Array 1 92055-82703 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000017.1 Herpetosiphon geysericola strain DSM 7119 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 92054 37 100.0 37 ..................................... CGGTTGCTGCTGGCAGCGCCAAACTCGACACCGATCA 91980 37 100.0 38 ..................................... CCAATCGGCAACCATCTCGCGAGCGTACTGTTCAGGCA 91905 37 100.0 37 ..................................... CTACTATAACAGGGTCACTGCAATGATGGTAGCGTAC 91831 37 100.0 37 ..................................... CTGCCCATACTGTGGCAGCCGTGCGCTAGCCCAGGTC 91757 37 100.0 35 ..................................... CACGCGGTCGTGGCCGCAAGTCATGGGGTCAAACC 91685 37 100.0 37 ..................................... AAACATCGCTTGCAAGCGTTGTACCGCAAACCGTACC 91611 37 100.0 38 ..................................... AGCGAGAACTAGATTTATATGCGCTCAATAAAGGCGGT 91536 37 100.0 40 ..................................... TGAATCGACCGCGCACTATAATCACCATCATCGTGATTCG 91459 37 100.0 41 ..................................... TAATAAGATTGAACAGATTCATGGGCAAAAACGCAATATCG 91381 37 100.0 41 ..................................... AATAGTCAAATGTCTGCAAAAGAAGATATAGGTTCATATCC 91303 37 100.0 40 ..................................... AGTACCTTGCGAGCTTGGTTGATTTGGCTCAGGCTTAAGG 91226 37 100.0 39 ..................................... TGCCATCTCATGGACTAACGTGCTCAACACGTCCTCAAG 91150 37 100.0 41 ..................................... AGCGGTTGCGCCTGCGGCTGCTTCAATCGCATATTGCCATG 91072 37 100.0 42 ..................................... CAAGTAGGTTTTTGGCGCTCAGATGAGTGCGGCTGAACCGAC 90993 37 100.0 38 ..................................... GTTCAATATTACGAAGCCTTAGGCGACATGCACGACCT 90918 37 100.0 41 ..................................... AATCAAACAAGGTTTTGCGGCTGGCGTTCTCAATTGGGATA 90840 37 100.0 35 ..................................... AATCGCGTCAGCCTGTTCAGCGGTCACATACCGCC 90768 37 100.0 41 ..................................... GTATAGCTATCAGGATTCTTAGCATACCAGTAGATATTATC 90690 37 100.0 41 ..................................... CCCCGATTGACCTCCAGCACGCCGCAGCGTTGTTGGCAGAC 90612 37 100.0 37 ..................................... GGAGCAACACGTTTGTTCGTATCGCTCCATTATACCA 90538 37 100.0 39 ..................................... GTATCAAGGATAGATTGAGCGCCAAAGTATTCATATAAG 90462 37 100.0 41 ..................................... TTGTAGCTACAATCTCGTATACTTCCCCGCATAAGACGTAA 90384 37 100.0 38 ..................................... CTGATTTTGAGGCTGATGATCGCGGCTTTTTTCAATGG 90309 37 100.0 41 ..................................... GCTATTCCACGCCGCTGCGGCCTCGGCAACCGTCAAGTACG 90231 37 100.0 38 ..................................... CCCTTCTAGTTGAGAGAGGCTGGGGCGGAAGCCTCGGC 90156 37 100.0 37 ..................................... CTTTCTTTTCACTGTCGTTTGATGCCGATTTGCGTTT 90082 37 100.0 35 ..................................... GGAAGCCCTCAGGGGTTTTACTATACCTAGTGTAC 90010 37 100.0 38 ..................................... GGAATCAGAATAGGAGTAATTTTGGTTAAGAGTATATA 89935 37 100.0 42 ..................................... ACAGATTGGAGGAGAAAATGAAGCACCCCTACCTGGTTATCG 89856 37 100.0 41 ..................................... GAAACCACGTGTGCTGCGTGTGCGTTTGGGGCAGCCGGTAT 89778 37 100.0 38 ..................................... CCAACCATAAAACCATCTTGATGCTTGTACCACGTTTT 89703 37 100.0 38 ..................................... TTTGCCGTTATCATCACCGCGCTGCCTGGGCAACCAAT 89628 37 100.0 40 ..................................... ACCGAATCCAAGGTTGGGAGCCAAAGCCATTGCGTGAACG 89551 37 100.0 35 ..................................... GAACGTGATCAGGCTCTGGCCGAACGCGATGCTGC 89479 37 100.0 38 ..................................... CAAAATGCTGGAAGGCCAGCAGCTTGAGCAGCAATAAC 89404 37 100.0 37 ..................................... AAGATGGGGTAAGCATCGAACTATCGCCTAGTCAAGT 89330 37 100.0 37 ..................................... CAAGTTGGGTACGAGCAGCGGCTTCGCCTGACTCAAG 89256 37 100.0 40 ..................................... CGCTGGGCTTTGTTGGCGCTCTTGCCGCCGTCACATTGAA 89179 37 100.0 39 ..................................... GTTCGCACAATTTCGTCATAGCTCGTTTGCTTATTCTTG 89103 37 100.0 36 ..................................... TTATGAGAAATAGCTCGATAGAGCGTTAAGACTAGT 89030 37 100.0 40 ..................................... CCGAATGCCTGCGCAGCGTCCTCGCTCGGATACCACGTTG 88953 37 100.0 38 ..................................... CAAAATGGCTACCGAAGCTCCACTCACAGATGTGGTAG 88878 37 100.0 42 ..................................... TAACGATTCTTGAGTGAATAAATCAACGACAGCTCGCGATCA 88799 37 100.0 39 ..................................... AGGAATTAGGCGTAGCCGATATTGATAGCGTCAAAACGG 88723 37 100.0 38 ..................................... CTGCCAGCTCAGCGGCTTATCGCTGTACATCCACTGCA 88648 37 100.0 39 ..................................... GGATGGCGCATAATTTCAGGCATGCGCTCCACTTTTTGA 88572 37 100.0 39 ..................................... ATTCATTACCTTCACGAACAATACGATCAAGGATTTTTC 88496 37 100.0 37 ..................................... GCTTCTAATGCTAAATGACTAGCCCGAACTTTATTTT 88422 37 100.0 41 ..................................... ATGATATTAATGCTGCTTGCAACATCCTGAACCGTAGCAGC 88344 37 100.0 40 ..................................... AAACGTGCCACGCCGTATCATCAGCGGCAACCGTGCCAGC 88267 37 100.0 40 ..................................... CGCCAGTCACGCAATTGGTAATGCGAACGTCAAGCGCTTG 88190 37 100.0 38 ..................................... CGTGCGCTGAATTGGCCGATCTACCGCTGGACCTCATC 88115 37 100.0 39 ..................................... CTTCGGAGTGCATCAATTCGATGGTTTGTGCTATTGGTC 88039 37 100.0 37 ..................................... CGCTGTTGTTCGGCGGTTGGCAGCGATAGCATGTGAG 87965 37 100.0 36 ..................................... AGCGGCATTGCCATCCTTGGTGGCCGGAATGAACGT 87892 37 100.0 38 ..................................... GCTTGGTTGATGCATCATAGACCGCATGCTCAAGAAGA 87817 37 100.0 39 ..................................... CCACAGCCTTGCACGCGGCCACGAAACGCCGTAGCCTGC 87741 37 100.0 41 ..................................... GCAGCAGCTACCGCTTTGTAAACGTCGGGCTTATTCTTTGC 87663 37 100.0 35 ..................................... TCAACAAAGGTCGGCCCGTTCTTGACCCAGTGCAG 87591 37 100.0 39 ..................................... CATCTTCGAGAGTAAACCATAATTCGCAGCCTAGAAATC 87515 37 100.0 36 ..................................... CCAGGCCAAAACAGCAGCGTTGTTCCCCGATGTAAT 87442 37 100.0 40 ..................................... GTAAAACATCGCAAGCTGACGCAGAAAAGGCATTAGCTAC 87365 37 100.0 39 ..................................... AACTATAGCTATGGTTGCGAGGTCGGCCAAAATGCGTTC 87289 37 100.0 40 ..................................... CGACAACAACGCCAAACCAGTCCCGCTGAAAACGATGTGG 87212 37 100.0 41 ..................................... GGTCGTTTGGCGGTAACGAATGGCCTTCACCAAGATCAAAC 87134 37 100.0 40 ..................................... GCAGGAACATGATCTTCGGACGCGCCCACTCTATGATAAC 87057 37 100.0 37 ..................................... CCAATCAGCGCGATCAATGCTTTGTTCATAATTCACT 86983 37 100.0 38 ..................................... TTTTGAAGATCAAGCATCTTGATGTTCCTCCTGATTGG 86908 37 100.0 36 ..................................... AAATACACGCACGACCTTGAAAACTTTATTGCAGGC 86835 37 100.0 39 ..................................... TCGAAGTTCGGTAGCGATATGTGGCTCAACCTAGAGTCA 86759 37 100.0 38 ..................................... GTTTGGTGTCTTCTCAATTGATTACGGCGTAGAGGAAA 86684 37 100.0 37 ..................................... TTTTCAAAACGAGGTGATGCTAATGCCAAAACTGTAC 86610 37 100.0 37 ..................................... CGAAATGGCGACCCGCAAGGTGATCTGGTGGATGCAT 86536 37 100.0 39 ..................................... TATTGAGTGCATCGACGTGATTGAACATATGGCATTCAA 86460 37 100.0 37 ..................................... TTAATACTTAAGTTAGTCGAATTGCTCTGCTTGATTA 86386 37 100.0 39 ..................................... GGCACCGTACCAATCCAGTGCCCGCGCGCGGCTTTCTCC 86310 37 100.0 38 ..................................... TGAATGTGCTTTGGAACCGTTACACCACGAATAATGTC 86235 37 100.0 41 ..................................... TCAAGGAAAGGTGCGATTAAGTCAAGCCATGCCCCTTTTTG 86157 37 100.0 39 ..................................... CGTGGGAAGAGGCTCTCGTTCGGCTGAACGAAATTATTG 86081 37 100.0 39 ..................................... TTTCTTGATTGGGGATCAATGTGCTTGTCGGTTACTTCC 86005 37 100.0 40 ..................................... TCATTATGCTTATTGTTGGATTCTTTCGAACCCCTATCAG 85928 37 100.0 41 ..................................... AAGTCGCCGCCAGGCGTGCGCATTGCTTCAACACCTAGCCA 85850 37 100.0 39 ..................................... CTAATAATAAATCAATATCCGCGCTCGCGGGTTGATTAT 85774 37 100.0 40 ..................................... CCGTCAAGGTCAGTCGAAGCCTTGGCGGTTCGCTTTTTAG 85697 37 100.0 39 ..................................... CCAAGAAATTCGCTTGGTGGTAGCCGAGCGGATCAGTTT 85621 37 100.0 39 ..................................... TCATGCGCTATTACATGCAGTGTGGTCGTATGGAGTGGG 85545 37 100.0 40 ..................................... TCATGCCACAGGCGAAAGCCTGACCTCTGAGGACATAACC 85468 37 100.0 39 ..................................... TTTCATGACATATTGTTGCATCAGGTCTTTACGTTTATT 85392 37 100.0 36 ..................................... TGGTCAACGATGGCACGGGCCATCTGGCAGCGCTCG 85319 37 100.0 40 ..................................... CCGTGTTCTTTCATTGCGGCCGTCATTGCATCTTGCATAA 85242 37 100.0 37 ..................................... TATGTATCCTTGCATACAGAAACAGCCTTATGCTACC 85168 37 100.0 39 ..................................... GTTGGAAGTAGCGCATATGGCGAGCTGCGCTATGGTGAA 85092 37 100.0 39 ..................................... TCCAGATACCATTCACGGCCCAAGTGTTGCACCGTGCGA 85016 37 100.0 37 ..................................... GAACGATCTCTTGGCGGTTGCGTTTGGCCGTCTTACC 84942 37 100.0 40 ..................................... CATTGGCATTATTCAGCGCAATGTCTCGAATGAGAAAGAG 84865 37 100.0 40 ..................................... CACGGATGATGACGACGATTTCAGCGACGACCCCGACGAG 84788 37 100.0 41 ..................................... ATAAATCGCTACGAATGCTCTTGAGGTATTTGGCCCATTCG 84710 37 100.0 40 ..................................... GGCATCGTCTTGGGCGTTGCCCATATCCGCTTCACTATCG 84633 37 100.0 41 ..................................... TAAGCGCAAATTTGAGCCGATCACGCGGCTGGGATTTGTCT 84555 37 100.0 39 ..................................... GTAGCGCTGCTTTTCTATGGAGTAATCATGAATCAAACA 84479 37 100.0 36 ..................................... GGCGCGGGCGATTTGCGGCAGCAGGTAACAGTGCTC 84406 37 100.0 39 ..................................... AACCAAGGTGGACACCTCATGATCGACGCAGTAGCAGGC 84330 37 100.0 39 ..................................... AACTTCATGGTGCGGATGGAGCGCTACCAAAAGGCATAC 84254 37 100.0 37 ..................................... CTTTTTGCTTTTTGTGACTTTGGCCAGGGCCATCAGC 84180 37 100.0 38 ..................................... GCCTTGGCGACTTGCACTTTATTGGCAAGCAGATCGAG 84105 37 100.0 39 ..................................... CGCGCATTTGATCCTGCCATCCTGCCCCTGCTGGTTGCA 84029 37 100.0 37 ..................................... TCAAGGTGGGCCAACCAATCGAACAACGTATCTTTGT 83955 37 100.0 37 ..................................... ATAAAACCTTGTCGTATTGGATACGCAAGTATAAAGG 83881 37 97.3 40 ......................T.............. TATTTGCGCTGGCAGTGGAACGAGCCTGATTGCTGGCAAC 83804 37 97.3 39 ......................T.............. CCCATCGCGTCCTTGATTAGTGCGCTGTCGAAGGTTGCC 83728 37 97.3 38 ......................T.............. TAAATGACAACGACCCCCAAATCGATCCGCGTTGGTCA 83653 37 94.6 39 ............A.........T.............. AATTTCGTTCGCGGATAGCGCGTCGCGCACCGCTTGTGC 83577 37 100.0 40 ..................................... AAATCAAGAAACCGAACAAAACCGTACACCTAAAAAAAGG 83500 37 100.0 39 ..................................... CGTATGTTGATCACCGTGACCGTGATACCGACAACTACG 83424 37 97.3 41 ......................T.............. GTTTGCCAAGTCTTGAATATCAGTGAACATGATGTGTCTCC 83346 37 97.3 39 ...............C..................... AGCCGATATGTGATCTATCCACTACACCGACCTCGACTG 83270 37 97.3 38 ...............C..................... TTACGAGTACCGCCCTTACCTTGACGCTTAGCGCCTAG 83195 37 97.3 40 ............A........................ CTTGTTCATTGAGGGTTCCTTTCGGCTACAAAAGCAATTC 83118 37 100.0 39 ..................................... TCCAAGCCAACCATATCTTTGAGCAACTGGGCATTGTGC 83042 37 100.0 39 ..................................... CGTTGGGCCAGATACCAGCGCCACTATCGCAATGCTGAT 82966 37 100.0 37 ..................................... AATAGTCGTTACGGTCGAAGTAATTGAAGTCAGTAGC 82892 37 97.3 40 ......................T.............. GAATGCCAAGGCTTACCACGCGCGGCGACGTGCCGCTGGC 82815 37 97.3 38 ......................T.............. TCGCGAATTTCAAACGTAAGATCAACGTAGTTATAGCC 82740 37 91.9 0 ....C.................T.............T | G [82706] ========== ====== ====== ====== ===================================== ========================================== ================== 124 37 99.7 39 ATTCGAATAACCCAAATCCTCGAGAGGGGATTAAAAC # Left flank : CTGAGCAGAGTTTGGCGAGTGTTTCCAGTCGGCCCAGCACAGCCGCGATCAATCTATCGTTAGAAGAGCTGCTTAAATCGTTGATTGAGCTGAATATGACTGAACTTCAGGCAAGCTTGCGCCAAGAATTTGCTGCGGGCTATACGGTTGTTTCGATTCATCATAATCATGCGATGAGTGTGCTTGAAGGCCATGTGGCAATGTCGTTGATTACAACCATGACCGTTGCTGAACATATGCCAGAATGATGCTATAATACAATCAAACCTTCTCCTCTCTCTTCTCTCCCACAAGCGGCTCCGATTTGCGAGCCGTTTGTGGTTTTAGGACGGTATAGGGGCACAAATGTGTTTGAGAGCCGCGCGATCGCATTAGAATGGGCTAAAACGTGATTTTAGGGTCATTTTTATGGGCAAAAAGGGAGCTGAAATCAGTGTTTTGCAACGGACCGCGCAAAGCGCACGTTTTAGGGCCTTGCAAAGCCATGAAAATTGGGGTAT # Right flank : AGCCAAAACGAAACCCGCCAGCCCACGAAATAATCGTGAGCCAGCGGGTCGTAAGCTGAACGTGGCCTAGTTCGGCAGCGATCTGCACGTTGGAGCTAGGCCAATGAGCAGGATATGCCCATGAATTGTAGCACGAATGTTTGAATAATGTCTAGCTATCGAGCACATACATTCAGTCAACCGTGCTCCATGTGCCAAACAAGTTCACAAACGGGCTAGCGCCAAGAAATTAATCAAGATCTCATCCTTATTTGGCCTATTTGCTGGTATAGTTAAGTCAAACCTTCTCCTCTCTCTTCTCTCCCACAAGCGACCCCTAGCGGGTCGTTTGTGGTTTTAGGCCCACCAAGATTGACAGCATCGCTATCCTAAACAGATAGCATAGGTCGTGATAGGAACCACACATGGGCATCAAAAATTATCTCATCGATGGCGTTTCTTGCGCTGGGAAAACAACGGTCTGCACCGAGCTGCAACGCTGCGGCTATCATTCCATCCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCCAAATCCTCGAGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 57296-57625 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000030.1 Herpetosiphon geysericola strain DSM 7119 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 57296 37 100.0 36 ..................................... TCGACCAGTTCAAAGAGGCTAACCAAAGTCAACCTC 57369 37 100.0 38 ..................................... GATTGGATTCATGAAAATATAAAATTTCTTACCAACCC 57444 37 100.0 37 ..................................... AAGCCATCAGACTATCCTCCATAACACTATCAATGCG 57518 37 100.0 34 ..................................... TAACTGTTACAGTTGGAGTATTAGTTGGTACCAG 57589 37 91.9 0 .................................TC.T | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.4 36 CTTGGAATGGCCTTAATCCCCGCGAGAGGATTAAAAC # Left flank : TACCAATGACCGCAGGTTCATAGAGATTCTGAGCCACCAGCTCCATCCATTGCGCACATGCACTGAATGAAGCGTGCGTGCTACGGAAACCGCATGCGCGTTGCAGCTCCGTGTTGCGCGAGGGCCACTGATTTGGTATGCTATGGGCCTCGACGTTCTCGCCACGTAACGGCGAACGCGCGGTTCATGGGGTGAACTGCGCGTTTTTGTCTCATGGTGGCCAAGCGTAGCCGTCAGGCATATATGGTGTGTCGCACGCACGGGACATCGCTACGGGAGAAAGTGGCAGTGGTTGGTGTAGCGATGAATACGGTAAGCACGGTGAAGGCGGCATTATAAGGCGATTGACAGATTTGGTATAATGGACACAGATTATGAAACAACCACTCTTTGTTTGACATAATTATTACGTCTGTATCCATCATGTCTGGTGATGATCACGCAATGCCTCTGAATGCGGCTCGTCGAGCAGGCGCATTTGCAAACGTGGACACAGAGGA # Right flank : TTAACGAACCAGCGCCCATCACGACGCTGGTTTTTCTTTTGTCCTGTATCCCTCACGATGCTGGAAAGAATGCAAGGTTTCCTCACCCATCGATGGCCTAGCATGAGCGCTTCCCGAGGGCCGTGACGAAGAGATTTTTGCATTTCGTTTCGCCCATGCCAGAAATTGCGGTTGTGTGGCTCTGGATAGGATGAACCTAGAAGGAGATAATCATGCAAAAAGCAGAAGCCTTGGCCCATATTGATGCAATTATTGCCGACTTGTCGAATGGGGATCTCTTCGATGCGGTTGGTGAAGAAGGATACTTGTTGCTCCGCGAGGCCTTAGAAGTGGTGCAGCTAGCGTTACAGGGAAAGATATTCCCAACGGAGGCCAACCAGCGGCGGCTCATGGAGATTATTAATCAGCAATTGACCAACCCGCCGGATGCCTTCCCGAATTGATAGGCTGGCCCATGAGAAGCGGGATGCCGTGTTTTGGAGGATGGCCCTATGCGTTTG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAATGGCCTTAATCCCCGCGAGAGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 39283-39690 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000018.1 Herpetosiphon geysericola strain DSM 7119 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 39283 37 100.0 36 ..................................... TCTGTAACAACTAAATCACGGCCACTCGATTTATTA 39356 37 100.0 39 ..................................... GTCATTGCCACGCATTGATTAATTTCTGAATCCTTCAGC 39432 37 100.0 38 ..................................... TCGATCAACCCCGTGCTGGGGATCATCGCAGTTGCCTT 39507 37 100.0 37 ..................................... ATCAAGTGTCTGGCGGCTGGCGGTGGTGTTGGTGTTC 39581 37 100.0 36 ..................................... TTTGTGCCATTGCCGCCGGTGAATTCGCCGTCTCGG 39654 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTTCAACAAGCCATAATCCTTGCGAAGGGATTGAAAC # Left flank : TGCCAGAGGATGCTGATCGGGTGAAACACATCCAAACGTGGGATTTGCTGATTCAGGCGCTTTTACATCAGGAAGATTTCCCGCAGGCAACCGAGGCGGTAACAACCCTCGTGCAGCTCGTGGACACACACAAGGATGGCCTGTTTAAGCAGCCAGATGGGCCACGGTTGTGGATGGCGACGGCCTATCATCGCGCCTTGGTGGCTGAATTCGCCTTGGATTATCCGACGGCTGCGACGTGGTACGCAGAAGCGCAGCAGCGCGCACAAACGATTGCCCTTGCACCCGATCATCCGCTGGCCCGCTTGATTGCTGAAGGGATTGAGCGCAACGAGCAAGGATCTTGACGGTACTGGTATACTGGACACAAGAAACCAAACAATCTCGTATTGAATTGACATAATAGAGAAGGATGTTCGCGCGATGGATGGGTCTGGTCAGCAAGCGGTGGTGCAGCGCACACAGCGAGCGGCTCCCATCCAAAAAGTGGACACAGCGGA # Right flank : CTCTAAACAACCTCAAACTGTGACAATTTGGGCTAAAATGCATAACGCCCTCCATCAAAATCAGGTCTTTTTTATCTTCGATTCCACTATCTTGCACGATATTGGAATAACCCGATTAATCCGTGCATTGCTCTATCAAAAATCCTCCAAAACTCCCAACAAATCATTGACATTCACGCACAATCATCTACAATTCCACTATCTTGAATGATTCTGGAATAGGAGCCTATGATGCGACGAATTACCGCCGAAACCTATGATGCCTGCGCGACTGAATGGGAAAGCCATCTTCGTGATCGCTTTTCTCATTGCCGCTGGAACCTTGCCCGCTACGCCGATCTCGAGGCCAATCATCAGGTTTCCCAGGATACCGATGGCAATGACATTACCGTTGGATTCATCGTCGTTGGAGCCAATCCAAGGGGTGAGGAATACAGCCTGATGGTGGCCAATCACGATGCGGCGGCGGGGTTGCTTCCGCTGACCGCCGTGCTTGCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACAAGCCATAATCCTTGCGAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 125428-131189 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000004.1 Herpetosiphon geysericola strain DSM 7119 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 125428 36 100.0 36 .................................... TATCATTGGCAATTCAACGAAAGTGAGGTGCTGTAT 125500 36 100.0 37 .................................... TCTCGCTTTATTGATTCTTGGCAAACAACACAGAATA 125573 36 100.0 37 .................................... TATTCGCGCCACTGAATCGCTGTCATAAGCGCGTCTG 125646 36 100.0 36 .................................... TTTTTCTCCTAGTTAGCCCCGTCCCTGCCTGCGACG 125718 36 97.2 38 ..........................A......... TCCCCAACCCGCCGCCCCGCAGCCGACGACCATCCAGC 125792 36 100.0 36 .................................... TGATGGCATCGTGCGCAAGGTCAGCGAGGCGGCCAC 125864 36 97.2 36 ..........................A......... TCATACTCGTTCTGATTCCGTTGATGCTTTGCTGAA 125936 36 100.0 35 .................................... TACATACAGTAGCTCGCCAGTGCGATTTGCCAAAT 126007 36 94.4 38 ..........T...............A......... TGTATCATGTTCCCCTTGACTCATATGAATTGTTCCAA 126081 36 97.2 37 ..........................A......... TTTGATCAGCAAATCCTTCGTTGTTGGTATAAATGAT 126154 36 97.2 36 ..........................A......... TCGCCGCCGATGTTTATAGATTTCAATTTGTCCACA 126226 35 94.4 36 .........-................A......... TATCGCGCCGAAGATCAACGCCGCCTAGCCGAACTA 126297 36 94.4 38 ..........................A........T TTACCTGAAGATGAACCAACCGGATTTGTTTACATTTC 126371 36 97.2 36 ..........................A......... TTTGCCACGGTTGGGGGCAAGGTTGGGGCGATGCGC 126443 36 97.2 36 ..........................A......... TTACCTTCAGCCTGATTTGCACTATGAAACACAATT 126515 36 97.2 34 ..........................A......... TTTGCCCGCGCACGTCATCAAGCGGCTGATCGTC 126585 36 97.2 37 ..........................A......... TTGAATGGCTATGCTGATTCGCTGTTTCGCCCAACGT 126658 36 100.0 36 .................................... TGACCGATCCGCCCTATGGCACAACTAATCTTGCAT 126730 36 100.0 37 .................................... TCCTTTGAACCAATTCGACCGTTCCCATGGTTCTGCG 126803 36 100.0 38 .................................... TAACGAAGGCATTCAAGCCACGCTGCAATGCCGTGGTT 126877 36 97.2 39 ..........................A......... TGGCATTCGTTCGCCAGCCTACAAATTCGACCTTGAAGT 126952 36 97.2 39 ..........................A......... TACCCAGCACGCCACCACGCATTGATTTAGATCAAGCGC 127027 36 100.0 37 .................................... TTCCTTAGTGGATGAGCGCCGCTTCTTTGTTTAAAAC 127100 36 97.2 35 ..........................A......... TATCGCAACCCATCCGATCCGCTCGGAAGAAAAAA 127171 36 100.0 37 .................................... TCCTGGTATCCCGAGGTCAACCCGCTCGATGCGGTAG 127244 36 100.0 37 .................................... GCGGCGGATTGCGCTCGAACTGTGGTACACCGATCAG 127317 36 100.0 36 .................................... GTCAGTTGGCCCAACGGTCACACTCACCATGAGCGT 127389 36 100.0 35 .................................... GCTACACCATGATAGGCCTCTCATTGCACTCCTAA 127460 36 100.0 39 .................................... GCCGATGAATCAGAAATCAAGGGAAAAAATCGAAATAGA 127535 36 100.0 36 .................................... GAATGGCCGTCTATGCCGCGCTGGCAGTGCGATCAA 127607 36 100.0 37 .................................... GGCCACACTCGCGATCGCGGCAGATTCAGGAGTTATT 127680 36 100.0 34 .................................... GTTCAATCCACACCAGCGACCAGGCGATTATGGT 127750 36 100.0 37 .................................... GACAATGCGCAGGAATCGCTTATTTTTGGCGGTGACA 127823 36 100.0 36 .................................... GGATCGCGTTGCAGATCGGCGATGGCATCAGCCATG 127895 36 100.0 38 .................................... GCCATCCTCAAAACTTGCAGCAACGCCCCGCTTGCGAA 127969 36 100.0 37 .................................... GGGAATCGATTCAATCAAGAGATCGGCGAGTTCGTCG 128042 36 100.0 36 .................................... GAGAATTTGCCCCAACCCATCCCTTGGCCCAACAAT 128114 36 100.0 37 .................................... GCCAATCACTTTCCAGTACCAACCCCGCCCATCCAAC 128187 36 100.0 35 .................................... GATCATCATGCTGTCTATCGCACGTTGCGCCTAGA 128258 36 100.0 38 .................................... GCGCTATAGTCATAAGAGAAACGAAAAGCTAATTCGTT 128332 36 100.0 36 .................................... GCTACGGCCAACCAGCCCAAAAAGGCTAGTTGACAG 128404 36 97.2 36 ..........................A......... TTAGTAGGTTCTGACCGCTGCCTTGGCCCATCCGGC 128476 36 97.2 37 ..........................A......... TAACTGAGTCCACCGCAGCGAGTGGAATATTACAATC 128549 36 94.4 37 ...............A..........A......... TTTAGTAGCTTCTTTGAAGCGGGTGGCACACCACCGG 128622 36 94.4 34 ...............A..........A......... TTTGCACTAAGGCGTGCAACCGATGGCCTTGGGC 128692 36 97.2 37 ..........................A......... TTTACTGACCCGCCGTATGGTGTAACGAAAATGGCCT 128765 36 97.2 37 ...............A.................... GTTGAATATCAGCGAAGGCATTGGATACTTCGCAAAT 128838 36 100.0 37 .................................... GTTTTAAGTAACGGCGCTTCATCATGCGAATATTGAT 128911 36 100.0 36 .................................... GAACCAAGCTTTCCGAGAAGCTTCAGCGTGAAGTAC 128983 36 100.0 37 .................................... GGTTGATGAATGCGCCGATGTCGGTAGCGCTGCCGTA 129056 36 100.0 37 .................................... GAGTATCTTGCATGAGGTCATCACAAAAATCAAATTC 129129 36 100.0 37 .................................... GTTGGTCAATCTTCAGTCGTGTGTTGTTTACCAAGTT 129202 36 100.0 39 .................................... GCATTGATGCGATGCAAACCATTCACCGTGGCGTAACAG 129277 36 100.0 35 .................................... GGTTCGATTCATCGTATTGTTATCTTGAAAAGCAT 129348 36 100.0 36 .................................... GAGTTTGTTTTCATCCATCACAAAGCCCATGTCATA 129420 36 100.0 36 .................................... GCTTTACCTTATCATCGCCATGGCCAAAGCCGAGCA 129492 36 100.0 34 .................................... TTTGAAGAAATCGACTGGCCGTTTACCGAGGAAC 129562 36 97.2 37 ...............A.................... TATAACAGCCCCCACGGTCGGCCAAACCTTTGGGTGC 129635 36 100.0 38 .................................... TTGCTGCGTCATGGCGCGTGCGCATCACCCACCGGAAT 129709 36 97.2 36 ...............A.................... TCACCCGCATCGAGCGTGGCACCACGAAATACTGGT 129781 36 97.2 34 ...............A.................... TAACACGATGGGCTTGGCATGATCAAGTAGCTGA 129851 36 97.2 37 ...............A.................... TAGGTTCTGAAGCAACGAAAGTAGCAGACCTATTAGC 129924 36 100.0 37 .................................... TATCCAGTCGATGACAGCCCGACTGAATCAAATGAAC 129997 36 100.0 38 .................................... TGAAAAAGCAGGTCAGGTTGTACAGCCAATTAAAGATG 130071 36 100.0 37 .................................... TACGCAGGCGCAGGATTAGCAGGCTTAGTTTCAACAG 130144 36 100.0 37 .................................... TTGCGTGGCTTTGCAGAAACGCGCATCGCCATGGTCT 130217 36 100.0 37 .................................... TGACCGTCTTTTGGAGCTTCATCCTGAGGATATAACT 130290 36 100.0 37 .................................... TTGATCGATAGCCAATACACCACCGCTGATCCGATTT 130363 36 100.0 35 .................................... TGCATGCAAGGCTTCGCTAGCACTGGTGTAGCCAC 130434 36 100.0 37 .................................... TATAAATAACTCAGATCAACCGACAGACGACCTAGAA 130507 36 97.2 34 ...............A.................... TTGCGGGTGTTGTTTTTGAATTTTGGCGACCTGT 130577 36 100.0 36 .................................... TTGTTGGCATCAATGCCCATGGACTTGGCTAAGGCG 130649 36 97.2 35 ...............A.................... TATGCGATGAAGAATAGCGTTAATGCTGCTGTGTT 130720 36 100.0 38 .................................... TCCAAAACGACGAAAACAATCGCCATTTTGGCGATGAA 130794 36 94.4 34 ...............A..........A......... TCCACAATAAACCACGCGAAACCCGCCAAGCCAT 130864 36 94.4 36 ...............A..........A......... TTGACAAACTGGATCGCGCGATTGTTTCAATGATGT 130936 36 97.2 37 ..........................A......... TTTGATAAACTGATCTCGCCGCTGTCGTTGTAGGCCA 131009 36 94.4 36 ...............A..........A......... TCTGGTCGCGCCGGCTCGCGCAGCGGATAGCGACCT 131081 36 94.4 37 ...............A..........A......... TAACCGTAAATATTTTCTAGTTATTTTGATCAGCGGA 131154 36 94.4 0 ...............A..........A......... | ========== ====== ====== ====== ==================================== ======================================= ================== 80 36 98.5 37 GTTTCAGTATCCTCTCTGCGGATCGATTAATTGAAA # Left flank : TGATGGCTATAGCTCAACTGGTTGTGATGATACTGATGCGATTCCATAGGCCAATGCAGCTTTAACTAACGACATTTGTGTGTAAAGGAGTGCAATTCATGGAATTTGAAACCACCCAAACCGATGAAACACCCATGATCTTCGGCCTGACCTACCTTGAAGAAGAAGCTGCTGAAATCAACGATATTGTTGGCTGTTTGGCCCCAATTAATGGCTATTCGGGCACTGGCTGCGACGATAGCGACGTTCCTCCAGGCACCCAAATTCCCTAAACCTACAGAAAATTGATCGCTTCCAGCAAGCAAACGAGCCGTGGATTTGCCATGGCTCATTTGGTTTAATCAGCACTTATAGCGAGATTGGAGCGGTAAATCCTACCTAGCCCCAAGCTCAGCACAAGAAACGAGCGAATAAGTGGCAAAAAGCTCTCGTGCCACCTGCGGATGCTGTTTAAATCCTCTCTGCGGATCGATTATTGCGCTTGCTTCGCTTGGTCAATC # Right flank : ATAACTTGCAAGGTCGATGGCGACAACCAACGCGGCGTTGTTTCAGTATCCTCTATGCGGATCACGGCCTGCCAAATAAGATTACCAGACGCATCTTCATGAATTGTCTGCGAAGGATGCCAACGGGTCTCAAGAACCCGTTGGCGCACATGGCGTTGGAATCGAACGCTAATCGTTATCGGCTGCTCATCTTGAGAGAACCAAATTCCCCAAGCTCCCTCAAATAGTTGAATCGGATCGAATGTCGAATGAACATCAAAATGTTCATCTTCGATAACAGGAACAGAAATAATCCGTTCGATTTTACGCGCACGAAGCGATTGAGCTTGTTCAGAAAATCCCACCACATATGTTGAACCACCAAGTGCAATTGGTTCTATCATATAAGGATGAAATACTTCGTTGAAGGCTTGTATACCCTGTAATGGCTGATAACGCCAACTTATTTTTCGCCCTGATAACCAAGCCTCACCAATTTTTTCTAAGGCCCGTTGGGCCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTATCCTCTCTGCGGATCGATTAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 189675-193962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000004.1 Herpetosiphon geysericola strain DSM 7119 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 189675 37 100.0 39 ..................................... ATAGCTCATGCAGAGTATAGCAAAGTGGCGTACTCGAAA 189751 37 100.0 39 ..................................... GGTCATGCAGCGCGGCACACATCCCCGCTTCGTCAATGA 189827 37 100.0 38 ..................................... GTACTCGTTATAGTATGGTTTTGGTGGGGATAGAATGT 189902 37 100.0 41 ..................................... TAATTCATCAGCACCGACCTCGCGCAACTCGTCAATGGTGG 189980 37 100.0 34 ..................................... ATATTCTCAAGAATGATGCAGATCCTATTTGTCC 190051 37 100.0 38 ..................................... GCATCGGTAACAGCCTCTTTACCTGCTTTCTCAAATCC 190126 37 100.0 37 ..................................... CAAAGACTTATAACTGGACGGGTCATGCTGAATTTAA 190200 37 100.0 35 ..................................... CTAAGCCACCTACCTTAAAGCTCCACATGTCATGA 190272 37 100.0 40 ..................................... CAAACACAAATGCTTGGCTGGCCGTATAGCGTTTATGTTC 190349 37 100.0 37 ..................................... TCCAACACAGCCAACTTATACGATACGGTGCGCGTTC 190423 37 100.0 42 ..................................... CCAATTGCATTGTTCATACCCACGAAGATCCTGACAAGATGA 190502 37 100.0 40 ..................................... CCAATTTTCGCGAACGTTGAACTAAATCGGCCCAAATAGA 190579 37 100.0 40 ..................................... GGACAGCGAACCGCTGAATTGATCGAATATTTTCAAGTGT 190656 37 100.0 37 ..................................... AGTGCGTTGCGCGTGGCCATGCTGCCATTACTGCTAG 190730 37 100.0 37 ..................................... CGGTTGCTGATATGGCATGGACGCGGCGCGCGCTCAA 190804 37 100.0 37 ..................................... GCAGAAAAGCTAGGCTTAACCGTTGTGCAAGTTGATT 190878 37 100.0 36 ..................................... GTATTATATGGCTCGTACACCAATTCTTCATACATG 190951 37 100.0 40 ..................................... GGTTATTGGCGATAGAATCTTCGATATCTTTCAATGTAAA 191028 37 100.0 38 ..................................... TTACGGTATAATTATAGTCACCGCTTACGGAAAGTTGG 191103 37 100.0 36 ..................................... TTCAGGTCGCGGTGGGCGCGTTGGATATGGTTACAC 191176 37 100.0 38 ..................................... GCAATTACGCGACCGCTACGAACGCTATATCTATAGCG 191251 37 100.0 39 ..................................... ATACCAGCGTTTACGCGCACGGGCAAGCTGGCAACATTC 191327 37 100.0 41 ..................................... GTCAAGCGTAAATTTGGCTATTGCTTCCAAGTCGATGCTCG 191405 37 100.0 39 ..................................... CATCCGCCAGCTTGGGATGCAAGCTGGCACAGCCTTGGG 191481 37 100.0 39 ..................................... CATAGCCTTAAGTTTTGCGATTTGATCATCGGTAAAGAA 191557 37 100.0 42 ..................................... CAAATAAAACGTGTTGTTGATCGCCCTCTAGCCGTGTTTGGC 191636 37 100.0 40 ..................................... ATATTGCTGATTTTGCGACCAATTTACTCATTAAAATAAG 191713 37 100.0 45 ..................................... TCCCAGTTGACAGCGTGCAAATCTTCGTTGCGAGTCCCGCAATGC 191795 37 100.0 39 ..................................... TGCCAACAATGCAAATGGTAGGAAAGCCTAGAATATTAT 191871 37 100.0 38 ..................................... GGTGGATTGGTTGCTGCCTTCTCTGGTCCGGCACCTGG 191946 37 100.0 41 ..................................... TCACGAAAGCTGCACGCTGGGCCAACCGCACATACGGCGGG 192024 37 100.0 40 ..................................... ATTCCAATACCAATGCTGGAGCCAAGCCATAAGCGAATCC 192101 37 100.0 38 ..................................... ACATACGCGATTCATAGATGATCTGGCCGCCAAGTTTG 192176 37 100.0 39 ..................................... CGGATGCGTTTGGATTCAGCAAATCGCGCTTCAAATCAG 192252 37 100.0 42 ..................................... CGAATATGAATCAACCGCCGAGTTACCAGGCTGGGCTGAAAA 192331 37 100.0 38 ..................................... AGACAAACCTGTTATTGGCCCACGAGCGGCTGCTCGCC 192406 37 100.0 40 ..................................... CCGCTCGGTATCGAGCGCTGGGCGTAGGAATGGCCGTGGT 192483 37 100.0 39 ..................................... AATTTCTCTAATGACCGACTCAACTCCATAGATCGCAGC 192559 37 100.0 40 ..................................... TAACTCCGAGGAGGTCATGGTCTTTTCGACGGCTGGTTTG 192636 37 100.0 38 ..................................... CCAACTGCAACCGGAACGAACGAGCTTCTGCCAATTGT 192711 37 100.0 38 ..................................... GCCGCAATATCGATGTATTCTGATTTACAGCGTTCAAC 192786 37 100.0 39 ..................................... TTCTGTGCTTGCTGAATCATATTGTACCTCAAGATTACT 192862 37 100.0 41 ..................................... AACTCCTATGCTATAATCGCAGTAACGAATATCGTTCCAAG 192940 37 100.0 41 ..................................... AGATATTCAATATCATGAATCCATGATTGAAATTCAGGCAT 193018 37 100.0 40 ..................................... TTTGATTCAGGTCGCTCATTTCATTTATATGTCAATACCT 193095 37 100.0 42 ..................................... CTGCGTAGCTTCAGTTCGTAATACACAGCTCGCCGCACCTTC 193174 37 100.0 38 ..................................... CAATCGCGTGTTCTGGATACCGCACACGTTGATTATAA 193249 37 100.0 37 ..................................... TGACACAATGACTTGAATACCGCTGCTTGGCGATTGC 193323 37 100.0 37 ..................................... AATAACCGTTATGTTAACTTCGCTGTTTTGCCTGAGC 193397 37 100.0 36 ..................................... CAAACTGTCCGGTCACTTCCGTTTTGACGTAAATAA 193470 37 100.0 40 ..................................... GTATGAGCGGCGCATGAAGCTCAGCTATAGCGCGACCTTT 193547 37 100.0 38 ..................................... GCGCCTAAGGACATCAATGGAATCATGGCTTTCATGCC 193622 37 100.0 38 ..................................... CTTAAATTCAGGATAATTATAGAGCCAATGAAACGCAT 193697 37 100.0 39 ..................................... AGCTTGGCTTTTCTGCTTTTGCTTCAGGCTGTGATTGTG 193773 37 100.0 40 ..................................... TCCTAATGATCCTTTGATTGGCCCATAGGGTTGAAAGAGG 193850 37 100.0 39 ..................................... GTTGGTTCGTCAAACCCCTCGGTTAGCACGGCGCAGTTA 193926 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 57 37 100.0 39 ATTCGAATAACCAAAATCCTCGAGAGGGGATTAAAAC # Left flank : AACGCGCTAGGAGGATCGATGCTCTACTTGATTTCCTATGACATTGCGGTTGACAAGCGGCGCACCAGAATTGCCAAAATCCTTGAAGGTTTTGGCCAACGGGTGCAATATAGCGTTTTTGAATGCGATCTAACCGCCAAGCAATATAGCAAACTACGTGGTAAACTCCACAAAGTGTTGCGGCCTGCTGATGGCGATAATTTACGCACCTATCGCTTGTGTGGAGTTTGTGCGCCGCATACCGAAATTATTGGCAATGGGCCAGCGCTCGAAACTAGCGTCACGATTTACATTTTTTGAAATATGGCTCCAGAGTGACCTAAATTGTGCTTATCCACAATTTAATATTCATAAACTGCCGCGCGATCCGATTCTGAAGGCCAAAAAGCGAGTTATCCACATGCAAATTTGCTTAAAAACCCGCCCAAAAATGCCCAAAAAAATCGGACCGCGCAAACCGCGCGTTTTAGGGCCTTGCAAAGCCATGAAAATTGGGGTAT # Right flank : TTCCGTTCAGCATCACGCTGTCTCCATTTGAAATAGGTTCTGTCTGATAATTCCATGGTAGACTCTTCGGCAGGAGGTGTCTATGGCTCGCCATGAATTGACCGATGCCCAGTTTGCATTAATTGCCCCGCTCTTACCGACCAAAACCCGCCGTGGCCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCAAAATCCTCGAGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 148110-137839 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKP01000003.1 Herpetosiphon geysericola strain DSM 7119 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 148109 37 100.0 36 ..................................... CAGTCACCATGAAGGCAAGGTGCATACGGTATGAGT 148036 37 100.0 40 ..................................... ATAAAATTCGCGCACGGTAAATTCAATCATGGTACGTCGA 147959 37 100.0 38 ..................................... TTCATCGGCCTGCTTACGAAGTCGATAATGCTCTTTAA 147884 37 100.0 41 ..................................... GCAATTTGGTAAGCGTCTTGATGAAAAGCGGTTTTATTACG 147806 37 100.0 37 ..................................... CTAGGAGTGATATAATGGAGTTAATAGAGGTCGATTG 147732 37 100.0 40 ..................................... CCACAATCTCGCCCGTGCGGGCATTGAGACGCGTCGTTCG 147655 37 100.0 37 ..................................... GCTGAAACTGGCCCAACGAGCAACAGCTGCTAGAAAC 147581 37 100.0 39 ..................................... GCCGTGGTATACTCTACGAGACAGACCGCTATCCGCTGC 147505 37 100.0 40 ..................................... AACCAGTGTTGTGCTCGTTTGTCAATCCCATACTACCACG 147428 37 100.0 42 ..................................... CGTGACAGCATGATTGATTGCTATTTTGGGGCTGAGTTCTAT 147349 37 100.0 42 ..................................... CCACTTTTTTCTAGCCACTATTCGCCCTCGCTTAGTGTAAAT 147270 37 100.0 37 ..................................... CGCATCTAGTCGGCACGGCCTGAGCAGCCCTACCTGC 147196 37 100.0 39 ..................................... CCCAGAGACCTCGGCCTCGGTTTCAATAGCGCTCACAAT 147120 37 100.0 39 ..................................... GTTTGGCCCCTGAATCGCCCGCACAACCGAACAGATAAA 147044 37 100.0 42 ..................................... AGCTTTGGCCCCATGGCCTTGGTGTGCTGATGCTCAATCATT 146965 37 100.0 40 ..................................... CGTAATATTAACGCTACTTCCTGTTGCGATAGACTGGTTT 146888 37 100.0 39 ..................................... TTTTACAGATGTATTTCAACGAATAGGCGTTGATACAAA 146812 37 100.0 39 ..................................... TGGACTTTGGCGAACCAATATTCAAGCGTTTTTGTGCCA 146736 37 100.0 40 ..................................... ATTAACATCCAAATACTTAGCCATAGATTACCTCTAGTTC 146659 37 100.0 36 ..................................... ATTTGCAACAGTCGTGAGCCATTTTCGCGCACTGTC 146586 37 100.0 40 ..................................... TCAATGTGAATGCTACACGGCCTGCTGTCGCGTTTGATGC 146509 37 100.0 39 ..................................... AGCAGCCGATTCATTGATACCAAGCAACGCTGCATATTT 146433 37 100.0 40 ..................................... CAAGGGGTTATTTGGGTATATTGGCCCTGAGATTGAAAAA 146356 37 100.0 38 ..................................... ATAAAGCCCGCTGAATGCGTTGTTGCTCGGATTCGTAG 146281 37 100.0 41 ..................................... GGGAATTTAGACCCTGACCTTCATGCAGCCCTCGATCAACT 146203 37 100.0 38 ..................................... GCAACCCCGCCAAAAGATTCATTAATTCAAGATCATAG 146128 37 100.0 42 ..................................... CCCTCAATCCAGTTTGAATGGTGTTTGGCTACCAAGTCGTTG 146049 37 100.0 38 ..................................... GCAACCCCGCCAAAAGATTCATTAATTCAAGATCATAG 145974 37 100.0 39 ..................................... ATAACGGAGTAAAAAAAAACTCACCTCTTCTTTCACCCG 145898 37 100.0 41 ..................................... CGGCTTCCTCAACCCAACGCTTGACGACCACATAATTGCAT 145820 37 100.0 39 ..................................... AGGCGCGACCAGCGAAGGAAACACGACGCTTGTTTCATT 145744 37 100.0 39 ..................................... AAGGCCGCTATTGGGGATAATCGCCATCGTTTTCTCACG 145668 37 100.0 39 ..................................... ACAGCAAGCCATGATTTGAATACCGTATCAAACACATAC 145592 37 100.0 38 ..................................... CGGCTGTCTCAAATTCCCATTCGTCATCATCGCTAATT 145517 37 100.0 39 ..................................... CCCTTGACTTCTACCGTAACGGGTAGGCCACCCATAACG 145441 37 100.0 44 ..................................... GCCAAACGGCTCGACATAGCACTTGTGATGCGGGAATTGTTGAA 145360 37 100.0 36 ..................................... CACAAGCACTAGCACCGCCGATCTGTTGCGGGCATT 145287 37 100.0 34 ..................................... TGCCAACGGTGCGCCGCCGTCGAGACTTTGATAG 145216 37 100.0 38 ..................................... ACAATAAACATCTGATTATCAGCGACGGTTATATGTGG 145141 37 100.0 38 ..................................... CTCAACTCGTGCTTTTGCCTCTTCGCACACCTTTTTGT 145066 37 100.0 37 ..................................... AGCTTGTGCGCGAATGCCTGATACCGTAGTGCTATCT 144992 37 100.0 40 ..................................... AACGGTATGGCCCCAGCGAAGGGTTTGCCTTTGCGATTGA 144915 37 100.0 38 ..................................... ATAATTTGGTCGCGCTTGAGGTTGGCCGCTAATTGGCG 144840 37 100.0 39 ..................................... CTCGCTATAGCGCACGGCCTTGGGCTGGACACTATAGGC 144764 37 100.0 39 ..................................... CACCCGTACAAAGCGTGGCTATTGTTGGCATACATAGCT 144688 37 100.0 35 ..................................... CGCAACTTGACAGCTAGTCGACAACTTGACAACGG 144616 37 100.0 37 ..................................... CGGCTTGAGCAGTTGCTCGGCTATTCGCTCAATGAGA 144542 37 100.0 40 ..................................... ACCATTCGCGCCGCCACCAAACAGCAGGAACATTTTTTGT 144465 37 100.0 37 ..................................... TCTTCGCACACAAACCTACCGCGTAGGTCAGCAATCG 144391 37 100.0 38 ..................................... GAACATGCGCCATTCTTTCATCTGCGGCGACATGGTGC 144316 37 100.0 38 ..................................... ACCTGTATTTCTCCATCGGAGAAAATATCATAGCTTGG 144241 37 100.0 39 ..................................... TTAGTACCACCATGCCGCGCACCTGGCGCAATTGCATGA 144165 37 100.0 38 ..................................... AGGATATCGGCTTGCTCGTCATTGTTATTGTAAATCAG 144090 37 100.0 36 ..................................... CGGTGGTCACGCCGCCGCATGCCATCGTGAAGAAAT 144017 37 100.0 38 ..................................... TCACGCCATATTGCACAAAAATACTGACCTCATGATCC 143942 37 100.0 38 ..................................... AAGCACGACCATCAGCTCTTGGTCACGATGGCCAACGA 143867 37 100.0 39 ..................................... CGACTTGTATACCATATCAGCCCTTAGCACCTTCGTTTC 143791 37 100.0 37 ..................................... ATGTAACCAACGTAGTGATCGCAATAGCGATCAAACT 143717 37 100.0 40 ..................................... CGGTCGAAAAATCCGCCGATGCTTGAGTGCGAATAAGTTT 143640 37 100.0 39 ..................................... TGAACTGTTCGGATTGTTGTTTGATCCCCATGAGTGGAA 143564 37 100.0 38 ..................................... TTGCGTCCTCGGCTTGGGTCAGGCCATCTTCATAGCCC 143489 37 100.0 43 ..................................... CCATAACCTTGCAAATTGAAGATGAGCAAGGGCGAAAAACAAT 143409 37 100.0 39 ..................................... ATAAATTCGCGCAACCATTTCAACCCATGTACCTCATCG 143333 37 100.0 38 ..................................... CTGCTCAATTCGTGCTGGCATTGAAAGAACAGCAAGCA 143258 37 100.0 43 ..................................... TTTATCAATCGTGCTCAGTGGCCCCTCTTTTGGTGGTGAGAAA 143178 37 100.0 38 ..................................... TACGATATGGCTGTTGGGCTGTTGACCGTGGTGATGGT 143103 37 100.0 35 ..................................... CCACACGGCATTTATTGGCCTGCTCGACCAAACCT 143031 37 100.0 39 ..................................... CTGCCACTATGGAATTCTTGGAGGCAGTAAGCTCGATTG 142955 37 100.0 42 ..................................... AAATTCCTACGCCAAATGCGTTATCTTCGCCGCCAGTAGATT 142876 37 100.0 38 ..................................... CGATAGATTCATCATAGCTGCATGATAAAACTGTGTCT 142801 37 100.0 39 ..................................... CCATTTTCCTGTGCTTCTAATGCAGCGCTCAAAATAGCG 142725 37 100.0 40 ..................................... CAGCTGGTCAAACGGGCGGCATTAGCAGCAGTGTCTCTGG 142648 37 100.0 40 ..................................... TCACCATGACCGCTGTCCAGTCAACGTCGCCAGAGACTGA 142571 37 100.0 39 ..................................... GCATGACAGCGTTCATTCTCTCACAGCCTACTCAGTCAA 142495 37 100.0 35 ..................................... ATTGAAAGTTACAATCCATCTTCACGCTGTTGGAA 142423 37 100.0 37 ..................................... GATTCAGTGGTATACCACGGGTGTCGTGATTCTGTGT 142349 37 100.0 37 ..................................... CATAATAACTCCTAACGATTCTTGAGTGAATAAATCA 142275 37 100.0 41 ..................................... AATTTTGTTGTCCCCCTGTGGGCGGCAGGGATTATTGGTGG 142197 37 100.0 39 ..................................... ATGGAGAAACCCAATGACTGATCCGAACATTCTATATCA 142121 37 100.0 38 ..................................... GCACCAACACGGCGCGCAATTCGCTATGGTCTGTGGCG 142046 37 100.0 45 ..................................... GCCACGCCGCAGCGGGCTGATGACATCGGGTTGGTGACCGTCTAT 141964 37 100.0 37 ..................................... CGCAAACAACCGACACGATGTTGCAAAAGGTAGCAGG 141890 37 100.0 40 ..................................... GTTACGACTGCGTTTCCGCCTTGTGGCCCCAAATTGAACG 141813 37 100.0 39 ..................................... GAGCTTGACAGCTTGACGTTGGGGCTTGATTCTGATTTT 141737 37 100.0 37 ..................................... TATAAACGAGCACAGCTAACCCTTGCGGATTACGACG 141663 37 100.0 37 ..................................... AGAAATCACCGAGTCAACGGGAGCTTACTCGCACGGC 141589 37 100.0 38 ..................................... CGAACTTACACAGCAACGATACAAACTTTTTGTAGTCT 141514 37 100.0 36 ..................................... CGGGGCTGTCGTAGGCTTCTACTTCGTGAGTGTGCT 141441 37 100.0 36 ..................................... CTATTTTGAAGCCCTAACCAACTTGCGGGCTGACAA 141368 37 100.0 30 ..................................... CTGCATAGCGAAGCGAATCAACCACGAAGC Deletion [141302] 141301 37 100.0 37 ..................................... CCAGTGTATGGCGTTTGAAAAAGGCCAACCCTGCTGG 141227 37 100.0 36 ..................................... CCAACGTCCAGATGGCTTGGAAGCCCATCATAATGA 141154 37 100.0 36 ..................................... ACCACTGGCTAACGCGATCGCCGAGCGATTCCCCCA 141081 37 100.0 37 ..................................... GATATTGAGGACGATGGAGCCGCTCAGGAAGGCGAGT 141007 37 100.0 36 ..................................... TTTCAAACAGTGGGGCGAGCACAACGCCGAGGGTAA 140934 37 100.0 41 ..................................... GTTAATATTAATATATCGTGTAGTGCCATTAGGGGATTAGC 140856 37 100.0 38 ..................................... CTTGTACGTTATTTGTGGTTTCCATTATGTGTTCCTTT 140781 37 100.0 38 ..................................... TGTAATGCCTTGTGCGATACCAAGCGCCAAATCAGCAC 140706 37 100.0 37 ..................................... GCCATTGTGTAACTCCATTTCGTGTAAGCCATTCGTC 140632 37 100.0 37 ..................................... TTGTAGGCGCATTGGGCGCGAGTGGAGCGCTAACAAC 140558 37 100.0 42 ..................................... CATAAATCGCTATCATCACCGTTAACTGGATCGAAAACAAAA 140479 37 97.3 37 ............C........................ CGAAGGATACAGGTATCACAGGCGCGTTGCCCATAGG 140405 37 100.0 41 ..................................... CTCGCTTGAATGCTACTTTGAATCAATTTGGGGTCTTTACG 140327 37 100.0 38 ..................................... CCTGATTAAAAACCGTGATGATCGTACACTGCCTTAAC 140252 37 100.0 42 ..................................... CAGACTCATTGCCGCGTGGATTGCACCAATCAGTTGCAGTAT 140173 37 100.0 40 ..................................... TAATTACTTTCTTCGAGCACCAAATGATACTTCGCGCTGC 140096 37 100.0 40 ..................................... TAATTACTTTCTTCGAGCACCAAATGATACTTCGCGCAGA 140019 37 100.0 37 ..................................... GGGTTTGCAATCTGACCAATGTCGTGTGCCGCGCAGA 139945 37 100.0 41 ..................................... ATTGTGGCCGTGATGCACAGACCCTTGAAGCCCCTGAGGGC 139867 37 100.0 37 ..................................... ATCAGTGACTTGGCGGCGAGCGCTGGCAATCATTTCA 139793 37 100.0 40 ..................................... TAATTACTTTCTTCGAGCACCAAATGATACTTCGCGCAGA 139716 37 100.0 37 ..................................... GTTAGACGAGTTTCCTTGCTCTACGTCCGATTACATC 139642 37 100.0 39 ..................................... TAAGAACGCCACAACGATTCCCACGCGAGCCGAGGTTGA 139566 37 100.0 38 ..................................... ACAATCGGTTGGGATTGACCTGCTTCCAGTAATCAACC 139491 37 100.0 39 ..................................... GCTTTTCTTCAAAACAGCTTCAACCATATGGACAACTTG 139415 37 100.0 37 ..................................... AATACTAGCCCTCTCCCTTCATCTCACCTACAGCTCC 139341 37 100.0 40 ..................................... TTGCCAGCATGTAAATGACTTTAAGTCCGCGTGGGAAGCA 139264 37 100.0 40 ..................................... TCACCCCTAAGCGGCGCATTTCAGCCCGCGTGGTTGGCAG 139187 37 100.0 40 ..................................... GCGCTCGATGAGCGATGCCTTGCCGAGATCAAGCCGAGCC 139110 37 100.0 52 ..................................... GCCGAATGCGTCAGCCGTGTACAGGCCTGCTACCACGTCAGGGAATAAGATA 139021 37 100.0 40 ..................................... TCCGTACTAGGCTTCTCTCGTATCATACGCTTGACGATGC 138944 37 100.0 41 ..................................... CCAATTGTTCGCAGTGTTAGTGCAATGGCCCACGGCTGGCC 138866 37 100.0 37 ..................................... AGCAGATTTTGGGCTATGCCCAATGCAGAGACATTCA 138792 37 100.0 39 ..................................... CGATTCGACTTTCTTGATGCGCCCCAGCTTCAACAATTC 138716 37 100.0 40 ..................................... ATCTAAAGTCCTTCTACTTACAAAATTGCTGAAACAAACC 138639 37 97.3 38 ....................................T AGCCTGAATCTCACGCCTGAATCATTTTCGTTTCGTTC 138564 37 94.6 39 ......................T.............T GCACATTGCCATAGAGTTGTTCGAGTGCAGCCTGGACTT 138488 37 94.6 42 ......................T.............T TTATTCGTGGCGAAGTGCAGTTCAATCGTGCGGCTGATGAAG 138409 37 94.6 40 ......................T.............T CGCTCTGGCAGTTGGGAATCAACGCAGTTAGTTCAAGTAG 138332 37 97.3 41 ......................T.............. TGTCGCAAAAGACCATTGGCAATGAGTTGAAAGGCATGTTC 138254 37 100.0 40 ..................................... CCCAAGACGAATCCACCCTTTCCATCCTAGATCGAGTTTT 138177 37 100.0 39 ..................................... CTTGATGCCAGCGTCGATTAGGCTAATCGTGCGAATCGC 138101 37 100.0 37 ..................................... CATCATGTTCCGCAATCCAGACGGCCAATCGGCATAC 138027 37 100.0 38 ..................................... ACTGCATTTTGCGGCCCGCCCTGTGTTGTATAAACTTG 137952 37 100.0 40 ..................................... AGTTTTACCCAAGCCATCATCCACTCAACTGCCAGCCAAT 137875 37 91.9 0 ............C.....................T.G | ========== ====== ====== ====== ===================================== ==================================================== ================== 136 37 99.8 39 ATTCGAATAACCAAAATCCTCGAGAGGGGATTAAAAC # Left flank : GTGGCCACGCGATTTGAGAAACTGGCCCTGAACTATCTCGGATTCGTCCATCTGGCGATGATTCAACGCTTGGTGCGTATCCTTGCACCAGCGACATCGGTATCCTGAATTATCAGACAGAGCCTAGTG # Right flank : CAGATCGGGGTTTGGTGAGTCGGGTGGGAATCAAACCTACCTAAAACTTCGCTCATTTTGCAAGGGCCGATTTTTAGCGAGGTATTGAAGCACAACAGCGATTATTGATCACCACCCTTCCGTCCCGCCTCAAGGCGGGAGACGCAGGGGTTTTCAGCCCCTGCACCCCAAATATTTAGGTGTTGGAATGTTACTGTAATTCTATAACCCTAAACTTCATGTGCTTCGCGATTCTTCATTGCTGATCCCTAATCCCTAAACACTCAGCCCTCGATCACCACCCTTCCGTCCCGCCTCAAGGCGGGAGACGCAGGGGTTTTCAGCCCCTGCACCCCAAATATTCACGTTGTGGATTGTTGGGGTGAGTGCTTATTCTCGAACCTTTGTATACGTGGTGTGCTTCGCGGTTCCAATCCCTCATACCTGCCCCCTGATTACTAGCCCCTCGTTCACCACCCTTCCAACCTTACGCGAGGCTGATTATGAAAAGTATTAGTAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATAACCAAAATCCTCGAGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //