Array 1 573-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMQ010000214.1 Acidithiobacillus ferriphilus strain Malay Contig214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 572 28 100.0 34 ............................ CTTTTGACTCCAAAACGTAATCGGGCACCATTCC 510 28 100.0 33 ............................ CAACCCCCAGACGCAGATATTGGGTTTGCTAAA 449 28 100.0 33 ............................ TGGGATGAAGTTGCCGACGAAGTTGCTAACTGC 388 28 100.0 33 ............................ GGATCCATCCATGGTGAAAAGGGGGATATACCA 327 28 100.0 33 ............................ GCACGATCCAAACTACTCCTCCTTGCTTTTTCC 266 28 100.0 33 ............................ TCCAGAGCATCGGCCACGGTACGAGCTCTCAAC 205 28 100.0 33 ............................ AAATGATTTATTTTGGTCGTATTTAATCCTCTC 144 28 100.0 33 ............................ AGGGAAAACAGAGGGGCAACTCAGGAGCGCACT 83 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 TTCTCACCCCTGCGCACAGGGGAACACC # Left flank : CCTGCGCACAGGGGAACACCGCCGTGGATCGGTCAGAGACCTGTTTGTTTTTTT # Right flank : CACCAGCCAGGGGATCCTCTGGATCTATTAATCGTTCTCACCCCTGCGCACAGGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCACCCCTGCGCACAGGGGAACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 383-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMQ010000265.1 Acidithiobacillus ferriphilus strain Malay Contig265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 382 37 100.0 35 ..................................... CTGGCGGTTTTTGTGCGGGTCATCGATCAGCAGCA 310 37 100.0 36 ..................................... TAGCGCCCGCATCATCGCAACGCTGTTTTCCATCAT 237 37 100.0 36 ..................................... ATTGACACGCAAGAACGGGAAGGACAGGAGCAACGA 164 37 100.0 36 ..................................... GGCAAGATAATTGTAGTAACGACGGTATTTTCGTTT 91 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : ACCGTACCTGAGCCGTTGAGGAGGCGTAATCATGCTCATCATCGTCACTTATGATGTCTCTACCGAAACGGCAGCGGGGCGCAAGCGCCTGCGCCGCGTGGCCAAAGCCTGCGAACGGGTTGGCCAGCGTGTGCAGAAATCTGTTTTTGAATGTCAGGTCAATCAAATGCAGTACGAGGCTTTTGAGCGCACGCTGCTGGCGGAAATAGACGAAACAGTGGATAATCTCCGCTTCTATCGCCTCACAGAACCCACCGAACTGCGCATCAAGCAATATGGAACCTTCCGATCTATCGACTTTAATGGTCCTCTCATGGTTTGATGCGCGAACCCGGATCGGCGTCTCAAAGCCCGTCCTTTCGCGCGCCGCATATCCTCCTGTTTTATTATCGTTTTTATTAGAAGTCCTTGGGGTCCTTATAGGTTTTCATGCGGGTCCGTCTGCTATTCGCGGTATCTATAAAGAAAATTGTTCATTAACAATGTGTTGCAACAATGCA # Right flank : CACTTAGTGCGTGCTGATAATATTAATCCATGGGTGTATCGCCCGGCTTATAAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 55-233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMQ010000081.1 Acidithiobacillus ferriphilus strain Malay Contig81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 55 37 100.0 34 ..................................... CTTTATGGCGCGGAGCGTGCGGCCACTCACAGTC 126 37 100.0 34 ..................................... CAAAGCAGCTTGCTGCGCCTCTGGTCCGTCATTC 197 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : ACCGGGCGTGGATTGAAACCTGTGGATCGCGGAGAACGGAGATACTGTATTCTGG # Right flank : CTTAGTAGGACTCTTATCCGCCTGCCGATGAGTGAGTATCGCCCGGCTTATAAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 54-1020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMQ010000145.1 Acidithiobacillus ferriphilus strain Malay Contig145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 54 37 100.0 35 ..................................... CGGACGTAATTGTAGGCCATCACAAAAACAATGGC 126 37 100.0 33 ..................................... AATGTGGACGTAATTGAGGATACCCAGACCTGG 196 37 100.0 35 ..................................... CCCCAATTTAGAATAGTGGATCGACATAGCCCGGT 268 37 100.0 35 ..................................... GCCATATCCCGATGCGGCTTCCATCTCACGGCCCG 340 37 100.0 35 ..................................... CCTTATCGGTTTTAGTGTTTGATTGTACCATTATT 412 37 100.0 35 ..................................... CGTTTACCACACTTAAAAAATTACTAGCCACTTTC 484 37 100.0 34 ..................................... CCCTTGATGAGCGCCATCATCTGCTCCCATAAGG 555 37 100.0 34 ..................................... CGGGGAATAGTCTCAATGTTAATCCTATGCGCTT 626 37 100.0 35 ..................................... CGGACGTAATTGTAGGCCATCACAAAAACAATGGC 698 37 100.0 34 ..................................... CCCTTGATGAGCGCCATCATCTGCTCCCATAAGG 769 37 100.0 35 ..................................... CGTTTACCACACTTAAAAAATTACTAGCCACTTTC 841 37 100.0 35 ..................................... CGGACGTAATTGTAGGCCATCACAAAAACAATGGC 913 37 100.0 34 ..................................... CCCTTGATGAGCGCCATCATCTGCTCCCATAAGG 984 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 14 37 100.0 35 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : AACCGGGCGTGGATTGAAACTGCGATGGGAAAAAGCGGCTAAATTTCCAGCCCG # Right flank : CGCATCGTCTTATCTCCATCCGTGTAACGAGTTAATGTATCGCCCGGCTTATAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA //