Array 1 11-787 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHZQ01000605.1 Singulisphaera acidiphila DSM 18658 Scaffold67_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 100.0 38 ..................................... TCTCGCCCGTCCCGAACGACTCCGTTCCGTGGTCACAC 86 37 100.0 36 ..................................... GGGCTTGCCGTTCTGGCCGTGGGCCGGGTTGTTCCG 159 37 100.0 37 ..................................... CCCACCGCACATGGTCAACGTGTATACCGGGTCCGAT 233 37 100.0 37 ..................................... TTCCGGTGCCCTGCCTGGTCTTTTGACCGGTAATCGG 307 37 100.0 36 ..................................... GTCGGTCCCCTACTTCGTACCCGACGAATCAGCCCC 380 37 100.0 37 ..................................... TGCGAATTCCCCATAAATTTGTAGTCAAATTAGTTGA 454 37 100.0 39 ..................................... CATCCGGACAGCGGAGATCGGCACGCGGGCCGCCTCGAG 530 37 100.0 36 ..................................... CACGATCTGGGCCGTCGGGACGAGTGTGCGATTCAC 603 37 100.0 39 ..................................... CGGTAGAGAGTCTGTGGGCGTCGAGTTTCGACCGGCCAA 679 37 100.0 35 ..................................... TCGTCCTCGACCCACACAGCGACGTCACTCCCGCC 751 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 100.0 37 GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Left flank : ACGATCGGCGG # Right flank : TGATCCCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.90,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 72510-72267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621487.1 Singulisphaera acidiphila DSM 18658 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 72509 37 97.3 27 ....................................T CTGAGGAACCTGAGCAGTCGTGAGAAT 72445 37 97.3 34 A.................................... GGCGTCAGTGTGAAAGCACGGCTCGCAATACCTT 72374 37 100.0 34 ..................................... CCATTCAGTGGCGACTGGACAAACATCGCGAGTA 72303 37 91.9 0 ....G..C...........T................. | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 96.6 32 GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Left flank : TGTGATGCCGAAGGCGTTGAGCGCATTCGGAATGGCTTGGGGACCAACCATGGCGGATGAGTCACAACGAAAGCCAGTCAAAATCGGCGTCAAGGAAGGGGGAGGGCCGCCTCCGGGATACAAGTGGAACGTCGAGATCCTTGAGCAAGCTTTTGCTGAAGCGATGGGGTTTCTCAATGCCGACCAGTATTGCCACCTCGCCTCCCAATTTCGCGAGTTAGCCGGTCAGGATGAAGCCAGCCAGAGCCAAACGGTTGACGTCCGGCCCATCGAGGATTTTTACGAACTCCGTGACAAGGGAGGCATCCTTAGAAGGATGAATACACGCATTTTTTTCTTCATTCACAAGAAAATGCGAACAATTGTCATTTTAGGCGCCATCAAGAAAGAGAACGATGGTGCCACTCCCATGGGAGACAAAATCACGATGCGACGGCGAAAACGACTCTATTTGCAGGCCGACTCCCGTTGAGGCGCAACTTGCCGACATCGAAGGAGCT # Right flank : CGATGAATGAGACTCTTTCATCGAGGCGATGCCATGTTGACCGAAAAAATCGGCGAGACTTACAGCGAGCTGCCTGAAGCTGTGAAGCCGGCGCTCCTGGCGCTGTCGATCCTGATCGACCGGATCGGATCGCTGCCGAAGGCCGACCGCGACGACCTCTTCGAGTTACTGCAGGAATGGCAGAAGGCGGAGACCCCTGAGGATCAGCGGAGTGTTCAGCGGGCCATGGAGGAGATCTTGGCCCAGGTCCCGGTCACGACGAGGCCATTGCCGTTGAATGACTCGGCGGCAATGTCGCCAAGCTCGAAGACATGGGCCGAGCACGTCGGGAAAGCGATCCGCAAACTGCGGTGTGACTTGGGTTGGACTCAGAAGCAGTTGGCCGAGAAGGCTGGGCTTCCTCAGAGTCACGTCAGCCGCCTGGAGAACGCGGAGTACACCGCGACAAACTTGACCCTGACGAAAATTGCAACAGCCTTGGGGGTCGAGGTGAGAGCGAT # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:-0.04, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84653-80884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621487.1 Singulisphaera acidiphila DSM 18658 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 84652 37 100.0 38 ..................................... AAGATCCTCGGGACCAGGTGATAGCTACTTGCAATCCC 84577 37 100.0 37 ..................................... CCAGGCCTGGACCGGTCCCTTGCGGCTCGGGATCGCC 84503 37 100.0 36 ..................................... GTCGACTTCGACCAGCGTGCGAAGGGCGATATCGCC 84430 37 100.0 36 ..................................... TGAGAACGCACGAGTTCGCCGAGATCGAGGACGAAA 84357 37 100.0 35 ..................................... ATCAGTTGAGCTCCGGGTTGGCATCGGCCTGGTCG 84285 37 100.0 37 ..................................... CATTACGGCAGGCTGCAACCGCACGCTGCTCCGAATC 84211 37 100.0 38 ..................................... GATCGGCCTGTCACGCGAAGCACTGGTCGCTCGCTGAC 84136 37 100.0 36 ..................................... ATGGTCAGGCCGTGACAGTAGTACAGCCTGACGACA 84063 37 100.0 35 ..................................... GTTAACCCTATAACGACGTTATAGCCGTCGTCTTG 83991 37 100.0 35 ..................................... GTAAATCTCCAGATCTTGTTAACAGGATAATCGCC 83919 37 100.0 36 ..................................... TTGACCATCCCGATCCGTGCCAACCTCGACTCCGGC 83846 37 100.0 35 ..................................... CACAAGCCCCGCAAACCTGTCCCGGAGGTGTCTGT 83774 37 100.0 36 ..................................... TGCACCCGCTTGGTCAGCTCGGGGATCGAGTCCCCG 83701 37 100.0 35 ..................................... GGCGCTTGGCATGCCAAGCTGGGTGATGCCGAGAA 83629 37 100.0 37 ..................................... GCAGCCCTGAACCAAGTAGCGGTCACCCTGGAGCGAC 83555 37 100.0 37 ..................................... CACACGTACGCCGGCCTGAGTCAGTTCCTCTTCTCCT 83481 37 100.0 38 ..................................... GCGTCTTCACGCGCGGCCAACGGCTTGCCGACCAACTC 83406 37 100.0 35 ..................................... TAGTTCTTCTCGAGCCAGGTCTTGTCAGCCAGGCC 83334 37 100.0 36 ..................................... GCCACAACTCGGCCAACGTCGCTGCCTGGCCGCATC 83261 37 100.0 38 ..................................... TTTCCTGGTTTGAGCAGGTTTCGACATGGACCCTGGAA 83186 37 100.0 36 ..................................... ACATCGCTCTGCTACGACGAGTGGCAATACGCGGTC 83113 37 100.0 37 ..................................... AATGTGCATCGCATCCGCCTTCAGTGAGAGGAGCAGG 83039 37 100.0 37 ..................................... GACTTCGATCTCGATGTTCACACCGTAGAACTTTCCC 82965 37 100.0 36 ..................................... TGATTACGCCAAGAAGACGGCAACTCTCAACCTGAT 82892 37 100.0 37 ..................................... GGGGGACTCGATGGGGTCGAGGACTCTTCCAGCGGCG 82818 37 100.0 37 ..................................... GCCGGCTGCTGCTGTCCTCCAGATTTTTCCCAGCCTC 82744 37 100.0 34 ..................................... ATTTCGAATATTGTGGGCCGGATCCTCGGCCAGT 82673 37 100.0 39 ..................................... TCGGCGATGTAAGCCTCGGCGTTCTGCTGCACCTTTCCG 82597 37 100.0 35 ..................................... GTCGAAGCCTTTTAGAACTCTCTTCTCCAGATCGG 82525 37 100.0 34 ..................................... ATTGTGCGTCCGTTGAGGTAGCCGGCTTGAGCTT 82454 37 100.0 36 ..................................... CGTTCCATGCGGTATATACAGCCGCGCCCGACGCGA 82381 37 100.0 35 ..................................... TCGAGGATCCCCGGGTTGTGGTCCGGCGAATTGTT 82309 37 100.0 35 ..................................... AAGTCACGCCGGTCGATCTGGACGGCCAGGTCTCG 82237 37 100.0 38 ..................................... CGCTCCACTGACACTCTGACCCGCAAAGGGATGGCGTG 82162 37 100.0 39 ..................................... CTGTGCAAAATGTGGTTGTTGCCGCGTTTGTGACGCCGT 82086 37 100.0 34 ..................................... GGTATACGAAACCGTTGTTTGGAGCCGAAACGGC 82015 37 100.0 36 ..................................... CTCCACACCAGCGGACAGTGGATTGCGTCGGAGCTT 81942 37 100.0 36 ..................................... GCTATCCCGAGGGCCTTTTTGAAATCGTCCAAGTGA 81869 37 100.0 36 ..................................... TTGCGTAGCCTTTTTCAGGGATGTCACGGCAGGAGC 81796 37 100.0 36 ..................................... GTGACGACAACCAACCAGGCCACGCGAGCATAAAAG 81723 37 97.3 38 ........................A............ AACCCAGCCGGGGATTACTCCGTCCACCGAGGTGTGAC 81648 37 100.0 34 ..................................... TTGTTTGCCGGATCGAGGGTCCATTTCGGGTCCT 81577 37 100.0 36 ..................................... AATTGAGCGGCCTCTTCCGGCTCCTCCGCGAGGCTG 81504 37 100.0 36 ..................................... ACTCTATTCCGACTCGGCCAGGACGCAACGTTGAGC 81431 37 100.0 35 ..................................... CTTTGTTGCTGAGCTTTTCGGATGCCTGTGCAGAC 81359 37 100.0 37 ..................................... GTGAGGATATTTCCGGAGATCCGCAGATTCTCGGTCA 81285 37 100.0 36 ..................................... GTCGACATGCCAACTTTACAGGCCATGCATTACTCT 81212 37 100.0 35 ..................................... CAGTAGAGTTTCTTGCCCGCAGCAGCGGTGACGTC 81140 37 94.6 36 .................A......A............ TTGTGCAAGTCGGGATCGTTGGTGTCGATGCCCACC 81067 37 94.6 38 .......T.........A................... ACGATCACGTACGCTGGCCAGGAGCCCAAGCCGTGAAC 80992 37 97.3 35 A.................................... GCATTCTCGCCCCGGTCGGTCGGCTCAACTCCAAA 80920 37 89.2 0 ............T....A...............G..G | ========== ====== ====== ====== ===================================== ======================================= ================== 52 37 99.5 36 GTCTTCCACGGCCTCCGGGCCGTGGCCCCATTGAAGC # Left flank : CACACGTGTCCCAATGACCTCTCATTGGTTCGGAAATCCTTGACGTGGATCGCGGGCGGAGAAGATACTCCATGACGTGACGGCGAGGACGAATCTTCGCCCAGGATCGGAGGGAACCCGCGAAGCCCCGTCGTCGTCCATCCGGCCCCGGCGAACCTCAGCCGCATCGACTCACGCCTCATGGGTGCCTCAGCGTCCGGCCACACCTGGGGAACGACCACCCCAAGGGCCCCAGCGCAGTCCTTTTGGCAAAGCCGACAGCCGCGAGCACGTGGGTCATGAAATCGGCCCCTGCGCACCAATCAGCGTCAAGCTCTTTGACAATCAGGAGTTGGATCAAATATCACCGCCAACCCCCTCTCGCGTGCCCGAAACGGTTTCACCCAACGCATTTCGGGCAACGCGACTTATCAACACGCCCGAGTGATCGAGCCATTCGAAGCCACCTCTCGCGGGATCGTGGTTAACCCCCTCTCCCCCAAGAGGATCGATCGCCGGCC # Right flank : CGGAAAAGGGGAGCAAGAGCCGCCCGAGTGGGGATCATCAATCCATCGGCTCCTGCCCCTTTTCCGTTTCGTTATTGATCGGCTTGCGACAAGCTCAAAGCGTAGCGCCCGAACAAGAATCGCCATTTTTCATATAATGATTACACAATTAAATGATCGCTCGATTCGCCGTCGTCATTCTTGCGTCGCAATGGATCGCTTGCCTATGCGCCTCGGCGCAAAGCCACTTGGAACCCGAGAACGGGATCCTCAACGCAACCGACTCGACGTGGAACTCTTCGAAGAGAATTCGTGAGGTACTGCTCAAAGAGGCGACGTATTATCATCTGGCGCGCATGGTCTGTCTCCCCTCATTCGACGAGCCGGAGTGGGTCGTGACGGTCGTCCGACAGGATGGAGAGGAACTCGATGCCCCTCATACCTACTTCGTGGAATACGTGGGCGCGGAAACGAAGCTTTTTCTTGCGAAAGGCGCTCAGGACGTCCAGGTGAAGCGGTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCCTCCGGGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.50,-17.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 96883-93624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621487.1 Singulisphaera acidiphila DSM 18658 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 96882 37 100.0 36 ..................................... TGATCCCTTGGGGACCGCGATTTGGATTGGGGCTGT 96809 37 100.0 37 ..................................... ACTTCCTGTTCGCGCAAACACTCCAGCACGATCGGCG 96735 37 100.0 36 ..................................... ATAGCTGACCGCGTAGTACCGACCGATCTCGGGGTC 96662 37 100.0 36 ..................................... TAGTCGGTGTGCCGTTCGCCCGGCGTCGGCATCCAG 96589 37 100.0 38 ..................................... TCGAGGAGTTTCTTAAAGCCCTCGGAGGTGTCGGCAAC 96514 37 100.0 36 ..................................... AAGTTGTACTCCGAAATTCTCAACGACCGGAAGGTT 96441 37 100.0 35 ..................................... AGTTCGCGGCCGTCAAGCGCGGCTCTAATCGCAAT 96369 37 100.0 37 ..................................... ATTCCGCAGCCGCAGTCACCGAATTCCATCTCGGATC 96295 37 100.0 36 ..................................... CTTGCCCCTTGTCGATGTAAGACCGGGCTAGTCCTT 96222 37 100.0 38 ..................................... GGCATAGCTCTGCATCTGCTTGGCCTTGGACGGATCAA 96147 37 100.0 36 ..................................... GAGCGCTGCAGCTACCTGTTCGCCTAGGGTTTTTCC 96074 37 100.0 37 ..................................... TACATTTTAACATTCTAAGAATCCTTGGGGGTTTCTC 96000 37 100.0 36 ..................................... TCCCATGATTACTTGATTGTTAACATCCATCCCCCA 95927 37 100.0 36 ..................................... CGATCACAGCCGCTTCGCGACTGCCTCGATCGTCCC 95854 37 100.0 35 ..................................... CCGAACTGGCCGGCGTCGACGACCACGGACGGCAG 95782 37 100.0 36 ..................................... GCTTCCATGGCCGCCCGCGTTCGAGCCAGCTCGCGG 95709 37 100.0 36 ..................................... GTCACTCGGAAAGTCACTCGGCCCGCACTTGTTATC 95636 37 100.0 36 ..................................... TCCTCGCTGGTGGCGCCAGCGATCGCGGAGAGCAGG 95563 37 100.0 37 ..................................... CCGCAGGCAGTCAAATTTAGCCTGATTTGAGCCCTTG 95489 37 100.0 35 ..................................... TTCTCTGCCGTCGCTCTAACGCGAGGCTGGATACT 95417 37 100.0 39 ..................................... GATCGAGATTTCGGCCCCGTCCTCTCTCTCCCAAGTGAA 95341 37 100.0 37 ..................................... GGGGAAGTCAGTGACGGTAATCGCGCCACTGTAGGAC 95267 37 100.0 36 ..................................... GGATCTCAGGCGTGAGCGAACTCACGCACGTCGGGC 95194 37 100.0 37 ..................................... AAGCTTGGCCTGGTCCGGTCACCGTGCCCCTGGGCGC 95120 37 100.0 37 ..................................... CGGTGATTGCGAGAGTGTGCGAATTCCGCAAGCCGCT 95046 37 100.0 35 ..................................... TGGTCCGAAGTCGCGTGGTGCCCTGGTCTCGATCC 94974 37 100.0 35 ..................................... CACTCCATTGCCGAGAACGCTTCCTGGACGATAAA 94902 37 100.0 36 ..................................... ACGATCAATGCCGAAGCAGTGAAATCCAGGTCGATC 94829 37 100.0 35 ..................................... TCGCCGTTGACGTAGCATTCGATCGTCTTCTCGAA 94757 37 100.0 34 ..................................... CGCAACAGCTTCCCCGATGTTTCGGGGCGACACC 94686 37 97.3 36 ....................................A ACGGCGATCTCCTCGGCGCTGCGCGGCGAGTTCGAC 94613 37 97.3 36 ....................................A ATCTCTTCTGCCCTCTTCGTTTGGCCCCGTGGCACG 94540 37 97.3 36 ....................................A CGGCTCGACGATCGGCCGGGGATTGGGATCCATTGC 94467 37 97.3 37 ....................................A CTCATCATCACAGGTGATGAGGTCTTGTTTAAACTGA 94393 37 97.3 37 ....................................A ACTTGGGGTCAATGAGAAGATCCCCGAGGGCACTGGG 94319 37 100.0 35 ..................................... CCAGCTTGCTTGTTGACACTGCGGCCGTGCCGGCC 94247 37 100.0 36 ..................................... GAGGCCCTCCTTGATCGAGTGAACCCAGGACACCAT 94174 37 100.0 37 ..................................... GCCATTCACCGTATAGGCTGTTGAGCCATCAGCGAAT 94100 37 100.0 37 ..................................... TACACCCGGATTCGCCATGTCGACCTGATTTCGACAA 94026 37 100.0 36 ..................................... TCTTATCTTATTGCGTTATTACAACTACATAATGAT 93953 37 97.3 36 A.................................... GCCGGTGAAGTCGGTTCGGGTCGACGGCGCTGTTGG 93880 37 100.0 36 ..................................... GGAGGGCCGCAGGGTAAGTGCCCAGGATCGAAGCAG 93807 37 100.0 36 ..................................... TGTCGCCTCGCTGATCGCAATCGCGTCAGCCCCGAG 93734 37 100.0 37 ..................................... CAATATTCGAGCCATTACAAGAGCCTCCTTTGCGGAC 93660 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 45 37 99.6 36 GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Left flank : ATCCCTTGGGGACCGCGATTTGGATTGGGGCTGTGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCACTTCCTGTTCGCGCAAACACTCCAGCACGATCGGCGGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCTCTCGCCCGTCCCGAACGACTCCGTTCCGTGGTCACACGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCGGGCTTGCCGTTCTGGCCGTGGGCCGGGTTGTTCCGGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCCCCACCGCACATGGTCAACGTGTATACCGGGTCCGATGTCTTCCACGGCTTCCGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTAGATCCAAGGCTTCACGTGCGTGGCGGCCGTCGGAGTCTTCCACGGCCTCCGATCTAATACGCACATAAAAACATAATACATTACAATAAATTCACTATCACCTATTTCTAATGACAATCTGCGTCTGTTGGCCGTCTTGTCGTGGGGTGGCCCACTCGCTGGCGAGAACGCTCGCCAGGGGCATGACTGCTTTTGCCAGCCCCGAGGAACGCTGACGGAACAACTTCCTCATTTCCTGGGGGGATGGGTGGTCCGATTTCGGGAAATCGTTTCTTTGGCGTTCCAAGGGGCGACCGTTCTTAGCCAAGGGCGAAACCACTGAAAATTAACATAATCTCAAATTTTCATGAATTGCAGCCCCGAAGGGGCGACCGTTTCTAGCCAGGGGTGAAACCCCTGGAAACAGGATGAACTCAAATTAGTATGAATTGCAGCCCCGAAGGGGCGACCGTTAAAAGCGTTAGGCTCATTCAGATGGTCGCCCCTTCGGGGCTGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 98753-97090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621487.1 Singulisphaera acidiphila DSM 18658 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 98752 37 100.0 35 ..................................... GTGGCGTCTGGGCTGCAAACCATCGAGAACGCCGC 98680 37 100.0 35 ..................................... CTTTGCGGCCTCGGTGGCGTCCCAGGTGGCGTCCC 98608 37 100.0 36 ..................................... TTCGCTACCTTGTTAGGGAAATAGATTCGCCCGCTC 98535 37 100.0 36 ..................................... ACCCTGGGGAAAGCCGGTCCTGCCACTACTGTCCCG 98462 37 100.0 36 ..................................... AACCTGGTATGTCGAACCGGCCACATAGCCGTTGGC 98389 37 100.0 41 ..................................... GCCATCGGTCGTCACCACAATGCGCCCCTCCGCGACCTGGC 98311 37 100.0 37 ..................................... CCGAAGGTGCTGCCCGGCAGGAACTGCTCGCCGAGGC 98237 37 100.0 37 ..................................... ATGTGGCCGCCGATTCCGAGCGACCTCATCCGGTGAA 98163 37 100.0 39 ..................................... GGGGTTGCTGTTCTCTTGTTCCCTTCCGGGCCCACCCGG 98087 37 100.0 35 ..................................... GAAGGGGACGCCGGAACCCCTTCGGGAACCAACAC 98015 37 100.0 37 ..................................... TCGGGAGGCGCAGGATCAGGAGCGGCCGGCAAGGCGA 97941 37 100.0 36 ..................................... TTGCTCGTGCAAGTGTCGTCACCTTCGTCCCAGTCC 97868 37 100.0 37 ..................................... CCTCAGTGTCGAACACCCCGACCACGGCCTCGGGGGT 97794 37 100.0 36 ..................................... AAAGGCCGACCTCGCCCTTGCCGCAAGTACTGCGGG 97721 37 100.0 40 ..................................... GTCTCTCGTGTCGCCAGTCCGTTGCTCATGACGCCTTCGC 97644 37 100.0 37 ..................................... TCGGCATCCCGGCGGCGACGTGCATCCCGGCCGCGAC 97570 37 100.0 37 ..................................... AGAGACCTGCCCAAGCCGGGCGATTTCAGCAAGAGTA 97496 37 100.0 38 ..................................... ACTAAATCGGGCGATCATGTCTTACGACGGCTCATCAA 97421 37 100.0 36 ..................................... TGATCCCTTGGGGACCGCGATTTGGATTGGGGCTGT 97348 37 100.0 37 ..................................... ACTTCCTGTTCGCGCAAACACTCCAGCACGATCGGCG 97274 37 100.0 38 ..................................... TCTCGCCCGTCCCGAACGACTCCGTTCCGTGGTCACAC 97199 37 100.0 36 ..................................... GGGCTTGCCGTTCTGGCCGTGGGCCGGGTTGTTCCG 97126 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 100.0 37 GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Left flank : GTCACGCGTGCCCCAATCACCTCTCATTGATCCGGAAAACCTTGACGTGGGTCACGGGCGGAGAAGATACTCCTTCGTGACGGCAAGGACGAATCTTCGACCAGGATCGGAGGGGGGAGAAGCAAAGCCCGGCCACCATCCGGCCAGCCTCGGCGAACCTCAGTCGCATCGACTCACGACTCATGGGTGCCTCAGCGTCTGGCCGCACCTGGGAGCGCCCCCCAAGGGCCCCAGCGCAGTCCTTATTTGCAAGGCCGACAGCCGCGAGCACATGGGTCATGAAATCGGCCCCTTCGCACCAATCAGCGTCAAGCTCTTTGACAATCAGGAGTTAGATCAAAAATCACCGTCAACCCCCTCTCGCGTGCCCGAAACCGGTTCCCCAAAAGCCGTTCGGGCAACGTGACTTATCAACATGCCCGAGTGATCGAGCCATTCGAAGCCACCTCTCGCGGGATCGTGGTTAACCCCCTTTCCCCCAAGAGGATCGATCGCCGGCC # Right flank : CCCACCGCACATGGTCAACGTGTATACCGGGTCCGATGTCTTCCACGGCTTCCGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCTGATCCCTTGGGGACCGCGATTTGGATTGGGGCTGTGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCACTTCCTGTTCGCGCAAACACTCCAGCACGATCGGCGGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCATAGCTGACCGCGTAGTACCGACCGATCTCGGGGTCGTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGCTAGTCGGTGTGCCGTTCGCCCGGCGTCGGCATCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 123604-119266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621487.1 Singulisphaera acidiphila DSM 18658 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 123603 37 100.0 35 ..................................... GAGAATGAGCGGCTGCGGCTTGCTGGCGGCGACAT 123531 37 100.0 34 ..................................... ATGAGAGGCGAGCGGAATTGGACGCTTGCCTCGG 123460 37 100.0 35 ..................................... ATGTGTTGTGCGGCCGGCATCAGCCTGCGTTTCAA 123388 37 100.0 37 ..................................... GCGGCCTTTGCTGTCTTATTGAACAGTATCGCCGCAA 123314 37 100.0 35 ..................................... GTCCCCTATTATTGTATTTGTGTTCACATCCAGAA 123242 37 100.0 36 ..................................... GACCCACCGCGCACTGTCGTCCACGAGCAGGCCCAG 123169 37 100.0 37 ..................................... GACCAACGATCATGGCTACCCAACACTCCGAGCTCTT 123095 37 100.0 37 ..................................... GACACCGAGGATGGGCAAAGCCGCGGACTCCCACCCG 123021 37 100.0 35 ..................................... CAGTCTTCGCGGCTTTGGCGTGTCCACCCGCCTTG 122949 37 100.0 36 ..................................... TCGCCTCGCGCCGATTCCACCGCTGTGAAGCTATTC 122876 37 100.0 38 ..................................... TTGAGGGAATAAGTGATTATGTTCCGCAATGGACCATA 122801 37 100.0 38 ..................................... CCGTCTACGGAACGAGCGGAATTCCCGCACCCGTGGTT 122726 37 100.0 35 ..................................... GCCGCCCGATTCTTCGATGAGGGCGAAAATATCTC 122654 37 100.0 37 ..................................... GCGCTCTTGCCGAGGAGAATTTCCAGTCCAGCGACGC 122580 37 100.0 35 ..................................... TGCGATTTGATGGTCGACCAGGGCGATCATGTTGG 122508 37 100.0 37 ..................................... TCGGTAATCGATGCGATATCCGCCTCGGCTTCATCCA 122434 37 100.0 36 ..................................... GTTTCCGTGCGTCGCGACCGCCCCGGGCGTGAACGT 122361 37 100.0 37 ..................................... CACAACACCAGCGACGTAATTTGGCCTGCCCGACCTC 122287 37 100.0 35 ..................................... TTTTAACCCCTGCTCGACCAGGGACTTGATTTCGT 122215 37 100.0 36 ..................................... AGCCCGAATTCCTTGGCCAATGTTTGCTGAGCTTCG 122142 37 100.0 36 ..................................... CGGTCGCTGAATCGCTGCAAGAGGACCCCTCGCAGG 122069 37 100.0 37 ..................................... GCTGGCAAGGCCGGCAATTTACGCGCTCGCTCGATAC 121995 37 100.0 38 ..................................... CTGAGTGAAGATGCCGCGGTCGGTTGATCCCTACTGGA 121920 37 78.4 18 .......................TT..TT.CC.TT.. CCCCCAGTCGTGAGGACG GT [121891] Deletion [121866] 121863 37 100.0 38 ..................................... CTGAGTGAAGATGCCGCGGTCGGTTGATCCCTACTGGA 121788 37 100.0 35 ..................................... CGTCAGGGTGTGTCGAAGTCGGCGTTCACCAGGTC 121716 37 100.0 36 ..................................... ACCGACCAGGGGAGCCCGCGCTTCGCGTTCAGGATC 121643 37 100.0 35 ..................................... CTCGGCTTCCGTGATCGGCTCGGCTGCCGTCGGCG 121571 37 100.0 36 ..................................... TCTCGTCATTTCGAGAGGCACGCCTTCAACGCTCTG 121498 37 100.0 38 ..................................... ACGCAGATGTGGCCGCTTGCGCGACCACTCCCGGGCGA 121423 37 100.0 36 ..................................... TTCCGTCTGGTGCCCCATCCAGGCATCAATAATCCG 121350 37 100.0 35 ..................................... TCATCCAGTCTTCCGTGAAGGCCCAAGTCAAGGCA 121278 37 100.0 35 ..................................... ACGGGTGGAGACACTCTGACGTTCAGCCGGAAGGA 121206 37 100.0 37 ..................................... TACGGGAGTTGGATTCTGCGGCCACTACCGGCCTCAA 121132 37 100.0 36 ..................................... GCGTCAACTCGATAATCTTACCCGTCCGAATCTCGC 121059 37 100.0 38 ..................................... GTCTCCGAAATCTGGCTTAAATCTAGCTAGTGAATCAG 120984 37 100.0 35 ..................................... TCGTTCGTGCTCGAGGCCGGTTTCGAGCCGAAGGC 120912 37 100.0 37 ..................................... GGCGCTTACTCCGGCCTCATCATCACCGGCAACGTGC 120838 37 100.0 38 ..................................... GATAGCGCGAGCGTGCAGGATAATCTCACGCCTGGCCA 120763 37 100.0 37 ..................................... AATCAACGGCAACACCCTGACCGTCCAAGCCAATTTC 120689 37 100.0 38 ..................................... CCGGTTGCGATCGCGGCCCGAAGTGCCAGCGTGTCATC 120614 37 100.0 36 ..................................... GCGGCGCGGGCCGACTCGTTATCCGCGATCTGCTGT 120541 37 100.0 37 ..................................... GCAACATGGGGTCGATGCCCAACCACTTGGACGACTC 120467 37 100.0 36 ..................................... ACCGCCATCGAGAGCCATATCCCGCCGACCCATACC 120394 37 100.0 36 ..................................... TCCATCTCGCCACGCCAGTTAACCCAAGGCCCAGAC 120321 37 100.0 35 ..................................... TTCCCGACTAATTTCCCAGTCTTTTGCGAACCCGT 120249 37 100.0 36 ..................................... CATCTGGCCGGCGACGCGCGATCGACCTGCTACTTG 120176 37 100.0 36 ..................................... TTCTTGGGTCGGTGGATACTTTCCGCCCATCATCAT 120103 37 100.0 35 ..................................... GCGTAAGGATCAGAAATCGGGATTCTCAGACTGGT 120031 37 100.0 37 ..................................... GACCCCGGCAGGTGTAACCTCGGCCGTCCAATGCTCC 119957 37 100.0 36 ..................................... TTCGGCCGCCTTGTCTCGCCATGCCGCGAACCCCTC 119884 37 100.0 36 ..................................... GATGTAATGCTTCGTGTGAGCGTCCACGGTGTGGAC 119811 37 100.0 37 ..................................... GCCGGGCATGATGCGTTTAACTAATCGCTTAAGCTTT 119737 37 100.0 36 ..................................... ATTTCCTTGCGGAACGCGTCGATCGACCGTTGGAGC 119664 37 100.0 35 ..................................... GTTCTCAGCTGCTTCTTGCGGTCCTTAGCGGCCTG 119592 37 100.0 36 ..................................... ATAAACTCGCGTGCAAATGTTTTTGTGGCGTCTCGC 119519 37 100.0 35 ..................................... GCCTGCTGGTGTTGCATGCGATTTTGTGCAGCGAC 119447 37 100.0 36 ..................................... TGGTATCGTTCAGCGTTGGCGGCAACTTCTAAGGCC 119374 37 100.0 36 ..................................... ATGAGGCAGCTTGTCGTCATCAATGACGCACTCCTG 119301 36 91.9 0 ...........................T-....G... | ========== ====== ====== ====== ===================================== ====================================== ================== 60 37 99.5 36 GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Left flank : CGCGGGTCCCATGCGATCGCGAAGGATTCGAAAAACCTTGACGTGGGTCGCGGGCGGAGAAGATACTCCTTACGTGACGGCGGGGACGAATCTTCGCCCAAGATCGGAGGGGGGAGAAGCAAAGCCCGGCCACCATCCAAACCAGCCTCGGCGAACCTCAGTCGCATCGACTCATGTCTCATGGGTGCCTCAGCGTCTGGCCGCACCTGGGGAACGACCACCCCAAGAGCCCCAGCGCAGTCCTTTTGGCAAAGCCGACAGCCGCGAGCACGTGGGTCATGAAATCGGCCACCGCTCACCAATCAGCGCCAAGCTCTTTGACAATCAGGAGTTAGATCAAAAATCACCGCCAACCCCCTCTCGCGTGCCCGAAACCGTTTCCCCCAAAGCCATTCGGGCAACGCGACTTATCAACACCGCCGAGTGATCGAGCCATGCGAAGCCACCTCTCGCGGGATCGTGGTTAACCCCCTCTCCCCCAAGAGGATCGATCGCCGGCC # Right flank : CAAAGCACTCGCACAACTGGCAGGGCGCGAGCCGTGTCTTCCACGGCTCATCGACGCACGCTTGATGGGCCCGGTCGGCGGCGGCATGATGGAAAGAACATGGGGCGGATCACCTCGCCGGGAGTCGTAGCCAATGAGACGCACGCTGACGGCCCTTACTCTCCTGCTCGGCCTACCCCTTTCGGTGGTCGCTTGCTTGTGGGACAGGGACACTCCCGCCGACGAGGCCAAGGGGATGCCCGAAGTCGTCGCCGTGCTCACCGGCAGGTTCGAGAGGAATCCACCGCGGTTCTATGAGATGCGGCTGGCTCGCGTCACCGCCCAGCTTGAGAGCCACCCCGAGGACCTCGCCGGCTACGACGACGCCGGGGTCGCCTGCGACCGCCTGGGACGCGGCGATGAGGCCATCTCCTGGATGGAGAAGAAACAGACGCAACTGGAAAAGCACGAGGACTCGCTCCCGGAGGTGAAGGAACAACGCTATCGGTATCATGCGAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATCCACGGCTTCCGAGCCGTGGCCCCATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 251683-265235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH621485.1 Singulisphaera acidiphila DSM 18658 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 251683 36 100.0 35 .................................... ATTAAGCCTTTTCGGTCTCGAGGAGGCCCCGGCCT 251754 36 100.0 36 .................................... GCCAAGCGGGCCGCGATAGAAATCGAGAGACTGAGA 251826 36 100.0 36 .................................... CCGCCACCCACCCTCTCCTGGCTCGAAGTGTTCGCA 251898 36 100.0 35 .................................... GCCAGGGCTAGGGCAATCGAGCCGGCATCGACCGC 251969 36 100.0 37 .................................... TGCTCGAGTGCGGTGATCGGATCGCGGACCGGTTTGT 252042 36 100.0 37 .................................... AGCTCCTCTGAGTACGTGGCTCGCTGCCTCTCGCAGA 252115 36 100.0 35 .................................... TCCAGTGCGCGACGATGCTGCTCGGGAGTAAGTTC 252186 36 100.0 35 .................................... GTGCGGGACCAGGCTTGGGCCGAGCTCGACGCATT 252257 36 100.0 34 .................................... GAGAGGGTTAGAGGAAATCGCATGAAGCCGAGTC 252327 36 100.0 38 .................................... TCGGGGCTTTCTCGGCCAGAGGGAGAAAGGTGTTCTTT 252401 36 100.0 36 .................................... TCAAGCTGATGCAGGACGCGATCGGCAAGGGAGCCA 252473 36 100.0 35 .................................... CCGTCAGTCGACCTCACTCCGCTCGTCGCCCTCGC 252544 36 100.0 37 .................................... TTCTCGAGGCGATTCAGTCTCTGCTCCAGGAGACGCG 252617 36 100.0 36 .................................... AGCCGTTTCGGCTCACGATTCGGGACCGACCTGGCC 252689 36 100.0 38 .................................... AGGAGATCGTTGGCGTCGACGGTTCGACTCTCAAGCTC 252763 36 100.0 36 .................................... GTACGAACTTCGAACTGGCCGCGAACGATACGTTGC 252835 36 100.0 36 .................................... TGGCGACAATCGGGTTATCCCACAGACCGAAGAGGT 252907 36 100.0 37 .................................... GAGGGCCTCCGACCAACGCCGCGATGGTCGCGCTGGA 252980 36 100.0 36 .................................... CGGCAGTGGCTTTCTCCTCGGAGTCGAACACTCCTT 253052 36 100.0 35 .................................... TATTTGGCGGACGGCTCCGGAACCAACCAGGTCAG 253123 36 100.0 35 .................................... GGATTGGCCACGAACCGCTTGAGGTCGATGCCCAT 253194 36 100.0 36 .................................... AAACCGCCACACTGAGTGCACTGTTCGCCCGAGTCG 253266 36 100.0 36 .................................... AACCCGCAAGGATTACCCGTCAGCTCGCTGATCGGC 253338 36 100.0 36 .................................... AAGTTCTTTGATTTGAAGTCAAAGGCGACGGTGGTG 253410 36 100.0 35 .................................... GCCATCACGTCGAGGACTTCGCCGCAGTCAACGTC 253481 36 100.0 35 .................................... GCGGCCGGAACAGCCTTCGCTTGATGCTTCGGTTT 253552 36 100.0 37 .................................... TGCTCGGCAAAGCCGGGAGGGGCGACCGTGAAGACGT 253625 36 100.0 36 .................................... TTTTCGAGCCGCTCCCTCCAGACGGCCATCCCTACC 253697 36 100.0 36 .................................... GAGCCGCCCCTACCGGGATGCGGGCTACACCGTGGT 253769 36 100.0 35 .................................... TCCCACAACACCACGGTTGCCGTCGGCTCGGTCGG 253840 36 100.0 36 .................................... ATCACTCACTGTGGGGTACGGGGACAATAGTCTCAC 253912 36 100.0 35 .................................... TTGATTGGAACCGAGGGAGTCACCCCGTCGCCGTT 253983 36 100.0 36 .................................... TTCAATTTTTTCTGCCGATCGCGGTCGGCAGCCTGG 254055 36 100.0 36 .................................... AATTTCGGATCGGCCCGCTGTTCGGCCGTGATGATC 254127 36 100.0 35 .................................... CGGCCTGGCAGCGGGACATCGGCTTTGCGATCGCC 254198 36 100.0 34 .................................... CAGCCAGAGCCCCCTTGGCGTCGAACTCGACCGT 254268 36 100.0 36 .................................... TTTGGGCCACGGATGAAAGAGATCGTGCGGGAAGGG 254340 36 100.0 38 .................................... ATTCGGCGGCATGGCATTGCATCCATGCGCCCGGGATC 254414 36 100.0 34 .................................... ATTTTACTGTCAAACAGCGTGGAGTCCCGCTATG 254484 36 100.0 33 .................................... GGTCCGGTCGATCACGACGGTGCGTTCCGCGAT 254553 36 100.0 36 .................................... ATCACCCGGCGGCGAATCATCCGGTCGAATTGCTTG 254625 36 100.0 34 .................................... CGAAGGAATCACATGCTTAATCGGAGACTCCTCT 254695 36 100.0 35 .................................... GGTATGACTCCCGTGGCTTTCCCCTGCGCAATCTG 254766 36 100.0 36 .................................... AGGGCGGTCGTCTGCATTGACGCAGATCAGGCCTTC 254838 36 100.0 34 .................................... AAGCGAGGCAAGACGATCGAGGGGCCTTCGGTTT 254908 36 100.0 35 .................................... ATCGCTCAGGAGTACACCCGTCTGACCGGCATCGA 254979 36 100.0 36 .................................... TGACTCAATGATGACGCCCCGTCCTCCGAGAGGGTG 255051 36 100.0 37 .................................... TCCGTGATCGGCACCATCAGGCCGACCACGACATGCA 255124 36 100.0 37 .................................... TACAGCTACCCAACCAGGCCCCGCGCCGTCGTGACGA 255197 36 100.0 36 .................................... GCTAGCCTTGAAAGAGTCCACGACGAAGAGGAAATC 255269 36 100.0 33 .................................... TTGCTTCTGTGGCCGAGTCCACAACTCTCTTGG 255338 36 100.0 35 .................................... TATGAAGAAGCATAAGGACTCTGCCGGTAACAAAT 255409 36 100.0 34 .................................... TACGAGAACATGAAACCTTTGTGGGTTTGGAAGG 255479 36 100.0 36 .................................... ACGATAGGTTCTCTCAGCTTCAGTGCGGCCCTCGTC 255551 36 100.0 36 .................................... TGGCGAGTGTATGCGTGGAAGTCGCCTTTCAACCTT 255623 36 100.0 37 .................................... AACGCGTACTTTGCCGGTCTCTCGTGGTGCCGCTCGC 255696 36 100.0 38 .................................... TAGTCGAGGATCACGAGCCCGATCTTGTGCCGGAGCGC 255770 36 100.0 36 .................................... ACGGATGACGAGGTCCGCGCGACACTCGCGGGCCGG 255842 36 100.0 36 .................................... ATGGCCGGCACCGAGTGGCCGGTGAATATGATCGGA 255914 36 100.0 37 .................................... ATCTTGGTGGAGTCCATAGAGCATGAAGGCAAGCACC 255987 36 100.0 36 .................................... ACGCCGTGTCCAGCAGGGACAGCAAGATCGCACGGC 256059 36 100.0 39 .................................... ACGGGGCCGGTGATCGGCAGGGTGCGCTCAAGCAACTTC 256134 36 100.0 36 .................................... AGTGAAGATGTGGCTTCGGTGTCTCCCGTCCTGAGC 256206 36 100.0 37 .................................... ATCGCGAAGGGCCTCGGAGTGAAGCCAGAGGAATTGA 256279 36 100.0 36 .................................... AACTGGGCTCCGGTCATCTGGACACCGGTAAGCGGA 256351 36 100.0 35 .................................... GCGAGCATGAGGGCAGACCGGAACGGCAACTACCT 256422 36 100.0 35 .................................... ACCTCGTCCAAGAGAAACTCCTCGACCGGTCCAGG 256493 36 100.0 37 .................................... ACCGGGCGGGCCTTCATCGGGATCGTCGGCACGTATT 256566 36 100.0 36 .................................... CCGAACTTCGCACCGCTGATCCGTTTGGGGGTCACC 256638 36 100.0 34 .................................... GCCCCGCTGAAGGAGACCCGCGTTGCGCCACGGC 256708 36 100.0 36 .................................... GCGTGATACCCTTCCTGGTAGCATCCCCGTGGACAC 256780 36 100.0 34 .................................... GTCGGTCGAAACCGGGTGGGAGGACGGCGAGATG 256850 36 100.0 35 .................................... GTCGGAATGAGGGCGTGAAGGCAGATGAACCAATT 256921 36 100.0 37 .................................... GATCGCCGGGTACCACAACCCGGCGATGAGGCGGGTG 256994 36 100.0 34 .................................... TCACGGTCGCCACGGGCGTCCCTCTCCCCACCAT 257064 36 100.0 36 .................................... CATGATCGCGTCGTCGAAGTGTGGCGGTGCAGTGCG 257136 36 100.0 34 .................................... TCTGCGAAAGGACATTCGGTCTCGCGGCCGTGGA 257206 36 100.0 35 .................................... ACGACTTGGACGTCTACCACTTCTCGTTGCTGGTG 257277 36 100.0 36 .................................... AATTCTGCCTTCCATTGCTCACTGGATTTCTCCAAA 257349 36 100.0 36 .................................... GCGGTCGTGTTCGTGGCTGGGGGAACAATGGTTGAA 257421 36 100.0 36 .................................... CGGGTGTGGACGCGCTTCCGCCGCCGATCAAGTCCT 257493 36 100.0 34 .................................... GCTACGACACAGCCTCAGCCGCCGAACTGTTCTT 257563 36 100.0 37 .................................... CCGCGATGATCGTGCCGGCCGAGTCGCCGAAGATGAT 257636 36 100.0 36 .................................... TCGAAGAAGGTCGCGTGTTTCTGCAAACATGGGTTG 257708 36 100.0 39 .................................... ATCTTCGGCAACTGGAATGATCTAGTGATGGCGTTCTGG 257783 36 100.0 34 .................................... CAGGTCGCCTAGGGACGAACTCCGCAACGGAGTC 257853 36 100.0 35 .................................... CTACGAACAAGGATATCGAGGCCCGCGACGATACC 257924 36 100.0 37 .................................... ATTCCGAAGCGGTTCAGGAAGCCAAAGCGCTGTCTCT 257997 36 100.0 39 .................................... ACGACCAACGCCGAGTTGGCTGACCGCGAGAGTCGTTGG 258072 36 100.0 40 .................................... AACTTGCGGCCCGCCACCGCCAAATCTTCGAGGCGATCGC 258148 36 100.0 35 .................................... CGGCGACCGCCGAAACGACCAGCGCGATGATTATC 258219 36 100.0 35 .................................... GCCTGGTGTTGCTCGCGTTCCCGATCCTCACTCTC 258290 36 100.0 34 .................................... CCGATTCCGGTCCGACCACACACGCGTTCTCCGG 258360 36 100.0 36 .................................... CTTCGTAAGCTGCTCAAGGACCAAGTCCGGATCCGT 258432 36 100.0 38 .................................... TCGGTGTTCGCCGTCGCGGGCGCGTTGCCGTCGTAGAG 258506 36 100.0 36 .................................... TGTCAAAGGCGGACCTGCAGCGGTGCGTCGCCTCGC 258578 36 100.0 36 .................................... ATTCGCTGGTCGACGCCTCGTGACGCGAGGATCGAC 258650 36 100.0 38 .................................... GTTGCCTGACCCTGGGCGGCCGAGATTGGGCCGTCAGG 258724 36 100.0 38 .................................... TTCGAATAAAACGGGCCGGATGGCTCCGGAATGTCGGG 258798 36 100.0 36 .................................... CTGCCCACAGCCCTGGTTATGGCTACGCAAGCACTC 258870 36 100.0 35 .................................... TAGCCCATCCCATCGCGGTAGACTTCGGGAGCTGG 258941 36 100.0 38 .................................... ATGCTGCCCCAAGATTTGCCATGCCTGGTTGGGGCCGT 259015 36 100.0 34 .................................... ACGCGTCGGCTTACACCGTCTCGTCGGGGATCGG 259085 36 100.0 37 .................................... GGGTGCGCATGAGCGAGGTTGCTGGGTGGATCCGTGG 259158 36 100.0 37 .................................... CCTTGACTTACGCTCGCAAGATGTCTGCGAAAGGACA 259231 36 100.0 38 .................................... GACCTCTCGTCGGTCTCGAATGCCCCCAGGCAGCTCGT 259305 36 100.0 36 .................................... AACGTTCTTATTTACGAGCCAATTACCGTTCATGAT 259377 36 100.0 35 .................................... TCAGCCGCTCAGGCGCTCGAAGGAGAGTTTTCCGA 259448 36 100.0 35 .................................... AATTCACGCCAGATTGCCCGGCCTTCCGGTGACGT 259519 36 100.0 36 .................................... AACTCTTCCGCATGTACCAGGACGGCACCCTGAAGG 259591 36 100.0 35 .................................... GAAGACATGGCTTCCCCTGTGGGTAGCTTCGTCCG 259662 36 100.0 38 .................................... AGTTACTCCAGCCCTTGCGGGGACTGCGGCACTACAGG 259736 36 100.0 36 .................................... CTGGCCGGTGGCTGGCCAAACACCCTCATCGGTGAT 259808 36 100.0 35 .................................... GCAAGCGATCTCCTCGAGCCGGCCCGGAGTTGGCC 259879 36 100.0 37 .................................... TCGATCGGCCAGGAGGTGGATAAGCCAGGTCCGACCG 259952 36 100.0 37 .................................... CTCCACCCGATGCCTTGCCCGGTTTGTACCCGCGCAT 260025 36 100.0 36 .................................... TTGTCGCCTAAATTTTGGACGATCAATGACGGCGGT 260097 36 97.2 37 .......T............................ AGCCTCCATCGCCTTGCGGTAGATCCGCGCGGCTTGG 260170 36 100.0 36 .................................... ACGACGACAACGACGGGCCCGACCCGGCCGGTGCCG 260242 36 100.0 34 .................................... GTCGTTGCGCTTTATCCCATCACGGATGGCGTTT 260312 36 100.0 34 .................................... TCGGCAAGATCGTGATAGTCGTTCCGAAGCCGAA 260382 36 100.0 36 .................................... CGGATCACAGAGCAGGCGAAAGACAAGCTGGCGAAG 260454 36 100.0 35 .................................... ACGAACGAACAAGAGAACGAGTTGAACGCAAAAAC 260525 36 100.0 35 .................................... AAGCCGTCGGCGGCCGTCGGCCCAACTTCCTCGGG 260596 36 100.0 34 .................................... ATCGCCCGGGAAATCCAAGCGGAGCCCGCCCGCT 260666 36 100.0 34 .................................... ATCTCGGTTCGGATCGCGACGGTCTGGTGGAGGT 260736 36 100.0 36 .................................... GGTTCGCCGAGCCGGTGAGCCGCGCGTAGAAACCCC 260808 36 100.0 40 .................................... AGGTTCGATGCGCCGGTCGTGATCTGGGTGATTGCGGTGT 260884 36 100.0 36 .................................... AGGTCAAGTCGCGGCAACAATCTGGTCGGACGATGC 260956 36 100.0 37 .................................... AGGTCGGGCACGGGATCGGAATCGAGCATTCACCGCC 261029 36 100.0 37 .................................... AGGGCTTCGGCGGGATTGTCATCCGGCTCGGCAAAAT 261102 36 100.0 35 .................................... CCGGCAAACGTGGATTCGGCCGTCACGGGGACCTC 261173 36 100.0 35 .................................... ACCGTCTGCCCCGGGCCGGTGACGATCACCAGGCT 261244 36 100.0 36 .................................... ACGCATCCAGGCTTGGTGATATCTTCCAGGTCCGGA 261316 36 100.0 36 .................................... GCAACGGCGAGCCAGAGAGAGGGGGAGAGGCCGCCT 261388 36 100.0 36 .................................... GCGGCGCCGAGCTCGAACCACGATTGCGGTTGCGGC 261460 36 100.0 40 .................................... GCGGCATTCTACCGGGACGCCAAGAGCGAGTTGGCCGCGG 261536 36 100.0 35 .................................... AGTCCCGGGCCGGGTCTGAACACCTGATCGGGTGA 261607 36 100.0 36 .................................... CCATCCGTGGCGTCCTGGACGGACCGGGAAACGCCT 261679 36 100.0 37 .................................... CACGTCCTCCTACTCGCCCTGGCCCTGGTGAGCCAGG 261752 36 100.0 36 .................................... CTCCGCAATTCGGCCAGCCTGGTCGACCTCGACGAC 261824 36 100.0 35 .................................... AGCTCGCCGCGATGATCGAACGGCTCAAGGCCGAG 261895 36 100.0 35 .................................... AGCCCGACCATAGATTTCGGATTCAGCCGTCGTAG 261966 36 100.0 36 .................................... AGCGTAAGCTGAAACTTAGAAACCGATGGCGACTAA 262038 36 100.0 34 .................................... ACCGTGTAGCCGTCTCTCGCCTCGGTCGCGTACT 262108 36 100.0 36 .................................... ATCCTGCCCATCGGCCTGCGCGGTGACACCTGTGGG 262180 36 100.0 34 .................................... ATCTCTCCAAGCGGCAAACCGGCATCGCTTGGAT 262250 36 100.0 35 .................................... CTCCCGTCGCGGAACCTGCTTTCCGTCTCCGATTT 262321 36 100.0 37 .................................... CTCCTCAGACGCAGTGTATTGGTCGCTCTCCATCGCT 262394 36 100.0 36 .................................... TTCCTACCTCCATACTCCGCCGACACGAGCCACTGG 262466 36 100.0 34 .................................... AGACGCCGCCGGCCCCACGGATCACGACCCTTTT 262536 36 100.0 35 .................................... GTCAGCATGATCCGGGCTGACCCGGTGCTCAACTC 262607 36 100.0 35 .................................... ACGGCCAAGTCGCCGTAGTCAAAACAGTCGTTTCT 262678 36 100.0 35 .................................... ATATCCCAGTGAAGAACCCCTACGCAACCTCGCTT 262749 36 100.0 38 .................................... TCGGGATAGCCGAGATCGGCCGCCCAATCGAGGATATG 262823 36 100.0 37 .................................... AGCGAGCAGAAAGTAGCGATCGGCACCGTCACGCTGC 262896 36 100.0 37 .................................... TGGCGTTACCAGACCCAACTCTATCCCAGCGTTGCCG 262969 36 100.0 34 .................................... TGAAAGCCGACAAGTCTATCAACAAAGAGTTCAA 263039 36 100.0 36 .................................... ACGGCAAACCTGATCGCGAGGGACCGCGCGTCGTCC 263111 36 100.0 37 .................................... ACATGGGCAAGCACAGCCTGCTCGCATATCAGGTTGT 263184 36 100.0 35 .................................... GATCAGGCATACCTGCTCGCTCGTTCGCTGGAGGT 263255 36 100.0 34 .................................... CAACATGCCAATCCTGGCGCTCTCGCAGCTCAGC 263325 36 100.0 37 .................................... CTTCAGATCCTCGAACCGAGTCAGAGGCCGGTAGGCT 263398 36 100.0 35 .................................... GGCCATCGACCTGGGCGAGGACTTCGCCATTGAAG 263469 36 97.2 34 ......G............................. GAACATGGCTTCGATTATTACACCGCTTCGCAGA 263539 36 100.0 35 .................................... TACGCACGCACGTACACGTGACGCGCACGCACAGG 263610 36 97.2 38 ...................T................ ATGTCGACTGCGCCAATGCCAAGGTCGAGTATCGTGAT 263684 36 97.2 34 .........................A.......... CTTCAATTCTCGATCGAGTCCTCTGGCGAGGATC 263754 36 100.0 36 .................................... GCTGTGCTGCTCGCCAAACCCGCCGCCACTATGGAG 263826 36 100.0 41 .................................... GCTTCCGAAGGTATGACGGAGTCTATGCCAAGTCACGTCTT 263903 36 100.0 36 .................................... TAGCTCTGGGCGTCTTTGTTGACGAAGTTATAGAAG 263975 36 100.0 36 .................................... CAGATATCGTGCTTCCTCCTCAAACTCGTACTATTT 264047 36 100.0 35 .................................... TTCTGGCGGCTGAACTAGGAGTGTCTCCGACACGA 264118 36 100.0 35 .................................... ATCGTGTCGCGAAGCTCGAGCGCGCGTTCCTTCTC 264189 36 100.0 34 .................................... TGCATGCGACCCTGAAGCCAGGCGATGGTGATAA 264259 36 97.2 35 ..................................C. CCCCCACCCGATCCATCGGGTGGGGGGGCAATCCG 264330 36 100.0 37 .................................... TCGATCCCATCTCGACCAAACGCTCCCGTCGCTGCCG 264403 36 100.0 41 .................................... ATGTCCGAGCGGTTCCTTGTCAAGCCCGTCGACCCCAAGGC 264480 36 100.0 37 .................................... CTTCCCCAGAGGGGCAGCTCGCCCGTAAGCAGCTCGA 264553 36 100.0 35 .................................... AAGTGAGGCGAGGCAGGAGATTCAGCGTATCGAAT 264624 36 100.0 37 .................................... GCTTCCGCCCGGCCCCGCCCACCGCGGATAACTTCGG 264697 36 100.0 35 .................................... TTGAAGCCTTGCTCGACCCCTCGCCGGAGTGGAAC 264768 36 100.0 35 .................................... ACCACTAAAAAAAACACAACGCATTCTCATATCAA 264839 36 86.1 36 .CT......AA.......T................. CTTTTTGAGAGGAGCCCGGTGTCGGAGGGGGCTTCC 264911 36 100.0 36 .................................... CCGATCCCCGCGCGGCATTCCGATCTCGCGGGACTC 264983 36 100.0 36 .................................... CTCTTCACGCCGTCCACGCTCATGATTCCTCGTTGG 265055 36 100.0 37 .................................... CGCTCAACCTAGATGGCCACCGGATCTACCGGTCGAT 265128 36 100.0 36 .................................... TGCAACCCGAGATTTGCCTGGGCGCGAACAATTCCC 265200 36 97.2 0 ....T............................... | ========== ====== ====== ====== ==================================== ========================================= ================== 189 36 99.8 36 GTGCCGACCTCTGTGATGCCGCAAGGCGTTGAGCAC # Left flank : CGCCGCGCCGCCAAGGTCCTTGAAGGTTCAGGCCAGCGAATGCAGGAGTCCGTCTTCCGCTGCTGGATGACCCCGAGCCAAATGCACCGGCTTCGGTGGGAGCTCACCCAAGTTCTCGAACCGAACGACGAAGTGCTGCTGATCCCACTCTGCCCCCGCTGCGTCGGAGGCATGGAGACAACCTACTCCGCCCAGAACCACCCTGATTGGCCCGATTCCCCCGAACCCCACAGGATCATCTAACTCCCTGATTCAAGCATCTCCGGCCGTCGTGCCGAGTTCTCACCGCCGATGGACCGATCTCGTTCCCCTTCTTCAACATAGGGCTCTTTGGCAATACGAACGATCCATGATTCACCCGAACCCCGCACCGCCTATCAACTTGCAAACCGTTCTCCCCAGAGTCGGATCCCGTTTTCAAAGCCACCCCCAACTCTCCAAGCCCGTGCTTGAAAACGTGCTCCGCATCCTCTATCATACGAACAGTTTACAAGCGAGCG # Right flank : CGCGTGGCATCCAACGTCAGTAACTCGGCGTCGTCAACAACGGATGTAACTCTCACGGGACCAGAGAATTACTACCGCCCCGTGGCTGCGGTTCGTTCGGGAGAGAGGGGGCAAAAAATCGCCGTTCTTCGTCATGATGGGTGCGGCTAGCAACCGGCACTCACCTGGATTGAGGAAGAACGGCGATGAAGGCAGCTCGGACGCTGCAAGGCTTGCAGCAACCGCAGTCGTTGATCGGCTATGTCCGACAGTTTCTCACCCCGACGGTCTGGAAGCAAGCCCGAGGGGTTGTTCCTCAAAGGCGTTCGGCGCCGCGGTGGGATCTCCAGCCGCTGGTCGTGGTCATGCTCGCCATGACCTGGGCCACCGGCGACTCCGAGTCCGAGAGGTTCGAGAAGGCCCGGGGATACTACGTCGCCTGCCATGAGTCGCGAAGACGCCCGGGAAAGACCTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGACCTCTGTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //