Array 1 124871-124545 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000038.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 124870 37 100.0 34 ..................................... TCCAGTTTCTGGAGTCCGTGTTCCGGACGTTCTC 124799 37 100.0 35 ..................................... TTCCTAAAAGTTCTTTTATGTCCGTATACATATAT 124727 37 100.0 35 ..................................... GTGTCGAGTGATTCGGGAACGAAGTTTTGAGCCAA 124655 37 100.0 34 ..................................... TTTTGGAGACGTATAATTATGCTGAGAGCATTCG 124584 37 75.7 0 ............A..TA.....A....AA.AA....T | AAA [124555] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 95.1 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : AACAATCTTTTGCAAATTACGTCCCTTTTTGTATATTACGTGAGTTCGGCTGAGTAAATATTTTCATAAAAGTATGAGTTCCTACAATTTTAGGAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACACCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTATGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : ATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGATAGGTCTTTGTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAGTTTCAAATGAAAGTATGAAATTTCCCACAAATCATTGAGATTCAATACTTTTTCGCCGCTATAAATTTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTGTTTTTCCTCCATTGGATTCCTATTATTTTTAATAGGAAGTGGCTTAGGCTCCCAAGAAACAAAATCCTGTTTTACTTCTTACCCAGAAGTGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 77792-77466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000040.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 77791 38 100.0 33 ...................................... GACTACGGACAAGACTATCAACAATATTCCGAA 77720 38 100.0 35 ...................................... GCTGGTCTTGGATTTAATGGCAACGTAGCCAATAG 77647 38 100.0 35 ...................................... TTTTGGATCTCTAATAATCTCAGTTTTTAATTCCT 77574 38 97.4 33 ................G..................... TCCGCGTAATCGCTTGATATATAACGTCGTAAC 77503 37 84.2 0 ...........................T.-.CA...AA | G [77476] ========== ====== ====== ====== ====================================== =================================== ================== 5 38 96.3 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAACT # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : ACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 26576-26969 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000027.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004923, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 26576 36 100.0 36 .................................... GCACCCAAAAGCCAAGAGGATAAACCATGAAAATTT 26648 36 100.0 35 .................................... TAAAATGGTTCGCTTCGCTTTCGCCTTGTCCGGCG 26719 36 100.0 36 .................................... CGCATAACAGGCAAACAAATAATAGAATATTCGGAC 26791 36 100.0 35 .................................... AATTTAGACGGGATAAGCGACGTAAGTATCGCTTT 26862 36 100.0 36 .................................... AGGCCGCCCTTGATAAACTCAGAATCGCACGGTTAG 26934 36 94.4 0 ............................C.A..... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 99.1 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCGAAGTGAAAATCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACTTTGAATCAAATCGTACTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 87217-86963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000013.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004925, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 87216 37 100.0 35 ..................................... CCTTTTACGATTCTACATTCTCCATCTAAACTTCC 87144 37 100.0 34 ..................................... CCCTCATTAATAGATTTTAACGTATCGTAATTTT 87073 37 100.0 37 ..................................... TTTATGAACTCAATCAAATCCGTGATTTTTCCGTAAA 86999 37 78.4 0 ..........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 94.6 36 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAAGGATCGATGCGATAGGAACTTTAGCAAAAAACTCTTTCAAACTAAACGTCTCACTGTTCGACAGGCTCATATACTACATTGGATTATACAGAACTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATATTCTAGCAACAAACATAATTCAAAATTAAAATTACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCCTTCTGAACTTGAAAAGAATGAGTTCAGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 9729-9478 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000014.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9728 37 100.0 34 ..................................... CACTCGTATGCTGCACAACCCCAATAGCTAGTTA 9657 37 100.0 33 ..................................... TCTTTAGCAATCTCGACACTTTCTTCCCATTTT 9587 37 100.0 35 ..................................... TAGGAATCATTTTGAGAGCGGGGACGCGACGGAAA 9515 36 81.1 0 .............G...G..G....C....A.-...G | TT [9487] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 95.3 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCTGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTTTAAAATTTTGTTCCTGAAACGGAGATTCTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGGATTGATTGCTTGGAACAATGATTTCTAAGTTTTGTGAGAGTTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACTCAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAAGTTTATAGATTTATAAATCGTATTTTCATTGTTAAATTCAGTGGTAGTTCCCACAAATTAAATCACATTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCGGCTTGCCACTGG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 17663-17844 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMW02000009.1 Leptospira kirschneri serovar Sokoine str. RM1 ctg7180000004888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 17663 37 97.3 34 ..........................T.......... TTCTTTGTTGTGGTGTGAAATTTTTTGTGTCAAT 17734 37 100.0 37 ..................................... TTGCCGAAGCGTTTCCGGAAGCGACCCCAGTCCCCAG 17808 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 GTTTCTTCCTTTGTTTAAGAAGGAAGCGGATTGAAAC # Left flank : CTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCTCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTATACGCTCTGATTCTATGATTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTGTTTCTCCCGATCCTTTGCGACCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTGGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : CTATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGTAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAACGTAGGTTGAAATTACCACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTATGCGAAATTAATAGACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACTAAAGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA //