Array 1 41750-44220 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLF01000052.1 Cronobacter sakazakii strain cro214W contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41750 29 100.0 32 ............................. TGATTGCTCGTAGGGCGCTGGGGTGTCGTCAA 41811 29 100.0 32 ............................. CGAGCACTTGCTCAAGCCCCAGCAGCCGGTTT 41872 29 100.0 32 ............................. GGGTTTTGGTGTAATCATTGGCTGTCATTGTG 41933 29 100.0 32 ............................. ACCGCCGCAGAACTCCAGACCGTCAGCGTTTC 41994 29 100.0 32 ............................. CGGGATTTGTGATTGGTGTAGTTTCCAGGTAT 42055 29 100.0 32 ............................. GTTTTTGAACGCAATTTGTCTAGAGTACCCAC 42116 29 100.0 32 ............................. GCCCATCTGGCTGGCAATAAATGCCGGGTTCG 42177 29 100.0 32 ............................. GTCGCGGCGGGTATCGTGGCGGCCACGCCAGT 42238 29 100.0 32 ............................. AGTTTTGACGCTTTCGGGCGCCAGCTGCGTGA 42299 29 100.0 32 ............................. GAACGTTTCAAAACAGGAGGGCGCTATTATGA 42360 29 100.0 32 ............................. GTTAACGCTGACTTCCTGAGCCTTTAGCGGCT 42421 29 100.0 32 ............................. GATTTGCACGGGTTTGATGAATTTTTACCTGT 42482 29 100.0 32 ............................. GCGTCTCGCTTCCTCAGCCTGGCGTTTTTCCT 42543 29 100.0 32 ............................. ACACTGTGGTACTGCGACGGTGGTTGCGTACA 42604 29 100.0 32 ............................. ATTGAATCTCTCCCGATATTCAGAAGGTGTCA 42665 29 100.0 32 ............................. TCACGTGACTCCTCCCTATACGTGACATCGTC 42726 29 100.0 32 ............................. CTTTCTTGTAACCAGAAGTATTACCAAATTGG 42787 29 100.0 33 ............................. GGCACGAGGTGGCGAACGCCATCGGCCTGCGGC 42849 29 100.0 32 ............................. CCTGAGATATTCAGGCTTTCTTTATTGAGGGT 42910 29 100.0 32 ............................. CCCTTGTATAGTCACGTCACGAGCGGACTGAA 42971 29 100.0 32 ............................. CTCGCCGAATAAGGGCCGAAAAATGGCTATTT 43032 29 100.0 32 ............................. GTGAAAAACCAGTGAGCAGCGCCAGTGCTGCT 43093 29 100.0 32 ............................. CGGCTCAGCAGAGACACAATTCAGGTGCAGGC 43154 29 100.0 32 ............................. GAAAATTTGGCGTTTCGTTTTCGGTATCAAAA 43215 29 100.0 32 ............................. CGGATGCCGATAACCCTGGAGCCGTGGCAGCT 43276 29 100.0 32 ............................. CTGTGCAAGACAGGTGCCCTGCATGTCATAGC 43337 29 100.0 32 ............................. TGATGTTCCGTCGCGATATTGAGAAGGTGCGC 43398 29 96.6 32 .C........................... GTCGCGGAGCGTATGCGCATTTATCCCGATCA 43459 29 96.6 32 .C........................... ATCACCCGATAACTATCGACGGGGATATTTTT 43520 29 96.6 32 .C........................... GCCTTTCCGCGCCACGCTCACCCAGAGAAACC 43581 29 96.6 32 .C........................... GGATTCCGATTGTCGGTGTTGGTGCCATCTAC 43642 29 96.6 33 .C........................... GCCGTTTTTCATCATCGTTCGGGTGTGAAAAAT 43704 29 96.6 32 .C........................... ACCCACAGCACGCCGTGTTTTAATGAGCGTTT 43765 29 96.6 32 .C........................... TACTCACGGATACGTTCACGGCAAACAGGCAC 43826 29 93.1 32 .C.........A................. GCGGCATCGTCGGGTGCGCGCCGGATTAAATC 43887 29 89.7 32 .C.........AA................ AATTAACGAATCCATAAGTGCCGCTGCTGGTG 43948 29 89.7 32 .C.C.......A................. GGTGAAAATAGGATACGTTCGCGTTTCGTCGA 44009 29 96.6 32 .C........................... TACGCGGGCGCTTAGTTCTGTTATTGCTGATA 44070 29 96.6 32 ............................T AGCGCGTCGTAGAGTTGGTCGTCTGTGTAGTC 44131 29 100.0 32 ............................. TTTATTGAGTCAATGTATCGCGTCTATGAAGA 44192 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCAATCAGTACAAAGGGTTACTTTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCAGCCGTAATAAACCGCTCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18467-19411 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLF01000069.1 Cronobacter sakazakii strain cro214W contig69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18467 29 100.0 32 ............................. TCGCGTTATATACCGACGAGGGGGCGTATATT 18528 29 100.0 32 ............................. GTAACAGAAAGCGAAAGATCGTCGCCGTCAGC 18589 29 100.0 32 ............................. GCGGTGCCGCATGAAAGAGCGCCCGATAATTT 18650 29 100.0 32 ............................. CCCCGCATTAGCGAGGCCGATATTGCTTTGTT 18711 29 100.0 32 ............................. CCGGTTTTTGCTTTTGCTGCCATTTTTCGTAT 18772 29 100.0 32 ............................. TTCACGGTGCTATCAAATTGGTAATCTTGCAA 18833 29 100.0 32 ............................. CCAGCAGGAATTAATTATTAATTCCCGTCGCA 18894 29 100.0 32 ............................. TGTTCTGCTCATATGTAACACTGGACAGCATT 18955 29 100.0 32 ............................. TGGACAACGCCTACCTGATGTACATGGCCGCG 19016 29 100.0 33 ............................. CCAGTACCGACCGAGCCCACGCTAACGGCAGAG 19078 29 100.0 32 ............................. ACCCGACGAATCAGGTGCAGCGGCATAGCCAG 19139 29 100.0 32 ............................. CGAAAATATGACCGCAACCGCTGAATTAGCCA 19200 29 100.0 32 ............................. ATTGGGCGTTAACGTCGCTAAATTATCCTGAG 19261 29 96.6 32 ............................A ACTGAATTATCGAACTTTCTGGCCCGTTTTCA 19322 29 96.6 32 ........G.................... CTTGCCTGGCAGGGCAGATTGATATCATAAGC 19383 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTTTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATTCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58470-58617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLF01000014.1 Cronobacter sakazakii strain cro214W contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58470 28 100.0 32 ............................ TTGATGCCGTTGAGTTGATAGAGTTTCTGCGT 58530 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 58590 28 85.7 0 .....................CGGA... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAGAATGCCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCTGAAGAAACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //