Array 1 342397-344148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNR01000013.1 Listeria monocytogenes strain NRRL B-33375 PROKKA_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 342397 36 100.0 30 .................................... TGGCGTAATCGCTTCTACAGAAGTCTAAGG 342463 36 100.0 30 .................................... ATCAGCAATTGAAACTATTAAAAATGAGCG 342529 36 100.0 30 .................................... TTTTTATTACTTCTGATATGCAATCAAAGT 342595 36 100.0 30 .................................... GCGCGCTGGATTTGATTTAAAGTCCATTTT 342661 36 100.0 30 .................................... ACGTCCTTCCGTAACAGCTGCAAAATATTC 342727 36 100.0 30 .................................... GTGAAAGCTGTGGGCATGTATATACAGATG 342793 36 100.0 30 .................................... TATTCATATTCCGAGTTAGTTCTTTCCAAT 342859 36 100.0 30 .................................... TCGAAATTAGAAAGAATGACCGTGATTTTC 342925 36 100.0 30 .................................... TTTAGAGGGCAATGCGCACTATATATGTAA 342991 36 100.0 30 .................................... CTTTGTTGAATGCATCATCAACAGCTTTTC 343057 36 100.0 30 .................................... ACTAGCGTCAATCGACACGCAGGCGCTCAT 343123 36 100.0 30 .................................... CAAAAAAGACCCCTTAACTTCGTTGTTAAG 343189 36 100.0 30 .................................... TGAAAGTCAATGAAATGATTGTCAACCTTA 343255 36 100.0 30 .................................... TATTTACTAAAAGCTTTTCATGAAGCATCC 343321 36 100.0 30 .................................... GATGGTTCCTTTACCTTGTGCTTTTGATAC 343387 36 100.0 30 .................................... GATGGTTCCTTTACCTTGTGCTTTTGATAC 343453 36 100.0 30 .................................... CACAACAGGAAGTAATGCTTGGGGTTATGA 343519 36 100.0 30 .................................... ATTCGTTTCAAAATTATTAGCTCCTCTCTT 343585 36 100.0 30 .................................... CCCCTGGTGTTTAGCACGAATCAATCATCC 343651 36 100.0 30 .................................... GTCAAAAATGGACTTCACCTGATGATTGGA 343717 36 100.0 30 .................................... ATTGGATTGTTCGTTTTAAGAATCCCGTGT 343783 36 100.0 30 .................................... AATAACATCAGCTAAGTAACCTAAGTCAAC 343849 36 100.0 30 .................................... AATTACGTGTGTTAGATAAAACGTTTGGCA 343915 36 100.0 30 .................................... ATAGAAAAATTATGATGTAATAGGGCTTCT 343981 36 100.0 30 .................................... CGAAAGTGATTTTGTTCTATCTGATAGCGA 344047 36 100.0 30 .................................... GGGCTGGTTATTTTAGGCGGGGGAGCGCTT 344113 36 83.3 0 ........................CA.C.A....CA | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAATCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCCCTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAGGTTTTCTCGCCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTATAAGTGAAGGGACCTGCCGCTGAAAGGTGAGGGGCAAAATAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 285708-286187 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNR01000002.1 Listeria monocytogenes strain NRRL B-33375 PROKKA_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 285708 29 96.6 35 ..A.......................... TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 285772 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 285838 29 100.0 35 ............................. TCAGGAATCCCTGAGTGAGTTGAACAAAATAGAAA 285902 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 285966 29 100.0 35 ............................. TTGATTTTATTAATGTTCTTATCAATAGAGTCATT 286030 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 286095 29 96.6 34 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAG 286159 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACGGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGCCTGGAGGAAGGGAAGTTTGGCGGTATTTGCTTGGGTAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCAACATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //