Array 1 356289-357597 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUO01000004.1 Salmonella enterica subsp. enterica serovar Cerro strain 155 NODE_4_length_386888_cov_22.6355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 356289 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 356350 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 356411 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 356472 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 356533 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 356594 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 356655 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 356716 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 356777 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 356838 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 356899 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 356960 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 357021 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 357082 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 357143 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 357204 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 357265 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 357326 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 357387 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 357448 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 357509 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 357570 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 374304-375492 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDUO01000004.1 Salmonella enterica subsp. enterica serovar Cerro strain 155 NODE_4_length_386888_cov_22.6355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 374304 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 374365 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 374426 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 374487 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 374548 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 374609 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 374670 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 374731 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 374792 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 374853 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 374914 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 374975 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 375036 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 375097 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 375158 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 375219 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 375280 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 375341 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 375402 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 375463 29 93.1 0 A...........T................ | A [375489] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //