Array 1 44891-43909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNT010000007.1 [Ruminococcus] lactaris strain MSK.16.1 NECIONCF_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 44890 29 100.0 43 ............................. ATTCGAGACCCTCAACTTACTGGTCTCACCTGATTAAAAAAAA 44818 29 100.0 40 ............................. TAAGTGCTATAATCAGTTTAAAATATTACATCACAAACTT 44749 29 100.0 39 ............................. TTTCTAGCTCCTTTCTAATTGTTGATAGCTTGATATTCA 44681 29 100.0 35 ............................. AGTCATGTTCTCAGCTTCATCAAGTTTCTCATTCT 44617 29 100.0 45 ............................. GATTGTCGGGAATCGTGAAAGTTAGTCCTTTTTCAATGAAGTGCG 44543 29 100.0 37 ............................. TCACCTAAGATTGTCATAATAGAATGTTTCATATTGT 44477 29 100.0 39 ............................. TATCCACACCATCCACAGCAAAGCCTTCATCAAGGATTT 44409 29 100.0 34 ............................. AAAAAGTTAAATCTTACTCAACTTTTTCTACTTC 44346 29 100.0 48 ............................. TAGCATACCCAAAACTTTTGGACTGTCCAATCAAGGTTGTCCAAGTAC 44269 29 100.0 34 ............................. ATTGTACACAAATCTGTCATTGAAGCGATCTGAT 44206 29 100.0 39 ............................. CAGTTTCTTCTTTGAGCTCTCTGACGGCACCATCGATTG 44138 29 100.0 45 ............................. ATGCTGTTTTCTCAGAAGTTGTTGCATCATCAGATACATCTTCTG 44064 29 100.0 32 ............................. ATTTCCCGATCATATATTTTTTTCATCATAAT 44003 29 96.6 37 .....................G....... TGAAAAATCAGCACACTTAGAAACATTCCAAGTTTCT 43937 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================ ================== 15 29 99.8 39 GTCGGACATTACCTATGAGGAATTGACAC # Left flank : TATATTACAGCATGGTATGGAATTTACAGACTTTGCGGTGAAAGAAAGTATCTTGATTTCCTGTATCAGACAGGTCTGGGAAGTAAAAATTCGCAAGGCTTTGGAATGTTTGAAATTTTGTGAGATGAAGGGAAAAGGAAGGTGCCTGAAACGGAGGCACTTTTCTTTGTGAAAAATAGTAAGAAAACTGATAAATACGAAAAAGTCTTAAAAAAGTCCGTCGACCTTAACTCCTTGGAAATACTGGGAATTTCAGCGGTGGAAAATGGAAAAACATCTATTTTAAACCTCAAAACACCACTTTTTAGAGGAAATGTGAAAAAAAGTCCGTCGACCTCAGGAAGAAAAATCGAGATATATAAAAAGGCTTAAAAAGTGTTGAATTTATAAGGAAAATCAGGATATGAAAAAACTGGTGTCGACGGACTTTTCGGCTGAAAATTGATTGATTTTAGGGAAAAAATGAAGTATGATGATAGCAACAGCTGATAAATACGGCT # Right flank : GTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGGCATTACCTTCCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATCGTAACTACTAACTTTCAACTTTATGACATGGAGAGACAGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCCGCAGCTAAGGCATCATTTAAGGGAAAAAATGACAGTAGTGGGATGGATGGTGTACGAGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAAAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATTCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGTACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGATTTCTCAGCTCATTCTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 87-2410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNT010000014.1 [Ruminococcus] lactaris strain MSK.16.1 NECIONCF_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 87 36 100.0 35 .................................... TCCAAAAAATACTCAATACTCACCCCAAAGTAAGT 158 36 100.0 36 .................................... CAGTCAGGAAAGGTGATGGAGGGGGTCAGCGTGGAG 230 36 100.0 37 .................................... GAAGAGAAGACTGGGAGACGGATTCCCGAGGATATCT 303 36 100.0 35 .................................... TGAAGCAGAGGTTATGAAGCGGCTCGGATTCAAGC 374 36 100.0 36 .................................... AGATTCTGAAAACGTGGAACGATTCCAAAGAAGTCG 446 36 100.0 34 .................................... TTGCTATTGTAAGGACATTTGCATATAATGAAGA 516 36 100.0 42 .................................... TATTCGAGATTGAAAAAGCATATCTTGAGGAGTGCGAGGAGA 594 36 100.0 36 .................................... TTTTACACCATTGTTTTAAACATATATTATTTCTTT 666 36 100.0 35 .................................... TTGTCTTGGTTTTCATTCTGATAGTCGACATTATT 737 36 100.0 35 .................................... AAAAAAGGTTATTGTGTTGCAAATATGCTAGCTCC 808 36 100.0 37 .................................... TAATATTGTCTTGGTTTTCATTCTGATATGTGTAACC 881 36 100.0 33 .................................... GATGATTAAATTAGAAAAAAATAGAACTTATAA 950 36 100.0 37 .................................... TGACTATGTGCCGGATGATACAAATAAGAGCGGCTTG 1023 36 100.0 35 .................................... CTTGCCAATCGTAACGCATTGTAATCTACCTTGCC 1094 36 100.0 34 .................................... TTGCATACACAATATAACCATCTTTGTCTCTATT 1164 36 100.0 35 .................................... CATGTTTGCAGAAAAGGTAGGAGAACAATAACATT 1235 36 100.0 35 .................................... TGTACGGTATCTTCTGTCAGAATGTCCATAACAGC 1306 36 100.0 34 .................................... GCAGTTTGAAAATGTTGTAAATGAATTGAAACAA 1376 36 100.0 34 .................................... GGAAATCATGCACACTTATCACGATCTCACTCCT 1446 36 100.0 38 .................................... GATTATTATGGCAGCACTTAATAGAAGCAATAACAAAA 1520 36 100.0 34 .................................... GCGAAGCCAAGAAATGAAGAAAAGCCTAATGAAT 1590 36 100.0 36 .................................... TCAAGGTCATCACTCCCCCAGTCCTCGGACATGGTA 1662 36 100.0 37 .................................... AGTAACTCCTCTCAATAGCAGACGGTTAGCACGTTAA 1735 36 100.0 36 .................................... CGATATGGGATTAAACATATCGCCGTTCCCGGTTCT 1807 36 100.0 37 .................................... GGAATGGAAAACCAATGCATCAAACAAACTGAATGAA 1880 36 100.0 35 .................................... TGTAGCTTTGCAACCGCATTTCGCGTCATTGCGTC 1951 36 100.0 35 .................................... GGAGGTGAGAGACGTGGAGCAGTTAAAGGTAATTC 2022 36 100.0 35 .................................... AAAATCATTGTTTTTTTAGTAACTACAGTAACAAT 2093 36 100.0 34 .................................... GGTTGCTTCTGGAGATATAACACTTGAAGAATTG 2163 36 100.0 37 .................................... CGGTGCGGAATATGCTGCAACAACTCCGCTGGGTCCG 2236 36 100.0 34 .................................... CAAGGGGGTGAGAAAATGAAAAAAATTGAAATAT 2306 36 100.0 33 .................................... TAGAAACATGATTAATATTGATATGTGGTACGA 2375 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 33 36 100.0 36 GTTTTCGTCCCCTCACGGGGATTTCTCTTTTTCTAT # Left flank : TTATATATATTTGGAACTTCTCATTTTGACTTGTACTATTTATATTCTAGCACCATACACTTCAACCGTTGCATCGGTTTTCTTGTG # Right flank : TCCTATCTCATATTCCCCTTATAAATCAAGGGCTATTTTTATAATTTGCGGTGCAAACATTTTCAAACCAAGTGAATGCTATTTTTAATCTCCAAATTCCCCCGCAGCCCTTGATTTATAGGCTGCGGAGCAAAAACGCACTTTTAATTACTTTTTCCTTTGCTAACTCTTCTCCCCTCAAGTCTATTCTTTCTTCAATACTCTCAACTGGCACTTTCCCATATCATATAATTGATTATTATATCTTGTGCATTTACATACATGAGGAGACACTCCTAATGAACGATCTTTATCATGTTTATGCTGTCTGAAAATTTTCTCTGATAATGTTCCTTTAAAAATACCCTGAGCCACCTGCACGGCTTCCCGGTCAAAAAGACTGTAAATTACCGTTTTCGATAAATAGCCGACACCACCACCGATCCATACTATTCCTTTCCGGTTATCCCCTCGTCCAAAATGAGAATAAAATCGCTCATAACAAATTTCATTAAACAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCCCCTCACGGGGATTTCTCTTTTTCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 4766-2999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNT010000080.1 [Ruminococcus] lactaris strain MSK.16.1 NECIONCF_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4765 36 100.0 32 .................................... TCTTTTGATACTGCATAAGCTGTTTTGTTATT 4697 36 100.0 36 .................................... CACGCAGTATTGTAATTACGCTTTTTCTGACCGATA 4625 36 100.0 33 .................................... AAATCCACTAATCCAATCGTCATGCTAAATAAA 4556 36 100.0 36 .................................... AGTTTTTACGAATTCTTCTGCATTCACTTCTTCTGT 4484 36 100.0 35 .................................... AGTTAAAAGCAGGAATAGACAGAACTTTTGAAATG 4413 36 100.0 35 .................................... GGATTAGTGGAAATAAGCTCTATTCCATCTCTATA 4342 36 100.0 33 .................................... AGTACTTCCATTTTCTAATGTTCCAAAAATCAT 4273 36 100.0 40 .................................... TAATCGTATTCTGCTTCACTGATTAATTTTCTGATTTCTT 4197 36 100.0 37 .................................... GAAAATAAAAAAAGATGGTAGCAAAGCAAAGGTTGAA 4124 36 100.0 36 .................................... CGGATTGTCGCTATAGTAAAATGTATCTCCATCTTT 4052 36 100.0 38 .................................... TTATTACGGAATTTGAAACACCGGAATCGGCAAGTTAT 3978 36 100.0 37 .................................... CGTTAAGGCTTTCGTATAATTCTTCCAACGTATCGCC 3905 36 100.0 34 .................................... GCTAAAGCGTACGCTACTGTATACAGAATAAACG 3835 36 100.0 37 .................................... GGGAGTATAATAATATTTATACATCCTATCCACTCTC 3762 36 100.0 37 .................................... TGAAATGCCGGAATAATAGCATACTTCACGAGTTTAG 3689 36 100.0 38 .................................... AATTTTCATAGATTTCAAATCGCTTCATTTCATATCCT 3615 36 100.0 38 .................................... TCTCTACGACCTTATCGTATGTATCCGGCTGTCTTACC 3541 36 100.0 37 .................................... AACTTTCACAATTTACTTATTCACTTTGCACCTGTTC 3468 36 100.0 34 .................................... CCATGTTTAATTTTCGATCTTCGAAAGCTCTGTG 3398 36 100.0 40 .................................... TTATACCACTGTGGCATCATTTCATAATCTAACATTTCTA 3322 36 100.0 35 .................................... CTTTACGGCAAGCTCTGTGTATTCACTGGCACATT 3251 36 97.2 35 ..................T................. AAGAATCAGTAATATGATTCCCACGATTAAGTCCA 3180 36 97.2 35 ...............C.................... CGGCTGCGATCTATGTAGTTACTGATATACGAATC 3109 36 100.0 39 .................................... ATCCTCTCTACTCCGGACGGGGAACATTTCAAGTATAGA 3034 36 83.3 0 ...........A...A....AA............TT | ========== ====== ====== ====== ==================================== ======================================== ================== 25 36 99.1 36 ATAGAAAAAGAGAAATCCCCGTGAGGGGACGAAAAC # Left flank : AAAATGGGTAGAAATTTCTCATTTTAACTTGTACTAAATCTTGACATAGGACCATGTATGCT # Right flank : TCTAATTAATATTTTCCCTATAAAACATTGTGTTAAAATAGAAAAAGGGGGGAAGCCATTTTCGGATTTTTATAAATTTCGTTTCTTGGATAGGAAAAGCCCCCGTGAGGGGATGATACTTTGAATACCAAAGATAGAGTGATGACGAGGAAAAAGAATAAGAAAGGAGGCAGATTATGAGCTATTTATATGTATCAGATCAGAGTGCAGTAATTAGTTATTCGGCCAATCGATTTCAAGTAAAGTATAAGGATGGCATGCTGAAAAGTATTCCGGCAGAAATGTTGGAAGTGATAGAAGTATTTGGAAATGTTCAGATTACAACGCAATGTTTGCGGGAATGCCTGCAAAGAGGAATCAATATCATCTATTATTCGACTAAGGGAGCGTATTTTGGAAGAGTTATATCACCAGGTCATGTGAATGTCTTTCGGCAGAGACGGCAGGCGGAGTTAGGAAAAGATGAAAAGTTTTGTCTTGAATTTTCTAAAAAGATTATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGAAAAAGAGAAATCCCCGTGAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 9027-11689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNT010000022.1 [Ruminococcus] lactaris strain MSK.16.1 NECIONCF_22, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9027 36 100.0 29 .................................... TATTGCCATATCGACATATACGAAGTCCA 9092 36 100.0 31 .................................... TGTGAATATGGAAAGGAAAGACTAAAACATG 9159 36 100.0 30 .................................... CGGTAACGCATTCATCTTATCCCGAATCTG 9225 36 100.0 30 .................................... AAATCTCTATCATGTTACATACCTCTCACG 9291 36 100.0 29 .................................... TGAACAGGAGCGGTGCCAATGTGTTTCCT 9356 36 100.0 30 .................................... TGTATCTTAAATACGAAGCCCGCTACGCTC 9422 36 100.0 29 .................................... TGTGCGTCCAGTTCTCCTGCTACATTATC 9487 36 100.0 29 .................................... ATCAAAACAAATGTGCAGACGATTCTTGA 9552 36 100.0 29 .................................... TTCTTTTCCTCGTCCGACATCACATGACC 9617 36 100.0 30 .................................... TGATAGCATAGTATTACCTATGAGTCAATA 9683 36 100.0 30 .................................... GATTCCGAAAAGACAGTAATAGTAGAAATC 9749 36 100.0 29 .................................... GGAGTGCAAACTCATTACACTCCTCGTAT 9814 36 100.0 31 .................................... TATTCAAACACCCTACTCACATGGTTTTACT 9881 36 100.0 30 .................................... GAAAGCTTCATTGATTCTTACGGGATTGTT 9947 36 100.0 30 .................................... TTCGTGACATTTTCCATCCCTCCTTCAACA 10013 36 100.0 29 .................................... AAAATCAACAACGGCGATGATTCCACTCC 10078 36 100.0 30 .................................... AACTGGCCCGGTGCATATTAACAGTTTCCC 10144 36 100.0 29 .................................... CGTCTTCATCAGCTTGAACAGGAATATCA 10209 36 100.0 30 .................................... CAAAGAAAAAGTTTGTATTTGCATAGCACA 10275 36 100.0 29 .................................... AAATCTTGAATATTTTCTATTGTTGGTGC 10340 36 100.0 30 .................................... CAACCGATCCATTCGCATCTGATACAAGCT 10406 36 100.0 29 .................................... GACGGGAAAGCTGTGGATGCAGAGACAGG 10471 36 100.0 30 .................................... GTGGTCAAAGAAGAAGAGCAGGGACGGGTT 10537 36 100.0 29 .................................... CAATCAATGAATCAGAAATGATACAGAAT 10602 36 100.0 30 .................................... ATGCGGACGGGTTTCCAATAAAAATTATAC 10668 36 100.0 31 .................................... AATGGCAACACGTATTATATTATGTACTGCC 10735 36 100.0 29 .................................... CTTTTTTCGCTGATTCTTCCACAGCCTCC 10800 36 100.0 30 .................................... ATCGCACTTGCTTACGTAACTACTGTTGCT 10866 36 100.0 30 .................................... TATTTCAGATCGCATATCTAAGCCAGATAA 10932 36 100.0 29 .................................... CTGTGACATTTCGACTGCACCCGAAAAGC 10997 36 100.0 30 .................................... AATTAAGGTGAAGGATAGCATAAACCTAGA 11063 36 100.0 29 .................................... GATAGAACAAGCTATGAGTGTGTGCCTTG 11128 36 100.0 30 .................................... GACGCTAAAACTTTCAAGATCTGATAGAGA 11194 36 100.0 29 .................................... ACAAAATTCTCGGGAATTTTAAACCAGCG 11259 36 100.0 30 .................................... TGGATGCATGGTCCTGGACATTCTTTCGCC 11325 36 100.0 30 .................................... TTCGGCAGTGGCTACTCGTTCGATGACCGT 11391 36 100.0 30 .................................... CATAGTGGCTACATTCCTCATCTGCAATAT 11457 36 100.0 29 .................................... CAATCTTTGCATCTCTTGACATATTTTCT 11522 36 100.0 30 .................................... TCATCTTCTTCAATGGAATCGTATGATCCG 11588 36 100.0 30 .................................... TGCGGTGGCAGATATCGGGCAGCAGTGTAA 11654 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AACTGATCAGCAAACTTTATATGGAATTGGAAAAGCTTACTGCGGACGAACGATTCTATGTGAAAACCCAGGAAATGAAGCAATATCTGCAAGAGTATTTATTACAGCTTGAACAGGAGACAGACTATATCCTTGATCTTGCGGATGAAATAGATTTTGCCTCATTATTTAAAGCTTTTGGTATTAAATATGAGGTACTGGAAGAAAACTTCTTAGAACGTCTTGTGAGATATATGCGAATAGTGGAACGATTATTAAAGAAAAAGCTTTTTGTATTTGTTAATTTGCGAAGTTATTTATCAAATCAGCAGATTGATGAATTAATAAAAGAAGCGACGTATCAGGAAATTCAGCTTTTATTGATTGAAACCTGTGCGAGAGATTGCATTGAGGGTGTAACAAGGTATATTATAGATAAAGATGGATGTGAAATATAACATCCTAACAGTTTGAGTACCTGTATTTTATGCGAATGATGGCATTTCATTTTTGAATTTGAG # Right flank : CTAAGCACAGGGAAATCATCAAAGATTCTTATACATGGAACTTCAAAAACGTGGCATATTCCGCATGATGCATGGAAAATTATAAAAGAAAATCATTACGAGTGGACAGCTCATTCCCATCCGACAATGACGAAAATAATTGCGTCACCGGAAGATCGAGAGACGTTAAAGCTATTTACCTGGCAAGAAAAAAGTATTATAATAGATTTGAAAGGTAATACAAAAGAGTTTACTGCAAGCACCCAGGATTGGATCAATGAGATATTAGGAGTGACAGGTTATGATAAGCGAGAAAAAGGCAACGAATATAGCTGGCCAAAGGCTGATTGAAAAATATGGACGTGCTTATGTTGAAAAATACAAGAACCATATTGGAATTATGTGGGAGAAAAAGTGTGGAAAATTAATAGTTGATTTTGACAAATACCATAAAGAAATAAATTCAGTGCCAGTAACTGATACAAGTGATGGGATTACGGTGAATGAAGACAATTTCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 9954-11971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNT010000043.1 [Ruminococcus] lactaris strain MSK.16.1 NECIONCF_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9954 32 100.0 36 ................................ AGTGCTGCGAACAATGCGGTAAGAACGATCTTTTTC 10022 32 100.0 34 ................................ AACTGGGCTGATCCGGTAAATGGATATGCCGGAA 10088 32 100.0 35 ................................ AATGTCCATGTCCTCATCCTTTGCCATATGCACTC 10155 32 100.0 34 ................................ CTTTTGCACTCAGCGTCTTGACAATATAAGTATC 10221 32 100.0 33 ................................ ATTCCCTGTGATCCATTCGCTATCGTTACATCC 10286 32 100.0 34 ................................ CTCATACACATATTAACGTAAGCTTCAGGAGTCC 10352 32 100.0 33 ................................ CACATGGTCTGCGAACTGCTGGTAAATAAGTCC 10417 32 100.0 35 ................................ GAGGATATTGGAGAAGCGATGGCAAGCGTGTCGCA 10484 32 100.0 34 ................................ AACGCTCCCATCGTCTTTCCGGCAAGGATGAACG 10550 32 100.0 34 ................................ GATGATTACATGGAAGAATGGGGAGTTGACGAAG 10616 32 100.0 35 ................................ GTTGTGAACGGCAACCTTTGCTGTCCACGCAACAT 10683 32 100.0 34 ................................ ATTTTTGATGAGATCAGAAAAACTGGCCCATTCA 10749 32 100.0 35 ................................ ACTTAATAAAAATGTAACAGCTCCAATTGCGGCAG 10816 32 100.0 34 ................................ ATTTTCCGCCTCCTATCCCGGTATCCATCTCACA 10882 32 100.0 36 ................................ ACGGAACATATAGTCCTCTCCTGCTGACTTCTCAAA 10950 32 100.0 35 ................................ CCGGTACAATCCGGGAACATATTGAATTTGATTGT 11017 32 100.0 33 ................................ CACCATATTTTTTATATAGGAATTGCCCATGTG 11082 32 100.0 33 ................................ CCTGTATCTGCTGACCAATCAGTGTTCCATCCT 11147 32 100.0 35 ................................ ATGGCTTTCTGTGCATCCAGTGATCTAACGAACAG 11214 32 100.0 34 ................................ CGGTTTTGGCATAATTCGTACCCGGACCTTTGCG 11280 32 100.0 36 ................................ ATCGTCCTCCGTAGCTGTCCAGTCAATGTCCTGGCC 11348 32 100.0 35 ................................ GGCTGAAAATGTTTTGTACTTTTGTTTTATGTTGA 11415 32 100.0 34 ................................ CTGAAGCAGTGTTAAAAGTCGCAGGGTACAAGGA 11481 32 100.0 33 ................................ CATTTGTATCAACGTATGCCATTACAGCACATG 11546 32 100.0 34 ................................ GATTGTAAACGCTGCCTTTCCCTTCGGGCAGTTT 11612 32 100.0 34 ................................ CACGGAAGATTGCCGGAATCAACAGCAAGCAGGA 11678 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 11743 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 11810 32 100.0 33 ................................ GACTCTCTCTATCGGGAAATCGGTTGCTATTTT 11875 32 100.0 33 ................................ ATTTGTGAAGTCGGCGTGGGGGTGGGAGTATGA 11940 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 100.0 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATGAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACATTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //