Array 1 156865-157992 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAL01000001.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045 strain NBRC 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156865 29 100.0 32 ............................. TATCTGTTCAACGGCACCATTGATTGGCTGTT 156926 29 100.0 32 ............................. CTGCTGGCACGCCCCGGCTACTTTGAGCCGAT 156987 29 100.0 32 ............................. CTCGTGAAGGCGGCGCAAAAGGCGATGGCGAA 157048 29 100.0 32 ............................. TGCGAATAGCGCATGGTCATCTTGATATCGCC 157109 29 100.0 32 ............................. GTCGCGCGGTTGCTGACCCTGGCCGGCGAGGC 157170 29 100.0 32 ............................. CCCCGAATATGACGCAGCACATTCAAACTTGC 157231 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 157292 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 157354 29 100.0 32 ............................. CGCATCGAGAATATTTGCATTCTGACAAAACC 157415 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 157476 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 157537 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 157598 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 157659 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 157720 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 157781 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 157842 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 157903 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 157964 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : CGCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 169104-171140 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAL01000001.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045 strain NBRC 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169104 29 100.0 32 ............................. GCAAGCCAGAAGCCCCGGATTTACTGACCTTG 169165 29 100.0 32 ............................. GTTTATGCGCGTGCGCGCGCGTGTGCGAAAAA 169226 29 100.0 32 ............................. TTCAGCCTGTTCATCGAGACGCTGGGGGTGGA 169287 29 100.0 32 ............................. GCTTCGTCGCGGTCAGCCTCGACCACCTTTAC 169348 29 96.6 27 ............................C CTGTCGCCCGCCTCGCCCGCCCTGGGC 169404 29 100.0 32 ............................. TGAGCTTCGCCCGTTGCGCCAAGGCCATCGAC 169465 29 100.0 32 ............................. CTGTGCGGCTGGAACGTGGAGGCGTGGGATCA 169526 29 100.0 32 ............................. GGACTCGCCTTCAGATCATGATCGAAGAGACC 169587 29 100.0 32 ............................. TCATAGGATGGGCACCAGTAACTGGCGTTAGC 169648 29 100.0 32 ............................. TGGATAGGCTGAGCGGCGATATTCTCCCTGTA 169709 29 100.0 32 ............................. TAATCAAAGACATTGCCAGCCCGTACTACGGC 169770 29 100.0 32 ............................. GCATCAACGATGGCCTTGTCGATGTTGGCTTC 169831 29 100.0 32 ............................. GCTGTTGCTGCCGGGCAGGCGCGGGTGAACGA 169892 29 100.0 32 ............................. GGGCGCCACGCTTCTGCATCGGGCGATCCTTG 169953 29 100.0 32 ............................. CTGCTGGTTGCCGGCGCCGGGCCGGATTACGC 170014 29 100.0 32 ............................. AACTGAATCGCTGGACTTCCCGGCTCCAATTC 170075 29 100.0 32 ............................. TATCTGGAGATTGCCCAGAGACAACTGCAAAT 170136 29 100.0 32 ............................. GCATCTTCGTTACCCTGTACCTGCCGATATGC 170197 29 100.0 32 ............................. ACGCCGATAGCACAGCACAGGCCGCGCCAGAT 170258 29 100.0 32 ............................. GCCATCGCGCTTCATACAAACTTGGTGGAAAA 170319 29 100.0 32 ............................. GGTGATTTATGAGTGAGTGGATTAGCGTAGAA 170380 29 100.0 32 ............................. CACATGCTCGACAGCGCCCTGATCATCCCAAC 170441 29 100.0 32 ............................. GACGGTCACGCAATCATGCACTCAGATGACGC 170502 29 100.0 32 ............................. GTCAATGCCCGCGTGCTGGTGGACTGGTGGCG 170563 29 100.0 32 ............................. CGCTTCCTGCTGGTCGCCCGCCACGTCGAGAA 170624 29 100.0 32 ............................. AACTCCCGGACAGTGCGCGGGAGTGTCATTGC 170685 29 100.0 32 ............................. CCTTCGTGTATCTCACGCTGTCTTTCTTCGGC 170746 29 100.0 32 ............................. ACGGCTGCCGGCTTCAGCGGCAAAAACATTGA 170807 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 170868 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 170929 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 170990 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 171051 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 171112 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : TGGAGGGGGGTGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24907-26156 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAL01000020.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045 strain NBRC 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 24907 29 100.0 32 ............................. CATCCAAGTTACGCATCAGATTCGAGACGCGA 24968 29 100.0 32 ............................. CTATGCAGGGCTGGTGCGATTTCCTTCTTCCA 25029 29 100.0 32 ............................. GTCGCCTTCCTTGAGTGGCTTTTTTGAGCCGA 25090 29 100.0 33 ............................. CGAACGGGCGTCTCAGCGAGATGGTCGCTTGGC 25152 29 100.0 32 ............................. GTTTGTGGCGATCTTCTCAGCTCCCATCATTT 25213 29 100.0 32 ............................. CCCGATCCACCTTACGAAAAGCCTCTGGATGA 25274 29 100.0 32 ............................. TCAGCTTCTCAAAATTAAGGGATATAGGGACC 25335 29 96.6 32 T............................ ACGTTGCCATGAAATCCTTCTCGGTACGTGTG 25396 29 100.0 32 ............................. GCGAAGTAGGCGATCAGCAGTGCGACGATGCC 25457 29 100.0 33 ............................. TACATGCGCAAGGGCAAGTGCCCGGCCTGCGGC 25519 29 100.0 32 ............................. CATGTTTGCGAACTGAACAGCATGCGGTGCCA 25580 29 100.0 32 ............................. GCATACGATGAGAGCGGTGGCGCTGTTTTCGG 25641 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 25702 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 25824 28 75.9 32 ..G..C......-C..TA.....A..... TCCTGTAGCGCACGTTGCGAAACCGCAGCAAC 25884 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 25945 29 100.0 32 ............................. GGCTGTGGGGGTGAGAAATGAGCAAGCGCGAA 26006 29 100.0 32 ............................. CCCATGGATCGAGCATGAGAAACTGCTCGTTC 26067 29 79.3 32 .......T....CTT.....A....A... GGTGTATGAACTGTATTTACGTAACCACGCAG 26128 29 72.4 0 ..G..C......A.TC..A..T......T | ========== ====== ====== ====== ============================= ============================================================================================= ================== 20 29 95.0 35 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTGCTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGAGTCCATATTGGGATCGCAGTCTGCACAAGCCGGCGCTTGTGCCCACCAGTTTGGCTTAACCTTGCAAGTTACCAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : TATCAAGCTGGTCATGCTTCCCCCTGAGAGTACGCTGGATAAACGGTGCCAACCCTACCACTGGGCTGGCTTGCGCCCTGGACTAACGGAAGGTGAGCGCTACCGAGTAGGTCTAGTGCTGGGCGCTCAATGGCGCTCCCTGGCCAAGACTGGGCTCACCCTGAGTGCAGTAGAGGTTCAGGTCCTGGGTATGGCCGTGCTGGCAAACTGGCAAGGTGATGAGGACGAGTTGGAAGCCTAAAGCTCTGCTGCATTCCAGTTCTGGGGCCTTGGGAATTGCAAATGAGCCAGGATTACACACTCCAGCTTGAGCGATCATGAGCATCAGATTCCACTCCCAACCTCCCTCAAGGAGAGCCTATGAAGCAACTTCGAATCTGGCTGATCAAGCGCAAGCTGCGTGCTGCATACCTTTCGTACCGCAACATGCTCGACCGCTCCCATGCTGGCCGGCACATGACCGTACAGCTGCCCAGCGTTGCCGCCCAAAAAGAGCGTTG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 32348-32797 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAL01000022.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045 strain NBRC 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32348 28 92.9 33 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACAC 32408 28 96.4 33 ............A............... TGACCAACTCCGTCATCAAAGGCGAACAGCATC 32468 28 96.4 33 ............A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 32529 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 32589 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 32649 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 32710 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 32770 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43231-46443 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDAL01000022.1 Pseudomonas oleovorans subsp. oleovorans NBRC 13583 = DSM 1045 strain NBRC 13583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43231 28 100.0 32 ............................ TGTTCAAGGCCACCGACTACGCGCTGATTCGC 43291 28 100.0 32 ............................ ATGTATGCCGGTGCGGTTTGCCCGGCCTCCAG 43351 28 100.0 32 ............................ TGCTGGATCTGCCAGACTGACACACTCAGGTG 43411 28 100.0 32 ............................ GCCGCGCCACGAAATCCACATATCCCCAACCG 43471 28 100.0 32 ............................ TGCGCATCAGCGAGGCTGCACGCGAGCTGGGT 43531 28 100.0 32 ............................ AGACATTCGAACAAGGCTGGGCAGCTCGGCCG 43591 28 100.0 32 ............................ TCGATATCGATACGCGGCGCCATGCCCCACCA 43651 28 100.0 33 ............................ GCACTGTCAGAGGTTGACGGCGTGGTATATCAG 43712 28 100.0 32 ............................ TCGAGCTGGGCCTGCAACTGCACCACTGAGGG 43772 28 100.0 32 ............................ AGCCCCAGAGCCAGCACGTAGAGAGTAAAGAC 43832 28 100.0 32 ............................ TAGCATATCAGGCAGGCATCACGCTGCCGATG 43892 28 100.0 32 ............................ TCACACAATAGAAACAACGCGCTGCTCTTGAC 43952 28 100.0 32 ............................ ATGAGTCGCGCCAGGTGTTCGCGCTGGCTGTC 44012 28 100.0 32 ............................ ACAGTGGAGTAAGGCAGGAGCGAGGATGTGTA 44072 28 100.0 32 ............................ TGGGCGCTGGCATCTATGACCGCCTGGTGGAA 44132 28 100.0 32 ............................ CGACCATGAAAGAGCTCGCCGCCGCGGCGGGC 44192 28 100.0 33 ............................ ACGATATGAGCGCTGAGCTGATCGCGCCTCGAC 44253 28 100.0 32 ............................ AGGCTGAACGAAGGGGCGTTGATGGTAAGGTC 44313 28 100.0 32 ............................ AGGTGCTAGCGTGCATCGAGCGGCAGGCGGTG 44373 28 100.0 32 ............................ AAGCCACACGCGGCCGGGCTGCCAGTTCCAGC 44433 28 100.0 32 ............................ ATGGCTGTGGTCGGCATCATCGTGCGCATGCT 44493 28 100.0 32 ............................ AGCGTGTGCTGATAACCGTAGTCGATCCCGTA 44553 28 100.0 32 ............................ ACTTGGCAGGACGAACAATGCCCGAACATCCC 44613 28 100.0 32 ............................ AGATCGGGATACAACTACCGCGACTATACATG 44673 28 100.0 32 ............................ AGTTCGAGTGGGTCTTGCAGGTTGAGCAGCAG 44733 28 100.0 32 ............................ GGGGCTATTATTGAGCGCGGCAGTAATGCTAA 44793 28 100.0 32 ............................ AAGCGCCTCACTGGCCACGGCCTGGGTGGTGT 44853 28 100.0 32 ............................ ATCCGCATGACGTGACCTCGTTCCCGTGATCC 44913 28 100.0 32 ............................ AGCGCCCGAGGCGCGCGAGCTGATTTCTCGCC 44973 28 100.0 33 ............................ TACTGCGTTGACGCCGGGCAGGTTGATATTGGC 45034 28 100.0 32 ............................ AAGCTGCAAACCGCGCGCACTATCGGCGGCGT 45094 28 100.0 32 ............................ TCGCCAGTGCGCTCGTCGCGGTAGATCTCGGG 45154 28 100.0 32 ............................ AGCTCCGGCAGCGGGTTCGGGTCAGTCCAGAA 45214 28 100.0 32 ............................ TGCCACACGCGGCCGCAGGCGTAGAGCGTGGT 45274 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 45334 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 45394 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 45454 28 100.0 32 ............................ GTCTAAGGCGAAGTCTGGCTCGGGCAGCTCAG 45514 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 45574 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 45635 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 45695 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 45755 28 100.0 32 ............................ TTGGCGATCTGGGCGTTGCAGGTTTTGCAGTT 45815 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 45875 28 100.0 32 ............................ AGGCGATGCCGAGCAGTGGATAGCCTCGGATG 45935 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 45995 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 46055 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 46115 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 46175 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 46235 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 46295 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 46355 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 46415 27 82.1 0 ......................TT.CG- | AA [46436] Deletion [46442] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //