Array 1 585349-586695 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018933.1 Zymobacter palmae strain IAM14233 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 585349 28 100.0 32 ............................ AAGTGGGTGAGCTGTGCTGTCGTGCCCATGAA 585409 28 100.0 32 ............................ GGCAAATTCTAAGCCAGCAGAGCACTTAGAAT 585469 28 100.0 32 ............................ GACACACTGTCGGAAGGACTAAGGCGACTGGC 585529 28 100.0 32 ............................ ATGCCGCCACCGCGCCATTCTTCGGTTTTACG 585589 28 100.0 32 ............................ ATTAGTGACGCGACCGCTTCCTCGACCAGAAT 585649 28 100.0 32 ............................ AAAATGGCTTCCGTGAGCAAATCGTGACCAAG 585709 28 100.0 32 ............................ ATCGGGATGCCCGCGTTGCGCTTTTGGAATAT 585769 28 100.0 32 ............................ AACACTGAGGGGAACCGTCATGCAAACCGCCG 585829 28 100.0 32 ............................ GTTAAGCAGGCCGCCAATGTACAGCGCTTGGT 585889 28 100.0 32 ............................ ATCTTCCTTGTTTAAATGCAAGTAATCTCATG 585949 28 100.0 32 ............................ ATCGCAAAGCCTGCTGGCTCTGGTTTTTTGTC 586009 28 100.0 32 ............................ TGCTTGCTCTCTACCTTCACCTTGCCGGAACG 586069 28 100.0 32 ............................ AGCCTCGAAGGCTGTACGGATAGCCTCCCAGT 586129 28 100.0 32 ............................ TTCTTATTAGCCGTAATAGTTCGTGGACGTTG 586189 28 100.0 32 ............................ ATTCAGCACCAGAGTCTTTGATGCGCTCAATT 586249 28 100.0 32 ............................ TGAAACGGCTCTTGCTCCGGCGAGGATTGCTC 586309 28 100.0 32 ............................ TCTCGCAAGTCATGAAGATTCATGCAGTCATG 586369 28 100.0 32 ............................ AATACCCGCCAGCATAGTCATTATCGACATAT 586429 28 100.0 32 ............................ ATCGGGCTGTCCATTTCCAAAGTGCCGTCAGC 586489 28 96.4 32 ..................T......... AAGTGGTCGTCGAAGGCTCCCGAGGACATCGT 586549 28 100.0 32 ............................ ATGCCGGATATCGTCGCGCAGCGCGATAGAGA 586609 28 96.4 32 .............T.............. TGCAAACAAGTCTGCAGGAATCCTACAAACTA 586669 27 85.7 0 ..G..........T......-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGAGAAGACCCAAGGCAGCAAAGAGGTCTATACCCTCAAGCCGAAAAGCACCGACTCACTGTTCGACCGCTTGCAGATGACTTTCGACAGCAGCCGACTGTCCTCGCTCGACATGTACGATGCCTCTGGACAGCATACCCAAGTGGCTTTCAGCAACGTACAGCCGAATGCCCAGATCAGTGATAGCACTTTCCACTTCCAGATTCCCAAAGGGGCGGAAGTGATTCGGGAATAACTATCCCCGAACTGCCTCATAAAGAAATGCCCTCGCAATGAACTGCACCCCCAACGTTGGATAAAGCAAGTCCAACCTTCGGGGTGTTTTTTTTATGAGCACGGCATGACGACTTTAGCAAATGCGCTGGTGAACCCTTTTTTTGAGAGCAATGCTAACGCGTTGTTTTTACAGAAGCCGAAGACACCGCTCCGAAAAAGGGGTGAATGACTCGATACTAGTCCTTCCCCTTTCGTGACAATGTATTAGGATAAAATGCGTCTA # Right flank : AATAAGGGGATTGCGCTCTGCCTGATGCGTTGTTGAGTGGTTTTCCTCTCATGCACTGGTTCATAGGGCGATGTTTAGGTATAACCGTTGGCTTCCTGCCTTTCTTATGAAATACCGCCATGACCCGCGCCGAGCGTCTTCTTGTTCTTATCCAGAAACTGCGTTGCTACCGTTATCCGGTAACGGCGGCGGTACTAGCCGAATCTCTTGGTGTAAGTAAGCGTACGCTATACCGTGATATCGCTCAGTTGCAGCATCAGGGGGCGCGCATAGAGGGTTCTGCAGGCGTTGGTTATATGCTACGCGAGGGCTTTATTCTGCCGCCGTTGATGTTTTCATCGGATGAAATCGAGGCGCTGGTGCTGGGGTTGCAGTGGGTCGCGCAGAACGCTGATGAGATGCTCGGCCAGGCGGCTGTAGATGTGCAGGCCAAGGTGCGGGCTGTGCTGCCGGAGCGAATGGCGGAGGTGCTGGATCTCCCTGCGCTGAAATTGGGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1057636-1055987 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018933.1 Zymobacter palmae strain IAM14233 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1057635 28 100.0 32 ............................ TTGCCCGAGGCTTTACTCATCGACATGACCGA 1057575 28 100.0 32 ............................ TCTGAACCCTTACCACCTCCCACCGTGTACTT 1057515 28 100.0 32 ............................ ACTACTTCGACACCCGATCGCTTCGATTCGCT 1057455 28 100.0 32 ............................ CTCATTGCTGTGCTGTCGCAGCAGCAGTTCGC 1057395 28 100.0 32 ............................ ACAGTGAGCTGTGGCGGGCTGATGGAGGCCGC 1057335 28 100.0 32 ............................ GCCGGATGAGCTGATGGATGTTCAGGCGGTCC 1057275 28 100.0 32 ............................ TGAACGCCGCTGGCTGTGGGGGTGTCGCGTTT 1057215 28 100.0 32 ............................ GCGAAACTCTACGCGGAGATATCCTAGAGCTA 1057155 28 100.0 32 ............................ ATAGATGCTCTCTGTAGTGTCCCATCCTCATT 1057095 28 100.0 32 ............................ TCTACCTGAAGGTATCTGACAACGGCAAGCAA 1057035 28 100.0 32 ............................ GGGGACGAAGCAGTGGAGGTCACCTCTGTAAT 1056975 28 100.0 32 ............................ CTGGGGAGTGGACTCTGCGCGCTGGTACTTCT 1056915 28 100.0 33 ............................ GTGGTCACGTACACAGAACTGTCGGGGAATCAG 1056854 28 100.0 32 ............................ AGGCGCTCCGCCTCGGAGTAATCACCCCATTT 1056794 28 100.0 32 ............................ ACGGTGCCACATTGATACCATGAACAGCCTCT 1056734 28 100.0 32 ............................ AAGTCCGCTCAGTCTGCTGCTGAAGAGCGTAA 1056674 28 100.0 32 ............................ AAGAAGAGTGCCCCCCCGAAAGGCAAAGAAAC 1056614 28 100.0 32 ............................ ACGGGTATCCGGCTGAATCTATTTCAGCTTGC 1056554 28 100.0 32 ............................ CTGCTGGCTACGACTGGCGCGAATCGCTAGAG 1056494 28 100.0 32 ............................ GAAAGGCGGCGAAGACGAAAGCATCATCAGGA 1056434 28 100.0 32 ............................ AGCGGTTGCCTGCTGCGTTGCCCTCGATACGG 1056374 28 100.0 32 ............................ AGACCGCATAATCCCTACCGTCTGGTGATTTA 1056314 28 100.0 32 ............................ TAGACACTACGTTGACAAATGAATCAACACCG 1056254 28 100.0 32 ............................ AATATGGGCAGCACGCTACAGGGCAAGGTCAA 1056194 28 100.0 32 ............................ AGCGCAACGCCGTCAAGTTATCGATGAAATCC 1056134 28 100.0 32 ............................ ACAAAGGCTTGCGTGGCGGTCTTGGCTACCCA 1056074 28 100.0 32 ............................ TCTTGACGGAGAGCTTGCTTGCATCGTCTCTG 1056014 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGTTGGCAGAACTGATGACGACAGATTGGCTGAAAGGTATGCGGGATCATCTTGACGTAACGGAGTGTCAACCTATTCCTAGCCCACATGGCTACAAAAAGGTACAGCGCCGTCAGTTCAAAACAAATGCTGAACGTATACGTCGTCGGCATGCATCTCGTCATGGCGAAACGCTGGAGGAGGCAAGATCTCACATACCCGACAGTGTCATAAGGCCAGTTGAGCTACCGTTCGTGCAGTTGAACAGCCAAAGTACACACCAGAAATTTTGCCTGTTTATTTCACAAGGTGAGCTTATGACACACCCAGCCCAAGGGACTTTCAACACCTATGGGCTTAGTAGCACCGCGACCATCCCTTGGTTCTAACCCTTTTTTTCGCCCCTTTCTTAACTTATTGATTTATAAAGGGGCGAAATTTAGCTTTTAAAAAAGGGTCTAGAATAGAAAAAACCTATATTTCTTTTTATATTCATATGATTGAGGTGATAATCGCCTA # Right flank : TGCTTTGCAAATTCAAAACGAACGATGCCCGACACTCGGTCGGGCATCACTTACCTGTACTGCATAAAATTCATCAGTAACTATGCGGACTCACGCACCACATACGCCATCAGTTGGGACGTATCATCGGTAGCGCTTTGCATAATTTTCACGCCCTGCAATTCTGGCGCGAACCCCGGCAGCGTTTTCACTAGCTGCTCAAGTGCCATGAAATAGGTCCATGCAGCATCGCTCCATGCCTCACCTGGCACAACACACAAAATGCCCGGCGGATAAGGCAATGCCCCTTCTGCTGCCACGCGCCCGCGCACAGCTGCTAGTGGCAGCAGTTCGACATCACCACGCACCAACGCATGATTGGCCTGCTGCGGAAGCATAACCACCTCAGGCATCGATTCCGCACGGAACATTGCCTTCTGCAACGCCTTCATGTCATGCCGCACATTGATATCGTGCATTTCCTGACACAGCTGACGCAAGGTGTAACCGCAATAGCGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1066572-1067800 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018933.1 Zymobacter palmae strain IAM14233 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1066572 28 100.0 32 ............................ TGCCTGTCACTCCGTCCCTGGTGTGCTCGTAT 1066632 28 100.0 32 ............................ TTTAAGGGGAAACAGGTTTCAGGAGAAGCAAT 1066692 28 100.0 33 ............................ CTTGAAAAACCTAAAGAATTTTTTGATTATTAT 1066753 28 100.0 32 ............................ AAGCAGAGAACCAAAAATTTTCTGAGCCTCTT 1066813 28 100.0 32 ............................ TATATGCTCCGTTACTTTTCCTGATGGGCAGA 1066873 28 100.0 32 ............................ TGCAATCTTATTCCATCATTTGGACTCTTATT 1066933 28 100.0 32 ............................ GCAAAGGCAGCGATTAACGTTGTGGACCTGCG 1066993 28 100.0 32 ............................ TATTTGTCGCGCTTTCTAAGTTTCCTCTCATG 1067053 28 100.0 32 ............................ ATCACGAACTTAAATCCGGTCGTAATCTCGCT 1067113 28 100.0 32 ............................ GTGACGCGATCCGCGCAGGGAATGACGTCTTC 1067173 28 100.0 32 ............................ GTCTGTGCCCGCATGAACACGCCCCGTGCGTC 1067233 28 100.0 32 ............................ AATAGCGCTCCCCGTCGCCGGGGGTAAGCCCC 1067293 28 100.0 32 ............................ AAAACTGCGAATGATCCTTACGAATCGTCGGT 1067353 28 100.0 32 ............................ ATCAGTGATGCCGTAGTGATAAAGCTCTGCGC 1067413 28 100.0 32 ............................ AGCGAGTTCGCGACGTATTCAGCAACCCATGT 1067473 28 96.4 32 .........T.................. TAAGTGACAAATATAGTTTAGCCTCTGCCCTC 1067533 28 96.4 32 .........T.................. ACGTGACAAATCGTGGGCGCGCGGACTCATCG 1067593 28 100.0 32 ............................ AGCGGCCAAGCCCGTGGACAAGGACGACAGCC 1067653 28 100.0 32 ............................ TTACGAGACGCCGCTAGCGCACGCAACACAAC 1067713 28 100.0 32 ............................ AGTAAACGTGCGGCTATCGCTGACTGTGCCAT 1067773 28 92.9 0 ...T.......................C | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCGCCTCCACAAAATCCAACCATGACTCCCGCCTTAGCAAGCTCTCGCATAGCGGCCTGGGTAATGGATGTGCCCGTTCCCAGCAAGAGGCAGGTCGTATTTGCTATGGGAATATTCCAATAGCGAGATCGTTGTTGCTCATCGGTAACGTATTCTACCCGCCCGCCATTGACGAGAACTCGGCAGTGCTGCAGGTAGTACAGGTTGGCTCGTTTAGAGTGAAGGATTGTTTTTAGGTCGCTAGCGTGAATATCGTCCATCATCAACGTCCTAGGGGCAGAAAGATTGAAGTGTTAGTTTCTTTCAGAAATATAGAAATGCAAAGCTACTGATGCATGCAAAAAGCCCACTATCGTTTGAGATGACGTACCCTTTTTCTACCAGTGTCTATAACCCATTGTTTTTATGTGCATGCTGAGTAGGGAGAATAAAAAGGGTATTTTCTTTCAAACAGAACGCTTTTCTTTTAGAAATAAAGTATTAGGCTGATATAGCTCTA # Right flank : CGGCACTGATCCCGGTGGTTTGACCACCGGCTGATTCGCTACCGTTATAGGTAAGCCTGGACACACTAATTAGGACGTTCTCCACACAGCATTCCAATGAATTGATAACAAAAAAGCTTGCAATTTAAAGTCAGTTGCGTAGAATGCGCAGCGTTCACGGCGAGACGCCAAGCAGTTAGGCGCTTCACTTGGACTGTGTAGGACCGTAGCTCAGTTGGTTAGAGCGCCACGTTGACATCGTGGAGGTCAGCGGTTCGAATCCGCTCGGTCCTACCAATCTTAGACATATCATGCGTTGATATGTATCAAGAGCGTCGCAGCGGTTTTCGTCGTGTTATGGCGAACTGTCGATCTCTTTGCAGGACCGTAGCTCAGTTGGTTAGAGCGCCACGTTGACATCGTGGAGGTCAGCGGTTCGAATCCGCTCGGTCCTACCAGTTGCCAAACCCCGCTGAGACGATCGGCGGGGTTTTTTGCGTGCGCGTTGCCTAAGCAGTCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //