Array 1 7449-6836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEOQ010000004.1 Staphylococcus sp. GDQ8D176P GDQ8D176P_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7448 36 100.0 36 .................................... TTAAAGTTTGTCATTTGTAATTCCTCCAAATTTTTA 7376 36 100.0 39 .................................... ATAATTCAACACGTAGTATATTTACAAATTTATCTAAGT 7301 36 100.0 38 .................................... TGCAGTATAAGACTTTATTATTTTATCTGGTACAACTT 7227 36 100.0 35 .................................... TGATCTTTATCCCAAGCATCACCATATAGTTTGTC 7156 36 100.0 34 .................................... ACTTTCTAAAATATTACATTGATAACGATTGTTT 7086 36 100.0 36 .................................... TTTTGATTAACTTCTTCTGTTGATTGATCTTCTTCA 7014 36 100.0 37 .................................... TTTTAACCGTAAATCATTCTAAAAACTACCCAAACTG 6941 36 100.0 34 .................................... ATGAACTCTTGCTCGTCTTTGCTTGGTTGTGTTG 6871 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 36 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAGCATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTTTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCTATCT # Right flank : ATTACTTGCTGCCTCATTGTATTCTTTTGTAATTTGTATTCGATAACCACTTTGTATAAGAGAGGATAATAATTTATAATTTCATAGTTAACTTGATTTTCAAATACAAAAAAACTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAATAAGTAATGAGATTAATAAGATATTGGAATTAATAATTAGGAGGGGTTAAGTAGTGGAGAACATTGATGGTAATAAAATAAATAGTATTTTAAATTGGGTTTATGAAAAAATTCTAAGTGGCTTACCAGGAGCTTATTCAGCCGAAGAATTAGCAAATAAATATTTAGAAAAATATAAAGATGAAGACAAAGTTATTAATAAATTAATAAAAGGACAGTTAAGTAAAACTGAAACTTTCGGTTTCATTACAGGCTTAGGCGGTATAGCTACACTACCAGTAGCACTCCCCGCTAATATAATTTCAGTTGTATATGTACAAATGTGAATGATTGCAGCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 16845-16163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEOQ010000004.1 Staphylococcus sp. GDQ8D176P GDQ8D176P_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 16844 36 100.0 36 .................................... AAAATCGAACACCGAACAGATGTTCGTGGCAATCCG 16772 36 100.0 36 .................................... ACCAGTTCTTACTTGCCATACGTGACGGAATTCGTG 16700 36 100.0 36 .................................... ACGTTTTCGATTGTTTTTAATAAATCTTGTCTACTC 16628 36 100.0 37 .................................... AAAAATACAAGTCCATATCTGTAAAGTCTCTCTTTCA 16555 36 100.0 36 .................................... TCAAACGGTGTTCCGTCTTTGCGAAAACATTCGACT 16483 36 100.0 35 .................................... TTCAAAATATCATTGATACATTCGATTATAATATC 16412 36 100.0 37 .................................... TAAATTTATTATCAAGCTTTGTAGCCTTCTTGCTTAC 16339 36 100.0 35 .................................... TAAACATATACCCACCTATTGAAAAGGTTAAAGCT 16268 36 100.0 35 .................................... TTAATTTAACTTTAATTAATTGGTCATAAACTTTA 16197 35 91.7 0 ...............................-..GT | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 99.2 36 GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Left flank : CATGCTTTTCTTCAAAAGAATCTGATACATATTTTAAAAAGTTTAAACCTAATGCTACATTTTTATACTCAGCAGTATCCATGCATTCTCTTAATTTATCGGCAGCTTGCCATAATTTTTCTTCAAAACCTATTGTTGTCATTAATAATACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTAGTCACTAATTTTATCCCTTATTTCAAATTAAAAAGGAAGAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATCAAATGTAGTATACTTTTAATATAAGGGAAATCATTATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTATCGTTAGTTGTCACATTTTTTGACAGCTAAAATAATAATTGACCCCTAATGGTTATGCTATTTATTGAAGCATCGG # Right flank : GTATTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTACTTCTCCCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //