Array 1 674975-673603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053214.1 Salmonella enterica subsp. enterica serovar Kedougou strain Sal162 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 674974 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 674913 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 674852 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 674791 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 674730 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 674669 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 674608 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 674547 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 674486 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 674425 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 674364 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 674303 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 674242 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 674181 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 674120 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 674059 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 673998 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 673937 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 673876 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 673815 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 673754 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 673693 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 673632 29 96.6 0 .......T..................... | A [673605] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 691990-691230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053214.1 Salmonella enterica subsp. enterica serovar Kedougou strain Sal162 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 691989 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 691928 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 691867 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 691806 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 691745 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 691684 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 691623 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 691562 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 691501 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 691440 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 691379 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 691318 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 691257 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //