Array 1 9113-9326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPA01000035.1 Acetobacter indonesiensis strain DmL_051 Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9113 29 96.6 32 ....C........................ ATTGATGGCACGCCGGTAATGAAAATTTCGGG 9174 29 100.0 32 ............................. CCCGAGAGTGTCAGGCTGGTATGCCGGATTGC 9235 29 100.0 32 ............................. CTGACGTAAATGCGCTGGTTATTAATCCCGAC 9296 29 82.8 0 ..............T........A..TAC | AA [9317] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGTTCTTCTGGCTGGTGGCGCAGAACCACCGCCTGCACAGCCCGAAGCAATGCCTGTGGCCTTTGCTGACCCGAAAGGACTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCGCGTTTGCGGGGGCGGCTGGCAGTCTGGCTGCTGGAGGTCCGGGCTGGCGTTTACATAGGCAGCTACGGACGCCGAGTGCGTGAAATGATTTGGGGACAAGTCTGCGCCTATATAGAAGATGGAAACGGTGTCATTGCCTGGGCCGCCCCGAATGATGCGGGTTTTGAATTTGATACATGCGGCAAAAACCGCCGTGTCCCAGTTGATCTGGATGGACTGCGATTTGTTGCTTTTGGCCCCGAAGCTGCATTGCCAGCCCAACAGGGCCCAGCCACAACCATACTTCCCCGCCGACGCGGAAGAGGGTAGAATACAGCCTGCGTAATCGGTAGTTTCTTTGACAACAAAATAATCCTTTGAAATCAACTCTTTCCAGAAAGA # Right flank : CAGTTAGAACGTGAAAGCCACGTTAGCGTTCATCTATGATGCTTTTGTTGCCATATAGGCGTGAAAGACACCGAATGAGGTGTGTTTGCGGACGTTTGAAAATCCGGCCTGTTTCAGGTTTTGAAGAATCTGGTCAGGGGGGATGCACTGTTCGATAGTATCCCAATAATAGGCCATCAGAGTGCGGCTTTCGCGGGATGCGGTAACGCCAGACAGGAAGGGCACTACTTTTCCCAGGTAAAAGCGCAGAAACGCTTGCACCGCGGGGGAACGGGCGCGGCCGATTTCAAGAATAAGCATGTTACCGCCGGGTTTGAGAACCTTCAGATACCCGGTGAATGTTGCGTTCAGATCCCGAACATGACGCAGGGCATACCCCATGCTGAGCATATCCATGCTGTTATCGGCAAAAGGCAGGGCCTGCGCATCGGCCTGCACAACCTGAATGGGCAGTTTGCTTCGGCATTCTGCTAACATACCTGCGCTCATGTCCAGCCCGA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 64809-65142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPA01000035.1 Acetobacter indonesiensis strain DmL_051 Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64809 29 100.0 32 ............................. ATTTCCGCAGGCAGGATTTCGGCGCGCAGGAT 64870 29 100.0 32 ............................. GCAGCAATCCAGCGGGGGCTGTGGCAATCTGG 64931 29 100.0 32 ............................. GTGTTCAGTATTCATTATTAAAAATGATTGAG 64992 29 100.0 32 ............................. GCATTTTCAGTAGGGGCAACAAATCCAGCATC 65053 29 100.0 32 ............................. AACTGTCGGGGGCAGCACAAATTCTGCGTGCA 65114 29 79.3 0 ..............T..A.....A..GTT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : AACGCACCCAGAGCAATAATCAGCCCGCTATCGCCCAGTAGTTTACCCGCCCCAGCCTGAAACGCTGTCAGCGCACGGGCAGGTGCCAACCCTACAGTGGCGCTGAAGACAAGCGCCCCAATCAAAATGCCCAGAAATGGCGGAAGCTTTGCCACGCTAATGGCAAGGATAATCACCAGCAACGCAAAAGCACATGACAGGACTAACCCTGTATCGTGCGCCCCCCAGACAACAAGAGAATGCAAGCTCGTAGCCCTTTATGTTCTTCTTTTTGGGCTATCTCACCCTATCTTGCGGGCTGAATACACATCAGGAATGCGTGATGTGTGACGTCGGGCGTATTACTGTGGCCTTTGCTTGCAGCAGCATACCTCATGGTGCGTTAAGGCTGTCCCACGGCCTCTTTCGCGAGCGTAAAAAACGAGCTAAAAAAGACATCAAAGTTTGGTAGATTCTTTGACAACAAAATAACCCTGTAAAATCAAACTCTTCCAGGAAGA # Right flank : TAAATTATTCTTGAGGGTCTGAAGTCGGTTTGCAGGGTTATGCGTTTTAGAAGACAGTATTGATGGCAAATTGAGGGGCTATTTTTATGCTGGTGTTATGGCCTGCGTAATAAAGGGAGGCCCCGGCAATAATGCCCCAGTTGGCGTTCCAGTTATATTCAAATGCAGGGGCTACCTGCCAGTCGCCTGACGGTGCGCCGGTGCGGTCTGTATAGCTTCCTGCTTTTGTGTGGCCCCACACGCGGGACCCATTGGCCCAGTCGCGCGCGACGTCAATTGCCAGAAGCCATTGGCGGTTAATCCCGTATTCAAGTGAAAATCCGGTTTGTCCGCTCATGCCCGGGCGGCCTTTGCCGCGAAAGCCTGTTGTGGTGCCATAGGTGGAGGTATCGCGCACATCTGCTGCGTTCAGCGCGCGTCTGAACCAGTTCCAGACGCGCAACCTCAGGTTGTGGTTTCCGGGTAGTTTGTAGGTTGACTGGCTCATTAACGCCGTGCGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 76811-77144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOPA01000035.1 Acetobacter indonesiensis strain DmL_051 Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76811 29 100.0 32 ............................. GTTGATTCCTTCAATCCGGGCAAACGGGCCGG 76872 29 100.0 32 ............................. CCATGAGTCGCGGCTGTATGCCATGTCTATCA 76933 29 100.0 32 ............................. GTTATTTATGTGGCGGGCTACCCTGCCATCTA 76994 29 89.7 32 ........C.....T...........T.. ACTGACCCGAGGATTGAGGCGGCTGCGCGGGC 77055 29 93.1 32 ............T....A........... GCGGCGTTTGCTCCTATCCCGACCAAGCCGCA 77116 29 82.8 0 ........C..............A..GAA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGTTCCCTGCACACGCGGGGATGAACCG # Left flank : CGTCGCTACTGCTCATCCCGATAAGGGAGATCTGGGCGTTGTGCGCGGTGCGGGAATCAAAATATCCACACCCGGTTAATCCGATTACGGGCAGCAGCAGGGCAAAAGCCAGTTTCTGTCTTTGCGCGGCACGGCGTACAGAAACACGAAGCACCACGGAAGCAGCACGGGTCACAAAAGGAGCGGTCATGGAGGGCAGGGAAATCCGATTATAAAGAAAGAACACCACAGAAAATACAGAACTGCATAACACAGCCAGCCTGACAGCCAGTACGCCCAGCTACCGCCCGGTGTTTATCTGACCACGAGTGTAGCATTTTATACCGATAAGGGAATGTCACAGCCACAAAAAGCCTGAGCGTATGTGTTGCCAAGCTCCAATTTTTAGAGGATGCGCCCTCTTTCCCCATACGGCGGAAAAGGCTAAAAAAGAGCACAGAAATGCTGGTAGATTCTTTGACAACAAAATAACCCTGTAAAATCAAACTCTTCCAGGAAGA # Right flank : AACCCAGATAGTATGTGTGGGCTCTTGCTGGTGGGGCGTATCTGCCGCACTCTATGGGCACTTTTTGTGTGTAAGGAGCGTGTTATGGTGGCATTTCGTCCAGTTTTTAAGGCTGTGGCTTCTCTTGCTTTTATGGGGGGAATCACATTGGCGGCTTCTCCAATGCCACAGCAGGCGCTTGCGGCAACAATTTTGAAAGTGCCGGCCGTGCCTGCCCCCATGACTGCCAGCACCGCTGCTCCGGGTGTGCTGGATTATGACGGTATCCCGACTGTTGAGCACGCATCCGCCGCCAATGTGGCTGGCCTTATGTCATACTGCTACAGCCATAAACTGGTGACAGATACGACTGTGCGCTCATTAGGGCGTAAGCTGGCCAGCCGCGAGGGCGTGAGCACTAGTCCGGCTTATGCTTGGGGTGGCGTAGGGCGTCTGGAACTGGGTGGCCAGACCATGTTTGATGTAGGTAGCCTGAACCGGGATCAGCGTGCCGCTGTTTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //