCGCCACGAAGGCGAGACGGTTACCGGTGCCCACTGCAAGCTCAACAACGACAAGGGCACGTGGTACGTCACCACGCCAGGCACGGTCACTGTGGTGCGCAGCTACCATGACCTGCATCTTCGCTGTGACAAGGCACATTTTTTACCCGGCATTGCCACCGTTAAGTCCACCACCAAGGCCATGGCGTTTGGCAACATCCTGATCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAACCACAGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2553-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJON01000055.1 Tepidimonas charontis strain SPSP-6 Tepi_SPSP6_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2552 37 100.0 35 ..................................... TCCGCATTCGTGAATGCGCTAGGCATAGAAGTAAA 2480 37 100.0 33 ..................................... ACTCGACCGCCACGAGTAGCCACCGGATGGTGG 2410 37 100.0 32 ..................................... GGCGGCGTCTTGGGGGACCTCCCCCTTGAAGG 2341 37 100.0 33 ..................................... ATTGGGGGCAGGTGATCTGCGCCTGGTAGCAGG 2271 37 100.0 35 ..................................... CTTCCGTCTCGATGACGGTTTCATGCGCCGTGACT 2199 37 100.0 34 ..................................... ACCTTTTGCTTTGATGAAATTGTCGATAGCTACG 2128 37 100.0 34 ..................................... GTTTTGCAATTGCGTAACGTACACCGCCCGCCCC 2057 37 100.0 33 ..................................... TCCATCGACGATGCATTAGTAACCCGCACCGGG 1987 37 100.0 33 ..................................... TTGCCCTTCGCGTTCATGACGACGAGCTCGTTG 1917 37 100.0 35 ..................................... GAGGAGCCCTTCGTCCTCGATGACGGCGTCATCCG 1845 37 100.0 36 ..................................... ACTATGGGGCGATACTGACCGTTCTGAAGCTGGGAC 1772 37 100.0 33 ..................................... CTTCGGCGCACCGCCGGATGATCTCGTACACGA 1702 37 100.0 34 ..................................... CCCGCAAGTGCGGGCCTGATCCACACCCGCACCG 1631 37 100.0 33 ..................................... GCCCGCAGCTCGTCGATGATCATCGAGCGCAAG 1561 37 100.0 34 ..................................... GGTAGTAGCCCTCGGCAATCGCAAAGCGCGGCCC 1490 37 100.0 36 ..................................... TCAAAACCAACGGTGGTTTCGATGTACTCGTGGTGC 1417 37 100.0 33 ..................................... CGCGCATGCGCCCCGAGTACTGCTCGTAGAGAT 1347 37 100.0 32 ..................................... TTCGGCTGTGCTTGACTTTGCGGCTGAGGGGG 1278 37 100.0 34 ..................................... AGTGCGCACAGAACGGGAGGAGACAACCCGAAAG 1207 37 100.0 33 ..................................... GCGCCCAGCGCCAAATACCCGCACACGGTCGCC 1137 37 100.0 31 ..................................... AAGCCGGAAACCTCCATGATGAGCACCAGCA 1069 37 100.0 33 ..................................... AAAGTCCGGGTTAGGCAGTCGCACCGGAATGTC 999 37 100.0 35 ..................................... CGGGCCAAGCTTTCAAGCGCAGCAGCGTGCGCAGC 927 37 100.0 34 ..................................... ACCCAGGTCGATCGGCGCATCAAATACAACGTCT 856 37 100.0 32 ..................................... ACCCTGTCACGGACGGTTTTTTCTTGATCAGT 787 37 100.0 34 ..................................... AACGCTGCGGCTGCTTGCTTTACGGCATCGTGCG 716 37 100.0 34 ..................................... GCATACAAAAAAGCCGGCTTTACACCGGCCTCGG 645 37 100.0 35 ..................................... TCGGCGTCGAGGTGGCGTTTTTGCGTCATCGCCAG 573 37 100.0 35 ..................................... TCGGCGTCGAGGTGGCGTTTTTGCGTCATCGCCAG 501 37 100.0 33 ..................................... CGCGCCGCGCGCGGCGCCGATGTCGTCCAGGCG 431 37 100.0 33 ..................................... CAGGCGCTCGACCCACTTGTGGCCGAAGAACGC 361 37 100.0 32 ..................................... ACAATCACCCACACCTAGCGACCAAGGCACAA 292 37 100.0 33 ..................................... GCAGCCGTCCGCGCTATCCTTTCCCGCCCTTCA 222 37 100.0 33 ..................................... CGAGGGGCTTGCCCTCGGCCCGCGCCTTGAGGC 152 37 75.7 0 ...........................TCG.CCCTGA | ========== ====== ====== ====== ===================================== ==================================== ================== 35 37 99.3 34 GTCTAAACCACAGACCTGATGAAGAAGGGATTAAGAC # Left flank : ACCGTGCAGCGCTTTTATGCCAGACCAGTTGCCGCCCCGGCCATCCCCTGCGCCGATTCCGCCAATGGCACGCCCCTACTTTTTATCACCATCATCAGGGGGGTTATGAAAACTTGGGCCCCGTCCGCCACCTCCGACTCTAGCGTGAGTGTCGCGCCAGCGACTCTCGAGGCTACCCTCCCCTGCGGGGGAAAGTTGGGGGGAGATGGAACCGTCCATGGCCGCCTCCTGCACTTTCACCCATCAGGGGCGGCTCATCGGCCAAAAACAGCAAGGCGAAGCATCAAGCAGCGTGAAAAAAGCCAATGTGCCTGAGCAGCTTGTTATACAGAAGTTCTTTAATGGCGAATGCGCTCGCCTACAGTGCGGCGAAGACGCTACCTGCCACGGTGCCGGTGGGCTGGCACCTGGTATGTCTGGAAGGAAACTTTTCGAGGGGCTCAAAAACTGTCAAGGGTGTCTGCAAGATGTTGATTTTGATGATAAAATGGACATGAGCT # Right flank : AAAAATTCATTTTCACGCCGCCCTTAGCCGCAGCTGGGCAGGGTTGGCGCCACTGGTCTCGGTTGGCCGCCGCTGGGCGAGCCACCGGCCGATGAGGCGCACGGCCGCAATGAGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAACCACAGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 29033-29915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJON01000040.1 Tepidimonas charontis strain SPSP-6 Tepi_SPSP6_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29033 29 100.0 32 ............................. ACCGCGACGCCATCAAGGCGGCCTTGTCCGAG 29094 29 100.0 32 ............................. TGATGCTAATCTGCGTTGGCGTAATAGCCGAC 29155 29 100.0 32 ............................. CCTGGACAGTGTCCAGGAGCTGGTCGACGCCA 29216 29 100.0 32 ............................. CCAGCTGATCCGCTGCTGCCGTGGCTGATCTG 29277 29 100.0 32 ............................. TCAACGAGCTGCAGACGACGATCAACCATCGC 29338 29 100.0 32 ............................. TTCGGTAGCAGTGGTGCCGCCGTCACGTACCG 29399 29 100.0 32 ............................. TCAACGAGCTGCAGACGACGATCAACCATCGC 29460 29 100.0 32 ............................. TTCGGTAGCAGTGGTGCCGCCGTCACGTACCG 29521 29 100.0 32 ............................. TCAACGAGCTGCAGACGACGATCAACCATCGC 29582 29 100.0 32 ............................. TTCGGTAGCAGTGGTGCCGCCGTCACGTACCG 29643 29 100.0 32 ............................. TAAGGAGCGGCGGACATGCAAAAAGCGATTAT 29704 29 100.0 32 ............................. GCGGTCATTGCCTCCAGCACCGCGCTCAACGC 29765 29 100.0 32 ............................. GGCGATGCAGGCGGTGGCAGCCAGCAGCACGG 29826 29 100.0 32 ............................. TACACGGGCCGCTGCGGCGAGTTTGGGCACGA 29887 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTCTGCCCCGCGTGAGCGGGGATCGACCC # Left flank : CCTGCCCTTGGCATTCGGTGCCGTGCGCGCCCTGCGCGAGGGCGAGGCCGACCACCTGGAGCGCGAGGTGCGACGCCGCGCCGCCAAGCTGTTCCGGCAAGAGAAACTCATTCCCCGCATGATCGACCGCATCAAGGAGCTGTTCGATGTCGATGACCGTGGTGGTGACGCGTAACGTCTCCTCCCGCGTGCGCGGCTTCCTCGCCTCCGCCATGCTGGAGCTGGCCCCGGGCGTCTACAGCGCGCCGCGCATCTCGCCTGCCGTGCGAGACCGTGTTTGGGACGTGCTGAAAGACTGGTTCCCCAACGAGCGGGACGCGTCGCTCATCATGATCTGGCAGGAACGAGACGTCCCGGGCGGCCAAGCCGTGCGCACGCTCGGCAGCCCGCCCATCGACTTCGTGAATGTCGACGGCCTCGTCCTCGCCCGCCGACCGCCCCCGGTCGGAGCTCCTTAACAATCCGGTTTCTCTTTTGCAGTCAAGGGGTTATACTGCAGA # Right flank : GTGGTTGTAACCGCTTGAAACGGGAGCTAGGGAAGGTCTGCAAAACCTCCCCACCTGACTGCCGGGATGGGACAATAGCGACATGAAGCAGATGAGTCTTCAGGTGCCGATGTATACGGGCTTTGAGCTGCGCACCAAGCGCACCCGCAAGCGTGAGTTTTTGGAGCAGATGGAGCGTGTGGTGCCCTGGAAAGAGCTGGTTGCGCTCATCGAGCCGTATGCGCCCAAGGCAGGCCCCAAGGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGAGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //