Array 1 810403-809397 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCRV01000002.1 Escherichia coli strain OS_01_020_10 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 810402 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 810341 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 810280 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 810219 29 100.0 32 ............................. ACCGGTTTTAATTGATGCCCACGCTTCGTTTA 810158 29 100.0 32 ............................. AAAACACATTTTCAATAGATGGCATTCAGCTA 810097 29 100.0 33 ............................. CGATTATGAGTTTGCCGGAGAATAGTTACCTGC 810035 29 100.0 32 ............................. AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG 809974 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 809913 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 809852 29 100.0 32 ............................. TCATGAAGACTTCGATTATTTCTTGATACCTG 809791 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 809730 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 809669 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 809608 29 100.0 32 ............................. ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC 809547 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 809485 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 809424 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 836650-835949 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCRV01000002.1 Escherichia coli strain OS_01_020_10 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 836649 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 836588 29 96.6 32 .............T............... GCAAACCGGCATCAGATATAAGCTGTTCTCTT 836527 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 836466 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 836405 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 836344 29 100.0 32 ............................. GCAGACGTTACGGAACGGCGCGCGAGTATAGC 836283 29 100.0 32 ............................. AACAGGCCTGGGTCGACGAATTGCAAGAGGTC 836222 29 100.0 32 ............................. CAACTTGGCGACACAGACGTAACGGCGGTGTC 836161 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 836100 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 836039 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 835977 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //