Array 1 795-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPI01000086.1 Sphingomonas parapaucimobilis NBRC 15100 BBPI01000086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 794 29 96.6 32 ............................G TCGCCAATCTCGACATCACACGCGTAGCCGTT 733 29 96.6 32 ............................G GCTTCGCGCAGCCCGCGCTGTACCGCACCCAC 672 29 100.0 32 ............................. TCGACTACGCCAACGTCGACAGCCTTACCCTT 611 29 96.6 32 ............................G TAAACGACCGGGCGCGTCAGCTTGGCGAGGAT 550 29 100.0 32 ............................. ATGCCCGGCAGGAAGAACTCCATGTTGTCGGG 489 29 100.0 32 ............................. TGGCGGACGGCTGCTTGCGTCGGGAACAGCCG 428 29 100.0 32 ............................. TGTGATCGTCACGGTCCTGCGCGATGAGCTTA 367 29 100.0 32 ............................. CCGCCGACACCGACGCGTGCATGTCCTTTGCG 306 29 96.6 32 ..............T.............. TGACGTGCTGGTCGTGCACCGCCCCCGCACCA 245 29 100.0 32 ............................. TCGCTCGACGGTGTCCCGACGGCGGCGCTGAT 184 29 100.0 32 ............................. CGCAAGGAAACCTTGGCCGCAATCCGCGCCAT 123 29 96.6 32 .......G..................... AAGCCGCAATGATTTGGTTAAAAGACCTTGAA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GGTTCCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCACCCGCGGGGATGGTCCCTACCGCTGACTGACCACTCTGCGCCTTCAT # Right flank : CGCCGTGGGTGATCGTCGGCTCGGTGACGACCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1494-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPI01000085.1 Sphingomonas parapaucimobilis NBRC 15100 BBPI01000085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1493 29 100.0 32 ............................. GGCATGATAGCTTCCGGCCCTGCCTCGCCCAT 1432 29 100.0 32 ............................. CAAGCGCACACGCCTTCCCGAAGGCGTTCGGA 1371 29 100.0 32 ............................. TATCTCGGGCCGGGGCGCTTCAAGTCGGAGTC 1310 29 100.0 32 ............................. CCGCTCTTGTCCGATTCGTCAATCGGTATTGA 1249 29 100.0 32 ............................. CCCCGCCCTTCCTGCGCCAAACACAGGGAAAG 1188 29 100.0 32 ............................. TTCCGTCTCGGCGCCCGCCTCGACCAATACGA 1127 29 100.0 32 ............................. AAATCGGCCATTGCCAGGCCCGCACATAACCA 1066 29 100.0 32 ............................. AGTATGCGGATTTTACGGGTCGGACCCCGGAG 1005 29 100.0 32 ............................. CCACCGGCTGGACGCGCACCACCACCCGCGCC 944 29 100.0 32 ............................. GTTCCAAGAGTACCAGAAGTCCGGCAAGCGCA 883 29 100.0 32 ............................. CTGATCGAGCGCGTTGAGCGTCGCGGTGTCCA 822 29 96.6 32 ............................G TGTCGAGCGTCGAGATCGCGAGGCCCATGATG 761 29 100.0 32 ............................. TCGAAACCCGGATGGCACCGGGCGGCAAGGCA 700 29 100.0 32 ............................. GGCCATCCCTTACGCTCCCGCCCGTTGGCTTG 639 29 100.0 32 ............................. TGTGTTCAGCTTATCCGCGCCAGCTTTTGTAC 578 29 100.0 32 ............................. GCTGTCTGACCTGTATATGGCGATCCTGTGGC 517 29 96.6 32 ............................T CCAGCTGGCCGAGGCGGGCGATCGACAGGCCG 456 29 100.0 32 ............................. GCACATCAGCACGTCTGTGCGCTCCTGACGAC 395 29 100.0 32 ............................. ACCGTCAACCGGGTCAAGACGATCCGGCGGGC 334 29 96.6 32 ........A.................... TATCACGGCCAGACGGCGCGCGAAGCGATGGA 273 29 89.7 33 ...C................A...C.... GTGGCGTCGACGCGATCGCTCTTGCGGCGGGGA CC [263] 209 29 79.3 0 ..................CT..CCT..A. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.1 32 GGTTCCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCCCGTGGCGCAATTCCTGACGTGGCTCCAAGGC # Right flank : CGGTCGCGCGCCAGGAAAAACCCTCACATGCCTCGGCACCCAAATATCGACCGGCCAGCGGTTGGCGGCCGCCGCTCCTCACTGCTACCCAACCAGTATGCGCACCGATGGATATTCTCCCGCCGCCCTGGTCCATGCCTTTTACAAGGCTCGGCAGGACCGTGATCCGGAGGCACTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 118802-122246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPI01000076.1 Sphingomonas parapaucimobilis NBRC 15100 BBPI01000076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118802 29 100.0 32 ............................. ACGTTGCCGAAATGATGAACAGCATTTTTGGC 118863 29 100.0 32 ............................. ACGCCAGGCAACACGTCAGCCCGCAAGTTGGT 118924 29 100.0 32 ............................. AGATTCGCGCGTCCACCGCGATCGCCATGGCG 118985 29 100.0 32 ............................. GACCTGGGCTTGATCGTTAACGGCGCTGCCGA 119046 29 100.0 32 ............................. CGGTCGTCGGGGGCGATGCAAGAGGATGTCGA 119107 29 100.0 32 ............................. AGATCCCACGGCCCGCCCCAGCGGCGTGGCAG 119168 29 100.0 32 ............................. GTCCCTTTGGATGGTGGCGCAGCCCGCTCGCA 119229 29 100.0 32 ............................. CACTCCACCGATCTGGCAGCGCCACGCGGCGA 119290 29 100.0 32 ............................. CTAATAACACGCCGTTGTCAAGGCAATGCGGG 119351 29 100.0 32 ............................. CCCCCTGGCAAGGCGGGTTCGGGGCCACAGCC 119412 29 100.0 32 ............................. AACGGCGGTCAGAACGGCGGCGGTTGGGGTGG 119473 29 100.0 32 ............................. CGCCAGCTTGTCGAACGGATAGCCGCCCGAAC 119534 29 100.0 32 ............................. TATCTTGTGCGAATGCCGGAACCGCCAGCAAT 119595 29 96.6 32 ............................G CGCCAAGATGCGTGCGCGGGTCTTCGGCAAAT 119656 29 100.0 32 ............................. CCGTTGACGCTGAAGCCCCGCTTGAAGCTACC 119717 29 100.0 32 ............................. AGTGCCTGGGCGGGTGGGAGATGACCTATTAT 119778 29 100.0 32 ............................. GCCCAAGGCCGCACCGCTGGAGACTTCATCTC 119839 29 100.0 32 ............................. GTCCTTCAGGTCCAGCTTCAGCTCTTCAATCT 119900 29 100.0 32 ............................. TTGAAGGAATTCGGGACGGCGCTCGGGTCGCT 119961 29 100.0 32 ............................. CGTGGCACGCTGGCGGAGGTCATCCAGGACGT 120022 29 96.6 32 ............................G GTCCACCTCCGCCGCCAGGTCGGACGTGATCT 120083 29 100.0 32 ............................. TTCAGGCGGCCGGTAGCCTTCATGGCGCCCGC 120144 29 100.0 32 ............................. CATTCGCGGCGACGATCCGCGCTCTCCATGTG 120205 29 100.0 32 ............................. GTCGGGAAGCCCTCTATCTGGAGCGCTTCGTA 120266 29 100.0 32 ............................. TGATCCGGCTCGGTGATGCCCCAGACCATGAC 120327 29 100.0 32 ............................. TCATGCGCGAGAAATTCGCGCAGGCCGCGTTC 120388 29 100.0 32 ............................. CGCTGCTGATCCGGCCACCGATATTCGGTGGA 120449 29 100.0 32 ............................. TTCGCCGGAAATGCCCATCGCGGACGTGAGAC 120510 29 100.0 32 ............................. GCTGACGAACGAACAGCGTTCGCTGGGCAATT 120571 29 100.0 32 ............................. AGCGCCGCCGATGATGATGGTGGCATTTAGCT 120632 29 100.0 32 ............................. AGCCGCGCGAACCTGCTGAACGAGGCGGGTAT 120693 29 96.6 32 .......T..................... GTCGGCGCGCTCAAGGGCGCGGAACTTTTTCG 120754 29 100.0 32 ............................. CATGCCGCCGCCTCGCCCGCGACGCCGTGCAG 120815 29 100.0 32 ............................. CGCTTCCACGATCCAACGCTCCTTTCGATCCC 120876 29 100.0 32 ............................. AGCATCATCCGGCACCGGCTCCCTGATCTCGT 120937 29 100.0 32 ............................. CTTTTCGCCGCGTCGATCAAGCCGACGCTGAC 120998 29 100.0 32 ............................. GAAATCGACCGAGACGCGGCGGCGACCTTGCG 121059 29 100.0 32 ............................. ACGCCGACTTCGCGCAGCACAAAACCACCAGT 121120 29 96.6 32 ............................T TCGATAGGCCCCGGCGGGCGGGTGCCGTCGAA 121181 29 100.0 32 ............................. AGCGCCCCCTGCAGGCGGGGGAGGTGACGGTG 121242 29 100.0 32 ............................. GATGCGTGCGAAACCAAGCCCAAAGCAACACA 121303 29 100.0 32 ............................. CGCCGTCATTCCTTAATTTGGTCCGGGCGGCG 121364 29 100.0 32 ............................. CAAACATGCGTGCTATTCTTCTTGCTTCGTGC 121425 29 100.0 32 ............................. TTCACCCTGCGCGAGGCGCTGGAGTCGTTCAA 121486 29 100.0 32 ............................. CAGCTGACCGTCACGATCCCGACGCCCGGCGC 121547 29 100.0 32 ............................. TTGTCATGACCCCCGTGCCGATAGATCAGGTC 121608 29 100.0 32 ............................. ATATCAGGAGCTGAGCCAGTCGGGCCTCGGCA 121669 29 100.0 32 ............................. AAATCGAGCAGGCCCTCCTTGGCGAGCAGGGG 121730 29 100.0 32 ............................. CGCCTTGGTGATGGCTTCTTTGTTGAACTTGC 121791 29 100.0 32 ............................. GATGCCGGCAGGCCCGGCTTGTTCGGATGCTC 121852 29 100.0 32 ............................. CGCTTGATCTTGTGGACGTCGGGCTTATAGAC 121913 29 100.0 32 ............................. GGGTGGATCGTGTACTTCGACGCCGCCCGCCA 121974 29 100.0 32 ............................. TGGCCTACTGGGTCGGCTACTGGGACCGCGCC 122035 29 100.0 32 ............................. GCGCTGACGCCGGGCGTCCTGGCGGCGGGCGA 122096 29 100.0 32 ............................. TCGGTCGGAAGCTGGAGCGCGGCGCATGACCC 122157 29 100.0 32 ............................. GCCCGTGGCTGACATACCATTCGGATATTGGG 122218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 57 29 99.8 32 GGTTCCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCAGCGTGATCCCCGGCATGATCGACCGGATCAAGACGCTCTTGATGCCCGGTGGCGGAGAGGATGCAGGCGTGGCACCGGGTGGCGGCACGCCGTCGCCGGTGGAGGCCTGATGCCGCTGACCATGGTCATCACCCGCGACGTCGAGGATCGCTATCGCGGCTTCCTGGGTTCCGCGATGCTGGAACTGGCCCCCGGCGTCTATGCCCAGCCACGCATGAGCGCGGGCGTGCGCACCCGTATATGGACCGTCGTCGAGGAATGGCACACCCGCCTGCGCCGCAGCAGCATCGTGATGTGCTGGGCCGAATCCGCCGCCGCCGGGGGCCTGGGGCTGCTGACCCTGGGCGAGCCGCCCAAGGACGTGGTGTCGCATGAAGGCGTCCTCCTGGTGCGCCGCGCTCTGTCCTCCCGCATCCCTGTCAAGCCGACGCCATAACCGTTCGCACGACAGGAGGTCTTTGACATTGTGAACGAAATCAGCGATCTGCCAGGCAGA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-1952 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPI01000077.1 Sphingomonas parapaucimobilis NBRC 15100 BBPI01000077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 ............................. GCCTCCAGTGCGGCGGCTTCGTCGGCGGCGGC 94 29 100.0 32 ............................. GAGCAGTGGATAAACCAGCCGCTGCGCTGGCG 155 29 96.6 32 .................A........... GCGCGCTCCAGACGGGTCGCATTGGGGGGCAG 216 29 96.6 32 ............................G CGGTTCCAGGAGCTGGGAGGCGGTGCGCCGGC 277 29 100.0 32 ............................. GGTCGCACCACCTTCTACTTCGACGGGAGCGC 338 29 100.0 32 ............................. GACGTGTCGGTGGGGCCGCACGGCCTTAGCGT 399 29 100.0 32 ............................. CTATGCCTGCTGCACGGCCACATGGACGGTGG 460 29 96.6 32 .................A........... ACCTTCGCGGGAAATTACGAGATCGCCACGCC 521 29 96.6 32 ............................G TGGGCCCGGTGGCGCTGGCTTCAGCATTCGAC 582 29 100.0 32 ............................. GAGCAGACTCTCGCTTTTGGGGCTGACTGCAT 643 29 100.0 32 ............................. TGGAAAATCCAGTCGTCCTCCGTCATCTGCTC 704 29 100.0 32 ............................. CATTGATGCTCACCGCCCGACCGCGTCAGCGA 765 29 100.0 32 ............................. GTCATCGACGAAGGCGTGTCCGGACGGCAGCA 826 29 100.0 32 ............................. GCGTCGTAAAACGCGATGCGGAAGTCGAGCGC 887 29 100.0 32 ............................. CGATGGGGACAGCGTCAGGCGTCGAAGCTCGT 948 29 96.6 32 ............................T GAAGGGAAGCGTAGTTAATGATACCCGCAACG 1009 29 100.0 32 ............................. GCCAGCCCCGAAGCGCGCGCCGAGCTGCACGC 1070 29 100.0 32 ............................. CCCCGGGACTATCCCCACGGAATGGGGGATTG 1131 29 100.0 32 ............................. TTCACTATCGTTCAGGCCCGTCTCGAGCAGGT 1192 29 100.0 32 ............................. ATGATGTCCGATGCTGATCGCCATTGGCGCTA 1253 29 100.0 32 ............................. TCCGCAAGCGAAAAATGGTCGAGCGGTCGATA 1314 29 100.0 32 ............................. TTAGTCATGTTGTTATCTAGGAAGCGTAGAAC 1375 29 100.0 32 ............................. TGGACGAGGTGGTGGAGATCAATCCGCCCGAG 1436 29 100.0 32 ............................. GTCGCATACCATGCCGTGATCAGCACGGCCGT 1497 29 100.0 32 ............................. CACGGGGGAGCGCCCGACAACGCGTTGAGCAT 1558 29 100.0 32 ............................. GCGCGTTAGCCCCGATAGAAAAGATTGGGACA 1619 29 100.0 32 ............................. CTGCGTGATGGAAGTTCGTGAGGGGGGCAATG 1680 29 100.0 32 ............................. GTTGAACCGCCGCGTCGATCCCTCCCGGCTGG 1741 29 100.0 32 ............................. CGCTGGCGGCTGGTCGAGCCGTTCCCCGTGTT 1802 29 96.6 32 ............................G CTTCTGCCGGAGGGCATAGCCCATGAGGGGCC 1863 29 100.0 32 ............................. CGCCAGGCCGGCAGCGGCGGCCAGCTTCTGAG 1924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.4 32 GGTTCCCCCGCACCCGCGGGGATGGTCCC # Left flank : AAGTATCGCGAGACCTACGCCACCGATTCGTCG # Right flank : TGACTATGCTGTGGCATTCGTTGATCGCACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //