Array 1 28851-30160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHP01000034.1 Magnetospirillum molischianum DSM 120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28851 29 100.0 32 ............................. TGGTTTGGGGCGGTCGGCAATGGCGTTACAAA 28912 29 100.0 32 ............................. CACTGCTTGGAGCGTGCTTATGCTCTGCCGTG 28973 29 100.0 32 ............................. TCCACGCCAGCGCGGGCCAGCGGGTCAAACGC 29034 29 100.0 32 ............................. CGTCGCGATGCGTTGAGCATGGTCCGCGCTGT 29095 29 100.0 32 ............................. GAGGGATCGTGATCATGAACCCGGAAGGCGGA 29156 29 100.0 32 ............................. TGCGGGGGCAACATCCATAGACCCATCGCCAC 29217 29 100.0 32 ............................. GCAGAAGGAGCTGGAACTTGATGCTAAAGGCT 29278 29 100.0 32 ............................. CATCCAGGGTGCCATTCCACTTGCTGCCTGTC 29339 29 100.0 32 ............................. GCTCAGTTGGACCTTTGGGAGAGCGCTGCTCG 29400 29 100.0 32 ............................. TCGCTCGGGGTGTTGGTGCCGTTCAGGCGCGA 29461 29 100.0 32 ............................. CCTTTTTGACACGGGAGACGGCTATGGCACGT 29522 29 100.0 32 ............................. GACACGCTCGACCGGCTCGACAGTCAGCGAGA 29583 29 100.0 32 ............................. GCCGGAGCTATCGCGCTGGAGCATGCCGACGC 29644 29 100.0 32 ............................. TCACATCGCCAGCGCTTTCGATCCACACGCCC 29705 29 100.0 32 ............................. CCGACGATGAACACGCCGCCGATGATCGAGGC 29766 29 100.0 32 ............................. GCCCACCGCGCCGAATATGGGTCTACGTCGCT 29827 29 100.0 32 ............................. ACCACGACTTCATTCGCATTACCACCATCGAC 29888 29 100.0 32 ............................. GGTGATGACTCCTGTCGGGTGGAGGTGGCCGG 29949 29 100.0 32 ............................. ACTTGCCGAGTATGACGCAGCCGCGTCAAAAA 30010 29 96.6 32 ...............A............. CGCGCTGACGCCATCGTCAAAGTGGCCGACCA 30071 29 96.6 32 ............................A CGGGCATTAATTTCGTTCTCGCCACCGTCGGC 30132 29 89.7 0 ...................A...A...T. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 CCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GTTTCGGCGCACCAATCTGCTTGCCCGCCTGATTCCGATGATCGAGGAGGTCCTGGCCGCCGGTGGATTGGAGGTTCCACCCCCCGCGCCCGAGGCCCAGCCGATCGCTATCCCCGAGGAGCCGTCCGGCGATGCTGGTCATCGTGGTTGAGAACGTTCCGCCCCGCCTGCGCGGCCGCTTGGCTGTGTGGCTGTTGGAAGTCCGAGCCGGTGTTTATGTCGGCGATTACGGAGCCAAGGTGCGCGACATGATCTGGCGACAGGTCCAGGAGAATATCGGCTCCGGCAATGGCGTGATCGCCTGGACCGCGCCGACTGAAGCCGGGTTTGTCTTCGATACCTGCGGTACCAACCGACGCGATCCCGTCGATTATGATGGCTTCCCCCTGGTCGCGTTTAAGCCCCCTCTCACCGATAAGACGCGATAAGAACATACAGAAAACCTCGGTGTGCTGTTTGACATCGTGAATCTGTTGGCTAAACAATGGTCTCCAGCCAGA # Right flank : GCGTTCAGTTAGCGGACATGGGCCTTCTCCATGCGGGGGGCTAACGGGATCGGCCGGGGCCGGGGGGGGGGTGGTTTCGCCTGATCGGGCGTGAGGGCGGTTTCGACGAAGGCCCCCATCGCGTGGGCGAGGTCGGGATCGATCGCGACGGTCTGGCGCTCAGAGAGCTGGCGGGCGACACGGTTGGCCAGGATCTGAAATCGGTCGCAGCGGACGACCCGGCCGCCGACGGCACGCGCAGCGGCTTCGGCCTCGGGGCTGGCGGTTGGGGTTAAGATCTCGATCGCGGCCTGGGGGTGGCGGTCCTTCAGCGCCGTCGCGGTGTGGGGCAAATCGGCGTCGCGGCCAACCAGTAAAGCGGGCTGATCGGTGCCGGTGCGGGCCAGACTGGCGGCAATAGCGTCGGTCGAAAGTAGGATCGGCCCCGCATGGGGTTCGGGGGCATCGAGCCGCCCGGCGGGATCGAGGACATGGCGCAGCCCGGGGCGGGTAGCATCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 303676-304507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHP01000001.1 Magnetospirillum molischianum DSM 120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 303676 32 100.0 34 ................................ AAAATCTCCGGGCGTAGGATGTTGTGGGGCATTC 303742 32 100.0 35 ................................ GGTCGGCAGGATGGTCTTGGCCAGAGTGGTGGCGG 303809 32 100.0 35 ................................ TCCGGTCACAGAGGAAAGGGCGGTCAAGAACTGCG 303876 32 100.0 36 ................................ CGTAAGAAACCAATTCGCCGTCAACCCAACACAGCG 303944 32 100.0 34 ................................ TCGCTTCGGCCATGTTTTACGCTCCGGCTAACTG 304010 32 100.0 35 ................................ TATTTTTTGGAAGATGAACGGAACAGTGTCCGCCC 304077 32 100.0 36 ................................ ATGGGCAGGCTCTTCAGAATGTCGCGACCGATGCGA 304145 32 100.0 34 ................................ GAACCGCCACGGTCTGATTGTCGATGCCACCCTG 304211 32 100.0 33 ................................ CGACGTATCAGACGGCCAGCGTCAAGGCGCAGG 304276 32 100.0 35 ................................ GCGAAAGACGTGAGCCTGTGCTTTCGAGGCCGACA C [304280] 304344 32 100.0 34 ................................ CAGGAAGTAGCCCAACTCGCGAATGAAGAAATCT 304410 31 96.9 35 ....-........................... CAGTTGCGCTTGACAAAACCATCCGGGGCGGCTGC 304476 31 78.1 0 ......T...........T.-...GG.A...G | T [304489] ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.1 35 GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC # Left flank : CCGATGATGGTCTTGGTCACCTACGACGTCAGCACAATCGATCCGGGCGGGAGCCGCAGGCTGCGCAAAGTCGCCAAGGCCTGTCAGGATTATGGACAAAGGGTCCAGAATTCCGTCTTCGAGATCGAGGTCGATCCGGCCCAATGGGTCGGCCTGAAAGCCCGGTTGGAAGCGATTATCGATCCTGCCGTTGACAGTCTGCGGTATTATTTCCTTGGATCGAACTGGCAGCGTCGTGTCGATCATGTCGGGGCAAAACCGACACTCGACCTGAACGGTCCTTTGATCATTTAAGACTGGCCGATTTCGCTGGAATGATCCCGTGCGAACCTCAAGCGTGTCTGGAATTCCCGGTCGGTTCGCACGAGGGCTAACTCTTTGACATCGTGAATACTTGACGGTCCAGCGTCGCGCTGTCGGTGAAAAAACCCGCTTTTGGCTCGCCGGTTCGCGCCAATGCGGCGATTTTCTCAATGAGAGCAATCTGTTATTCCTAGGCT # Right flank : GCCCCAGATCCTTTTGGGGGCGAGCCTTATTCGTCCTCGGCGATCGGTTCGAACTCACCATTGCTGTCGAGTTCAATCGGCACGCCGGGTTGAACCTTGGCGCTGCGGATCGCCAGGGCGCTTTTTACGTGGCTGATATTGGGTGCGGCGGTCAGGCGGGTGGTTAGGAAGCGCTGGTAATCGTCCCAATCGTGGGCGACGATCTTCAGTAGAAAATCCATCTCGCCCGCCAGCATGTGGCACTCGCGTACCTCAGGCCAGGTGTTGGCAAGATCCTCGAATGCCTTGAGGTCGCTTTCAGCCTGACTGCTGAGTCCGACATGGGCGAAGATGGTGACATTATACCCCAGGGCCGCCGGATCAATGTCGGCGTGGTAACCCCGTACATATCCCGCCTCTTCCAAAGCCCGGACCCGCCTCAGGCAGGGCGGGGCCGATATTCCTGATCGTCGCGCCAGTTCGACGTTGGTCATCCGGCCGTCGGCTTGCAGATCGGCGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //