Array 1 25262-23647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYW010000053.1 Pectobacterium carotovorum strain NY1786A NODE_53_length_25377_cov_15.8695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25261 29 100.0 32 ............................. CACCCAGGTGTACCTGCGGGTGCTGGCACTGG 25200 29 100.0 32 ............................. AACATGCTTTTCAACAATGAAATGCGTCGTAT 25139 29 100.0 32 ............................. ATGAACAGGTGACGAGAAAAGGTAAAACTTCG 25078 29 100.0 32 ............................. CAGAGGATGTCCCGCATTATCGTAACAATGAA 25017 29 100.0 32 ............................. CGCCAGAAACTATCGATGACCGCGAAGTGCTC 24956 29 100.0 32 ............................. CATTCACTTTGGTCTCCCAGACATTCCAGGAG 24895 29 100.0 32 ............................. GCTTTCAGGTTAGGGCTGATGTTCATCTTCAC 24834 29 100.0 32 ............................. AGCGATCAAAAAAAGCAGCAGCCATCTCTGCT 24773 29 100.0 32 ............................. TGTTGCCATTGTGGAACGGCGCGATCGCCAGA 24712 29 100.0 32 ............................. TCCATCCCGAAAACATGGCGACATTCCGGGTT 24651 29 100.0 32 ............................. GTATACTTTGATTTTGATTTCACACCCGTTTA 24590 29 100.0 32 ............................. TTACCGATGAGTTCGACCTTATTTAATGATCC 24529 29 100.0 32 ............................. AAATCACGATCCAGTTCCAGCCACTCACCAAA 24468 29 100.0 32 ............................. AACGTCATTCATTCACTCTATCTCCTTTTATG 24407 29 100.0 32 ............................. AGTGCCCGAAATGCAAAGGGAATGGATACCGT 24346 29 100.0 32 ............................. GTTATGCGGATGGTGGAAGGGTTGGAGGCAGT 24285 29 100.0 32 ............................. CACAGGAACTTCAAGATGCAGGCGGCCACGAA 24224 29 100.0 32 ............................. CACCGCTGCCCCCTCATGATTTACATGATCGT 24163 29 100.0 32 ............................. TGCATGTAGCAGCCATTTACACGCTGAACTGT 24102 29 100.0 32 ............................. CGGGCTTCCCTTCTCCTGTTCAGCCTTCTCCC 24041 29 100.0 32 ............................. AGTTTGTCGGATACACATTATATTACGCAGTA 23980 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 23919 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 23858 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 23797 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 23736 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 23675 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATACCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAG # Right flank : GGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGTGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGATTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4602-2681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYW010000090.1 Pectobacterium carotovorum strain NY1786A NODE_90_length_4717_cov_17.1971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4601 29 100.0 32 ............................. TCATTAAGAGCGATAGATGTATGTTTACTAAT 4540 29 100.0 32 ............................. AGATGAAATGTAATTTTGGCGGTAATTGGTCT 4479 29 96.6 32 ............................A GGAGTTTGTTTGTTCTTCTAGCTTCTCTAGGT 4418 29 96.6 32 ............................T GACTAACGGTGATGGTGAGAAAGTGGGTTTTC 4357 29 100.0 32 ............................. CGCCCACTACCACCCAAATGCCGGCACTGTCA 4296 29 100.0 32 ............................. CTATGCTGGAGGCGGTAAACAAAGAGCATGAA 4235 29 100.0 32 ............................. CAGATCGACACGGTTAACGCGCGCGCAAAAGT 4174 29 100.0 32 ............................. AAATACAGGCCAGTGATAGGATAATCGACGTC 4113 29 96.6 32 A............................ GGAAGGGATTAAACCGTGGGCGGGCATTATCA 4052 29 100.0 32 ............................. CCACGTTTGCCCGGTTAAACCCTCCAGCTGTT 3991 29 100.0 32 ............................. CGATTAATGAATGGGCTAAATCCCCGCGAGTA 3930 29 100.0 32 ............................. TCATGGTTACCTCAAACACTGCTCACGGACGT 3869 29 100.0 32 ............................. GAAGTAACCGCAATCAACCTTAACGGTATTGA 3808 29 100.0 32 ............................. GCGGCTTTGTACATTCCTGACTGCTCACCGAA 3747 29 100.0 32 ............................. CGCCAGTCTTGAGATATTTTCGCCGTTTAGCG 3686 29 100.0 32 ............................. CGCGGGTGTAGCTTGGGGATTTCCCCGGAGAA 3625 29 100.0 32 ............................. CCGGCGAGTGCATCGAAATTGAGTCACTGGCC 3564 29 100.0 32 ............................. CACTTTTTCTTCCCCTACGTTTTTTTTCTAAA 3503 29 100.0 32 ............................. CGTTCTGCCTCTTTGCGCATCAGCTCGATAAC 3442 29 100.0 33 ............................. TAGTAGAGCGTGCAGAGTGACGCATCAATCAGC 3380 29 100.0 32 ............................. AATGAGCAGCGACGGGAAATTATCAACCGTTA 3319 29 100.0 32 ............................. CAGCCATTCCGAAACCAGCCTGTGATTGCGCC 3258 29 100.0 32 ............................. TCGGTTCTGTCTCACCTGAATCAGGTTACAGG 3197 29 100.0 32 ............................. CCTAAATCAACAACGGGCATTGCCTTTTGACA 3136 29 96.6 32 ................A............ CGGATACAGCACCGGCAGCAACGTAGCGCCCA 3075 29 100.0 32 ............................. CGCCCTTTTAAATTGGCTGGGTGTACCAATCA 3014 29 100.0 33 ............................. ATTGTTGTTGAATGCTTCGGTAGACATGCCCAG 2952 29 100.0 32 ............................. ACGGAGAAATCTACGATATAGGAATCTATTCA 2891 29 100.0 32 ............................. CGCGGTGATGTTGTTGAAATGGAAAAGCTAAA 2830 29 100.0 32 ............................. ATTGCACCTTTTTACAAAGGCACCACCTTGGC 2769 29 93.1 32 ............T.............T.. AACACCGCACCGATGGATCCGATTGGTGCATT 2708 28 75.9 0 ........T.T..T.....A..-.C...A | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAG # Right flank : TAATTAGTTGAAATTGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 211594-210366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYW010000001.1 Pectobacterium carotovorum strain NY1786A NODE_1_length_272769_cov_15.2809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211593 28 100.0 32 ............................ TTGCCAATTCTGATTGGTGGATGTGTGCGGTA 211533 28 100.0 32 ............................ CATCACATTCAGATAATTAACGCTCAATTAAC 211473 28 100.0 32 ............................ ATAAAGGCGATAATCCTTCCATGTTGATGCAA 211413 28 100.0 32 ............................ CTTGGTTCTCGCCATCTTGTGCCGCCTTTGGT 211353 28 100.0 32 ............................ TTAGCTGCATGCCCTTCAATGCGCTCCTGATT 211293 28 100.0 32 ............................ GACATCATATCTTCAAGGTCTTGCACTGAGTC 211233 28 100.0 32 ............................ AGGGCACCCACACCGCCCGATCAACGGATTTT 211173 28 100.0 32 ............................ TAGCGCGAGAACACGAACCCATTGCACCATGT 211113 28 100.0 32 ............................ ACCGTGCGGCCATCTGACCAGTAATTGCCGTC 211053 28 92.9 32 ...........C.....T.......... GATCAGGGGATGTGATTCATGTGTCAGGGCGA 210993 28 85.7 32 ........T..C.C...T.......... CGACCGCTGGGAAGCTGCTGACACACCCGAGC 210933 28 100.0 32 ............................ GCAGCAACTCCCTGTCGTCATTTACAAAATCT 210873 28 96.4 32 .................T.......... TTACCTGCCGACTGTCTTTTACGCCAGTCAGC 210813 28 92.9 32 ............G....T.......... CAGCGCAGAACCACCCAGGCTAACCCGCGTAT 210753 28 92.9 32 ............G....T.......... GTTCTGGAACCATTCAACAACCTGCACCAAAT 210693 28 89.3 33 ............G....T......A... TATGGGAAACATGACAGAATGCTATCTGTCACA 210632 28 100.0 32 ............................ AGCAGCAAACACGCATTGGCCGTACCTGGACC 210572 28 92.9 32 T..........C................ GGTAAATCACGCCCCTGTCGTCGCAAGCGCCA 210512 28 92.9 32 ...........C.C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 210452 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 210392 27 82.1 0 ............GC........-...TT | ========== ====== ====== ====== ============================ ================================= ================== 21 28 95.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACATTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAACTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTAGTTAGTGTAAAGCCTTAACG # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAGGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCAGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAAATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 220585-222112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYW010000001.1 Pectobacterium carotovorum strain NY1786A NODE_1_length_272769_cov_15.2809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 220585 28 100.0 32 ............................ ATCAACCCGACTTCATTTAGAGTGATTGTCGT 220645 28 100.0 32 ............................ CACGTATGAATTGGCTGGCGTTGAGTATTGTG 220705 28 100.0 32 ............................ TGTCGGCTCTGAAGCTGTTGTTGTTGCCATTG 220765 28 100.0 32 ............................ GTCGCGGCTGGCCCGGTGATTCTTTTAGTGAT 220825 28 100.0 32 ............................ GAATACGTCAGTAACACCCGGTGGAACGCCTT 220885 28 100.0 32 ............................ TTCTTCCGTACTCAACTTGTGCGTGACCTTGC 220945 28 100.0 32 ............................ TGATCGGCAAAGCCAAGTTCGACACACTCACT 221005 28 100.0 32 ............................ GGTAGCAACCGCTTAAGCGGTGACATCATGTC 221065 28 100.0 32 ............................ CAGTGGACGAAGCGCGGCCAATTGGCCGACTT 221125 28 100.0 32 ............................ GTTATTACCCGATTTCATTAACTAGTGAAGAT 221185 28 100.0 32 ............................ GAACTGCGCAGTCAATCCAAATGTGACGCCGT 221245 28 100.0 32 ............................ GCCCATCAGACCGATGCTCACCGTGCTGTCAT 221305 28 100.0 32 ............................ TCTGCATTTTCTGGGTTGCTGCCGTTATTCGT 221365 28 100.0 32 ............................ TGAATATATCCAGACACCAACGAACACGCCTT 221425 28 100.0 32 ............................ ATTATAAGGAATATCATCATGTTTACATTAGC 221485 28 100.0 32 ............................ AGTAACATCTTTAGCAGCGTAGAAGCGTGAAT 221545 28 100.0 32 ............................ GCTGATGGCCTGAACAACCATCAACTGCTGCG 221605 28 96.4 32 ...........G................ AGCAATAGCGACATGCGCGGTATCAGCGTTTC 221665 28 96.4 32 ...........G................ GGAGATCAGCACCGGCCACTCAATCACCAAAG 221725 28 96.4 32 ...........C................ CGCATCGCTGACGCCGATAATCTGCAACTGCA 221785 28 96.4 32 ...........C................ AGCCCACACATTTTGTTATTTCTCGTATCAGG 221845 28 96.4 32 ...........C................ GGAACGGATGCGGCTATTCCATTAACCGCATG 221905 28 92.9 32 .........A.C................ TGCGTAATACGCTGCGCTGGCAAGTTAACGCC 221965 28 96.4 32 ...........C................ CGTATGTCGCTGACAGAACGCGGCGTAGGCGT 222025 28 96.4 32 ...........G................ GTAATGCGACAGGTTTGCGTCCGAACCTGATG 222085 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCTGCGAATAAGTCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGGAAACTAACGAAAATCAGCCTATCACAAATATTCTGGGAAAATGGTGGCTGCGAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGTTAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTACAGGGAAATAGCGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGATGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGAACATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //