Array 1 733114-731273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOZN01000010.1 Listeria monocytogenes strain FSL R8-6607 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 733113 29 100.0 36 ............................. CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC 733048 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 732982 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 732918 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 732852 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 732787 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 732722 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 732658 29 100.0 35 ............................. TTGATAACATCTTTTACTGAAAGACCTGCCTTTAA 732594 29 100.0 34 ............................. TTGGATGCAAAAACTTTAATAGCCTCTGCATCAA 732531 29 100.0 35 ............................. TTATCTAACCAACCCCGCAAAACAGTATCAACAGT 732467 29 100.0 37 ............................. TTGGTTTATCAAGATGAATGCAACACACTTGCGCCAT 732401 29 100.0 36 ............................. AAGAAACGCAGGAAGAAGCTCCACGCCGCAAGCGTC 732336 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 732271 29 100.0 35 ............................. ATTTTATTACGGCTGGTGAGTTGTCCGCCGCACTA 732207 29 100.0 34 ............................. GTCGATACAATCAACAAAGAAGCGCTAGATATGA 732144 29 100.0 35 ............................. ATGAGTGCATCATAACGTTTTGCTACATAAGAAAT 732080 29 100.0 36 ............................. AAAAGTTCAAGAATTTGAACCATCCATTTAGCCCCC 732015 29 100.0 33 ............................. ATAGACCGTTTTTTCAAAGCCATTTATCAACTG 731953 29 100.0 36 ............................. ACTTTCTGTCAACGTGACAGGCATCGGAGATTTAAT 731888 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 731825 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 731761 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 731695 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGGCAGGTAATTTTT 731629 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 731563 29 100.0 38 ............................. GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC 731496 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 731433 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 731367 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 731302 29 93.1 0 .......................C....C | A [731277] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGT # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //