Array 1 17174-17022 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKN01000020.1 Cronobacter sakazakii strain cro211 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 17173 27 100.0 35 ........................... ACCAGACCTAATGACAAGAATCGACAACTTCAGCT 17111 27 100.0 36 ........................... GTCAGTCCCGACGACAAAAAGCTGCAACGTCAGCCA 17048 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ==================================== ================== 3 27 100.0 36 TGTAGGGTGGGTAAGCGGAGCGCACCC # Left flank : TCTGCCTGATCCGCTCGCTTATCGACAGCGGTAAAGATTACGTGTTGAGCATGCTGGAGTCGCTCGGCGCACTGGCAGGCGCGAAAACCGTGGCCAAAGGCAGCTACCCTGGCTGGCAGCCGGACGCCAGCTCGCCGGTGATGGCGCTGGTGCGTGAAACCTATCAGCGTCTGTTTAACAAGACGCCGAATATCCAGGTGATCCACGCGGGTCTGGAGTGCGGGCTGTTCAAGAAACCGTACCCGCAGATGGATATGGTCTCCATCGGGCCGACCATTACCGGGCCGCACTCGCCGGATGAGCAGGTACATATCGAAAGCGTGGGCCACTACTGGACGCTGCTGACCGAGCTGCTGAAAGCGATCCCGGCGAAGTAAGCGTTTGATGCAAAAGAAAGGCGGCCACGGGGCCGCCTTTTTTGTTGGCGTTTGTGGCGGGGCGGGTTTAAAAGGCGGGTGCGCTACGCTTACCCGCCCTACGCTTCCCGACGGCTATCATCA # Right flank : ACCGGGCCCGAGGAAAAGCCCCTACAACCCCAGCACCAGCTGCCGCTCGATTTGCGGGTCGAGCAACGTCACGTGCAGCCCCACCAGCCGCACGCCGCGCCCGCTACGGCGCTCGTCCCAGGTTTTACGCGCCGTGGCGAGCAAATCCTCTTTATTGAGCTTCGGCCAGACATGCTCCTGCGTGGTGAGCTGAAAATCGTTAAATTTGAGCTTCACGCCCTGGCGGGCGATGCGCAGATCCGGCTGAACGGCGGCGAGGCGGCGCTCAAGCTCCGGGTAGAGCCGCTCCACAATCGCCTCACACTCCGTCCATTCGTGGATATCTTCTGCCAGCGTCCGCTCGACGCCGACCGATTTACGCTGCCTGTCGCTGCTGATTTCACGGTCGTCTATCCCCTGGCTGCGCTCCCACAGCACGCGTCCGAACTTGCCAAAGCGTTTGAGCAGCGCGGCGAGATCGCTCTTTTGCACATCCTCGCAGGTACGAAGGCCGAGGCTCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGGGTGGGTAAGCGGAGCGCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7056-5989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKN01000013.1 Cronobacter sakazakii strain cro211 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7055 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 6994 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 6933 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 6872 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 6810 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 6749 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 6688 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 6627 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 6566 29 100.0 32 ............................. GTGGCTTGACTCCGCGCAGGGTCTGCCGTGGT 6505 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 6444 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 6383 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 6322 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 6261 29 100.0 32 ............................. GCATTATCCAGGTGGGTAGCGTCATTCAGATG 6200 29 100.0 32 ............................. CTTCCACCGCCAGACTTACAGACTCCGCTCAA 6139 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 6078 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 6017 29 93.1 0 .T..........G................ | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGACCCCCACCCTTTCTGGGTAAGTACTTGATAGATAACGTCTAAAGTACTCAAATCTCTCCCCCTAAGCCTTAGTGATACAAAAATTGTGTACCACCAGTAGGCTGCACTATGTCTCTTATGCTCTCCCGTCATGGGATCTGGTACTACCGGAAAGTTAATATCTTACCCTGTGGTAAACGCCATGAGTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34896-33343 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKN01000013.1 Cronobacter sakazakii strain cro211 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34895 29 100.0 32 ............................. CGGGAATTGTCGAAAACTTCGAGATATTCAAA 34834 29 100.0 32 ............................. ACGTCATCGAGGCCTATTCCGAGCACCGTAGA 34773 29 100.0 32 ............................. AGCAAGAAGTAAAAGCGCCCTTTTCATATCAC 34712 29 100.0 32 ............................. TGAAAGGCCCACAGCACAACGCGGAAATCCTG 34651 29 100.0 32 ............................. AAACAGGCCGTGATTGACCGAGACATATTGCC 34590 29 100.0 32 ............................. TGAACACTATTAATAACGAGTTTTTAGAGAAA 34529 29 100.0 32 ............................. CATCGCGCCAGAACTGCAAAATCTCGGCGTTG 34468 29 100.0 32 ............................. TTGTAGCAACGACGCATTTCACTATTAACGTG 34407 29 100.0 32 ............................. GGCTTGATAAACGTTTCTGCGATAGTCGCGGC 34346 29 100.0 32 ............................. GAGTATCTGGAAGAATATTTGCAGCTTTGTTC 34285 29 100.0 32 ............................. GTATTCGTATTCAGATGCGCGGGGTAAATAAC 34224 29 100.0 32 ............................. CAACTTCCGCTTCCGCCAGCGCGCCCCAGCCC 34163 29 100.0 32 ............................. GCGAGGGCGACTGCATAAACTTTCTGGCCTCG 34102 29 100.0 32 ............................. TTTCCCTGTCCATTTCGCTTGACCATTCCGCG 34041 29 100.0 32 ............................. GGCGCAGTGCAGCACATTCTCCGCGATGAGCA 33980 29 100.0 32 ............................. CAGTATGAATTTCCGCACCGCCGAGCGTTTCG 33919 29 100.0 32 ............................. CGCCGGACGACTGGACGGAAAATAGCGGGCTC 33858 29 100.0 32 ............................. TAATCGCCAGCGAAATTGCAGATTTTTTCGCA 33797 29 100.0 32 ............................. TTTATTTTTGGAACTTGATACAGGTTGGGTGG 33736 29 100.0 32 ............................. ATGCGCAGCTCTCGTTCGCCCGCACTATTTCC 33675 29 100.0 32 ............................. TTATTTCGTTTTCGAAAAGTGGTGGTGTTGCG 33614 29 100.0 32 ............................. GGGAGGCCAGCTAAATACGACGCAAACCTGCC 33553 29 100.0 32 ............................. CATCGCGCCAACGAACGCGGCGCACCACGGCG 33492 29 100.0 32 ............................. GCGCGCAACAGCTTCGGCTCTGTGAATAACAA 33431 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 33370 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACGGTAACGAGCCAGGTGAATCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAAAAGGGCAGCCGTTCTTTAACAAGATAGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAAATAGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //