Array 1 126390-126117 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMS01000016.1 Escherichia coli strain MOD1-EC5257 MOD1-EC5257_16_length_127658_cov_20.8314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126389 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 126328 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 126267 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126206 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126145 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 295969-297583 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMS01000002.1 Escherichia coli strain MOD1-EC5257 MOD1-EC5257_2_length_314508_cov_23.0492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295969 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 296030 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 296091 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 296152 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 296213 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 296274 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 296335 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 296396 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 296457 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 296518 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 296579 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 296640 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 296701 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 296762 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 296823 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 296884 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 296945 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 297006 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 297067 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 297128 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 297189 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 297250 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 297311 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 297372 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 297433 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 297494 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 297555 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //