Array 1 1-803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXZ01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38925 N38925_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1 27 93.1 32 --........................... CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 60 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 122 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 225 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 286 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 347 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 408 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 469 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 530 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 591 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 652 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 713 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 774 29 96.6 0 A............................ | A [800] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 98.9 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXZ01000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38925 N38925_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 89.7 32 --..........................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 60 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 121 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 182 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 243 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1484-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXZ01000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38925 N38925_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1483 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1422 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1361 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1300 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1239 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1178 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1117 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1056 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 995 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 934 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 873 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 812 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 751 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 690 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 629 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 568 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 506 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 445 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 384 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 323 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 262 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 201 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 140 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTACGTGTTTATTCATCTGTTGCATTAGATTCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //