Array 1 11244-10219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXAI01000002.1 Bacillus altitudinis strain DSM 26896 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11243 32 100.0 33 ................................ TCTTTCCTGAAGCGTCGCTGACTTTTTTGGTCA 11178 32 100.0 33 ................................ ACTCATGGCATCTAGTATTGGTGTCTCTGTGCT 11113 32 100.0 36 ................................ ATGTAACTATGGAAGAATACGCCCATCAACGTTAAA 11045 32 100.0 35 ................................ AGCTTTATTGATCCTGCCCTTGAAACTGCTGAGAT 10978 32 100.0 33 ................................ AAAAGTAATTGAAGAATTAACAAAAATTCTAAA 10913 32 100.0 35 ................................ AGTGCGGCTGGGCTTTAGATATTAACGGTAACCCT 10846 32 100.0 33 ................................ TGGTATATCAATGGCTTTAAGTAAATGGCTTTC 10781 32 100.0 33 ................................ TTTTCATTGTCCTTTGAGGACTTGAACATGAAC 10716 32 100.0 36 ................................ GACTTTGCCAATCAAGGCATCCCGAATCAAGGCGGG 10648 32 100.0 36 ................................ TAGCTGGCGTCGCTAACCTGATCAAAGACGTACCAA 10580 32 100.0 34 ................................ CGTATTCAATATAAAAACGGCCGCATTCTCGACA 10514 32 100.0 34 ................................ CTTTTGAACCCACAACGGACGATCGTCTGCTATT 10448 32 96.9 33 .........C...................... CTGGGGCTTACGAGTTACGACTGATCAGCATTT 10383 32 96.9 34 ...........C.................... TTATTGTAATCGAATCGACCTTTAGCCCACAGAG 10317 32 90.6 35 ......T....C.......T............ AACAAAAACGATTTTAAAATTGATGCTGCTGCATC 10250 31 78.1 0 ........T..C......A....-..C...GG | A [10230] ========== ====== ====== ====== ================================ ==================================== ================== 16 32 97.7 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCTTTGGAAGTAGGGGGATGTTTTTATATGATGGTTGTGGTTACGTATGATGTCAGTACAATTGATAGAGCTGGGAAAAGAAGACTGAGGAAAATATCTAAAATTTGTCAAAATTATGGTCAAAGGGTACAACATTCTGTTTTCGAATGTATTGTAGATTCAACGGAGTTTGCTATGTTGAAGAATAAGTTGTTGCAAGCTATCAATGAAGAAAAAGATAGTATTCGATTTTACCAAATAGGTAACCAATATCGAAAAAAAGTAGAACAAGTTGGTGCAAAGGAAACAATATTTGTAGAAGATCCTTTTATTTTTTAGGTGCGAATGTGAGGTGCACATAGTTTCCCTGAATCATTCGCACTTAAAAAAGAAAGATTTTTCGACAAACTCTATCTTTATGTGTCTCAATAATTTATATTTTGTATAAATAGAAGTATCTTTTTTAACTGATTTTGATAAAAAAAGTAGTTTTATTTGTTTTTTTTACTAAAAATCGCA # Right flank : TCTAACTTATTATTTATGTTGAATTTTTAATGGATGCTAAATTATCATTCTTTTCAAAAGATAGTAAGTTTGCATATTTTTATTTCAGTAAAATTCAATAGGAGTTCAATAACCTCTTTTCCTTCAAATTTAAAGTGAAAGAGGTTTCAATGAAGATTGATCAGCCTATATATGCTGACAGCGTTTTGTTTGGCTTTTGTCATAAACAATGTACCTCGTTTGATGCTGCCCATCTATATACTTTCAATGATCGGGCTTATGTTCTGTCTCGGTCATATTGCGCTCCATTATCTACAGCGGATCAGATATTTGTTATACGATGAGAAACAATTGAAAGAGAATCAAATAAACAAACCTCCCGCTAAATGAAGGAGGTTTTTTACTTGTCTGTTTTTCAATGATTTTCTCGTTTGACTCCTTGAATTGTCTCAAAAGAGAGACGATGTTCCTCGTAAATCTGATTTGGACAATCAATAAGAGCATAATGATCCACGAGCTAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 250141-251919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXAI01000005.1 Bacillus altitudinis strain DSM 26896 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 250141 32 100.0 32 ................................ TTGTATGTTAGATAAGTTTATTTCTTTATCAT 250205 32 100.0 33 ................................ TAAGAAAAGTAGTGCCAGTATTGCAGCAGTTGA 250270 32 100.0 34 ................................ TGTAATATTTTTGCTTTTTCCAAAACAGCCAGTA 250336 32 100.0 35 ................................ TGCTTTGAACGGAGAGAAAACCCACAGCACCTATT 250403 32 100.0 33 ................................ ACAAGACATTGCAAACAAGCTCAATGTCTCCAG 250468 32 100.0 35 ................................ AAATAAATCTTTGTCACAAACTCAAAACGAGTCAA 250535 32 100.0 35 ................................ AGCAAAAAGCTGGGTGACAGGTGATGCTATAAAAG 250602 32 100.0 33 ................................ AATGCCTATAACGTTTCATGATTCATCAAAAAT 250667 32 100.0 35 ................................ AACATACGCAAGATGAAATTTTTTCAACCTTACAA 250734 32 100.0 34 ................................ GACTCGCGCTTTGCCATGACGACATTGCCCTCTA 250800 32 100.0 35 ................................ ATTTTGTTTGTCGCTCATACCATTACCTCCTGATA 250867 32 100.0 35 ................................ TCAGAAGAGACATGCTCCCCTGATGACGTTTCAAC 250934 32 100.0 33 ................................ CGCTATCTCCAATCCTTGTAATGCACCATAGAT 250999 32 100.0 33 ................................ CTAAATCCACTGAGACAGCAGGCTTATCGAACC 251064 32 100.0 33 ................................ ATCCAAACACCGTCACCGGATGTGTTTGAAATC 251129 32 100.0 33 ................................ TATTATGAATACTCTTGTCAGGCAGAAGCTTAA 251194 32 100.0 37 ................................ TTGACGCTCATCTTGCTGACGGTGTAAAGCATGTGAC 251263 32 100.0 34 ................................ TACCCGGACAAAGGCGCCAAGAATAACGGTATCG 251329 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 251395 32 96.9 34 ............G................... AAAAAAGATGTACCACGGATGCCATGAATATCGG 251461 32 90.6 130 ...........T.......T.......A.... TACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCGGGGGTGAAAACTTAATTCCTATATAGAAATTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA T [251490] 251624 32 96.9 34 .............A.................. AGAAAAAGAAAAGTGTGATGAAAAAGAATATCCA 251690 32 96.9 35 .............A.................. TCGCGATGTTGAGGGAGACGCGGTCTACGGCAAAT 251757 32 96.9 33 ........T....................... ATTTCAAGAACTTTTGTAATGGCTCTCAAAAAA 251822 32 96.9 33 ...........T.................... ACAGTACCACCGCCTTTTAGATAACGCATTACA 251887 32 90.6 0 ...................T..A....A.... | T [251916] ========== ====== ====== ====== ================================ ================================================================================================================================== ================== 26 32 98.6 38 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAAATGTCCGTGAACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAAAATAATTGGCCGTTCTCCCAAATGAGTACAAGTCGCACTCTACATGAGTGCGTGGATTGAAATACGGTTAGGGTTTTCGGTTAAAAATATTCGTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTTCATCCCACATCGGCGACACCTCCGGTTAAATGTCGCACTCTACATG # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 252206-252632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXAI01000005.1 Bacillus altitudinis strain DSM 26896 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 252206 32 100.0 34 ................................ AAAAATAATTGGCCGTTCTCCCAAATGAGTACAA 252272 32 100.0 33 ................................ ACGGTTAGGGTTTTCGGTTAAAAATATTCGTCC 252337 32 100.0 35 ................................ CGTTCATCCCACATCGGCGACACCTCCGGTTAAAT 252404 32 100.0 34 ................................ ACTTTGATCACTCCATGTGATATAATTAAGATTC 252470 32 96.9 33 .............A.................. TCTGAATAGACCTTTTTCAATTCAACGGATTTA 252535 32 100.0 34 ................................ AGCGATGACAAGGCTCTCAAGCACATTGTATTTT 252601 32 75.0 0 ..........C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTCGCGATGTTGAGGGAGACGCGGTCTACGGCAAATGTCGCACTTTACATGAGTGCGTGGATTGAAATATTTCAAGAACTTTTGTAATGGCTCTCAAAAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTACCACCGCCTTTTAGATAACGCATTACAGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGACAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //