Array 1 63478-62772 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXQG01000007.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 63477 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC 63416 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 63355 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 63294 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 63233 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA 63172 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC 63111 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 63050 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 62989 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 62928 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 62867 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 62798 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72808-72230 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXQG01000007.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72807 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 72746 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 72685 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 72624 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 72563 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 72502 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 72441 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 72380 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [72375] 72318 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 72257 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20068-21190 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXQG01000044.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20068 29 93.1 32 ............CA............... GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 20129 29 93.1 32 ............CA............... CGATTACGGAGTCGTTCACAAACCGACCACCG 20190 29 100.0 32 ............................. TTGCGGACGTTCAGACGCTGCATGGCGTTCTC 20251 29 100.0 32 ............................. TTATCAATGGGGAAAAATCTTCATTTGTAACT 20312 29 93.1 32 ............CA............... AATCCTGGAGCTGGAAAGGGAGCTTGCCTCGC 20373 29 93.1 32 ............CA............... GCACCCTGGGATGCCTTTTGCACAGTGTCAGG 20434 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 20495 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 20556 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 20617 29 96.6 32 ..............A.............. CACTACCAGATCCGAATGGACACCCGTAATGA 20678 29 93.1 32 ............CC............... GAATGAGAGCAAAATAATGAAATTAACAGGAC 20739 29 100.0 32 ............................. CTAATGAGCGGTATATTTTTTCTAATCTGAAA 20800 29 93.1 31 ............CT............... TGACTTTTAAAAAAATCAGCTGAAACAGCCG 20860 28 93.1 32 ..........-..C............... TGCGTGCAGTAAACGAAAATACATCGGTCAAT 20920 28 96.6 32 ..........-.................. AATGGTGACAGGCAGTGCACCGGCCTAGAGGC 20980 28 93.1 32 ..........-..C............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 21040 29 100.0 32 ............................. TAAAAGCGTTTTACATGCATTCAAAAAAGTTA 21101 29 96.6 32 .............C............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 21162 29 69.0 0 ..........A.CA.........ACCTTC | ========== ====== ====== ====== ============================= ================================ ================== 19 29 94.4 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CACAAAGTCACAACAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAGGATTTGAAGGTTTCCAGCATGTCAAAATCTGCAGCGGGTACGGTAGATGAGCCGGGGCGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGCTGGCGTGGCGGGGAAGTGCTGGCAGTAAATCCGGCCTACACCAGCCTGAAATGCGCCTGCTGTGGTCATACCGCGAAGGAAAACCGTCAATCGCAGGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTACTTGCCTGCGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCACTAATAATGGGAATCCCCCTCCTGAATCTCGCAGCGTGAAGG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //