Array 1 5113794-5114852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015423.1 Paenibacillus polymyxa strain J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5113794 32 100.0 36 ................................ TATCGAGAAAGGAGGACAAGGAAGATGCTAGAAAGG 5113863 32 100.0 33 ................................ CTCGGTGCTGACGCGTCCATAACCAGCAGCACG 5113929 32 100.0 37 ................................ GCTCAGGCTCGAAATGGACGGTTCAGGCGTCCCGCAG 5113999 32 100.0 37 ................................ GTCCATAGACCTAGCACCTACAGCAAAAATTCCTGTC 5114069 32 96.9 37 ..........A..................... GCTTCGGAATCGGTCAAACGCCAGTGTGGGCCAAGCC 5114138 32 96.9 36 ..........A..................... TCATTAACCACGGTCGATTGATCGTAACACCTAAAC 5114206 32 96.9 34 ..........A..................... TCTCCATGCAACGGCCTGATAGTGACGTGCTGGA 5114272 32 96.9 36 ..........A..................... GATCTGGTTGTCCTCGACATCCGCGGTGGATATAGA 5114340 32 96.9 34 ..........A..................... CATTCTTAATTGTGTTAACTCTAAAAACGTCTCC 5114406 32 96.9 38 ..........A..................... TAAGTATGGATGGCGAAATCTAAACGGGACGAGTAGGG 5114476 32 100.0 36 ................................ TGCATTAGATGAGTGATCACGTTCGGCCTTACTATA 5114545 32 100.0 38 ................................ AGACGTAAGCCACCAAGCAAAGAAACAATTCTCCCAGG 5114616 32 96.9 36 ...................T............ TATTACGTTCGTGAGTTTGGTGATTCTGTCGCTCTG 5114685 32 96.9 34 ...............G................ GACACAAGAATTCGACAGACAGGAAGGAATTTCC 5114752 32 100.0 36 ................................ TTCGAACATGAACACGCGTGGTATCTCCCCGTCGAC 5114820 32 96.9 0 ...................A............ | A [5114834] ========== ====== ====== ====== ================================ ====================================== ================== 16 32 98.3 36 GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Left flank : CGTGTGAATGTCATCTATCCGGGTGCCATCTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGACAACCGTTGGCTGATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCTGATCATTCGCGACACATTACTGGCGCACAAATTGTCATTGATGGGGCAGAGTCGTTATTGTTTTAGAAATAGAGCATTCTCTGGGACAGAGAAATGTTTTGTGGTATCCTGAGTGTATTATCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAAACCTGGATCCTTCGCACCTCGAAATTTGTCGAAATGGTTTTGAATTAGCTTTCTTCGTTAGAAATCAATAATCGATTCAAGCTTTTTTGACATCGTTTTTTTCGAAAATGCATGGAATTAATATCATTAGGGTATTAAATCCTTCATTTTCGCTGTCGCACTCTAT # Right flank : TATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCGTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCCGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTACAATGCTCGCAATGGGCGCGATGAGAAGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGACGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTAAGTGACCGGCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTACCTTCCACACGAGAAATGAGCGTTCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5119410-5120451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015423.1 Paenibacillus polymyxa strain J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5119410 32 100.0 35 ................................ TTTGTTCCTCGCTCAGCATGCGGATCAGGTGTATG 5119477 32 100.0 36 ................................ TGAGTCGTCCATTGTAAGAATGCATGTTGAGTATCC 5119545 32 100.0 34 ................................ TTTGCAGTACTTAGGAGTCCAAATGTAAAAGGAA 5119611 32 100.0 34 ................................ TGATATAGATGATTGGTCGCATGTATGATATCTC 5119677 32 100.0 36 ................................ ACTGAGCAACCACTTCAATTGCATGTTCCTCTTCTG 5119745 32 100.0 34 ................................ ATTTTAAAGTTGATCCAATGGCTATGATAAAAAT 5119811 32 100.0 35 ................................ AACACTACAATCACACGAGCAAAAGTCTTGTTCGC 5119878 32 100.0 37 ................................ ATATTGCGTTTTACAGTAGAAATTATCTTGCATGCCA 5119947 32 100.0 34 ................................ ATCGACATAGAGGTGGACGATTACCATATCCTCG 5120013 32 100.0 38 ................................ TTCAAGGGCTATCGTACACGGCTTGAGGACGCAGTTTC 5120083 32 100.0 35 ................................ TGTGCTGTCCTGGCGCACCCTTAACTCGCTTACCT 5120150 32 100.0 34 ................................ CAATACCGAAATGATGGGGGGTGGAATTATTAAA 5120216 32 100.0 33 ................................ GGATCAGGAGCAATGGGCATAGCATCCGGTTCA 5120281 32 100.0 36 ................................ GCGTATCCAGACGGTTTATGCTCGGTGTAGCAAAGA 5120349 32 100.0 37 ................................ ATCAAATGACACGCCAGCACTGGCAGGGCATCCCGCA 5120418 32 90.6 0 .............................CGG | CA [5120444] ========== ====== ====== ====== ================================ ====================================== ================== 16 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAATGCAGCCGGTATGATGAACAGGGTTAATAACTCAACTTTTGCAGAACGTCTTTATGAAATATTTTACAATACCTTTATGTTTTTTGAAAACATAAAGGTATTTTTCTGATCAATGTAGTGGATATTTCTGGATGCATTTACCCAAAGCCAGAACGTTTAGCTTTGGAGTTAACTGGTGGAACCTTGCTTTTAAATGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTCCTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGAATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGTTTCGCACCTCAGATTTTGTCGAATTATATCGAATGTGAACAAATTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGTTACTTAAATAGGGGGCATTTGACCCATTATCGCT # Right flank : GAGCAGCCGCCACTTGGTCGTACGAGTGGAGAGCGCCTCTTTATCCGAAATCATGAAGAGGTCCGTGAAGTGAGGAGCTGGAGATTTTACGCGGTTTGGAGGGGACGGCGGCAGTTCAGTACAATTCCGTGTGGGATGATCTGATCTTGCAGCAAAAAGATGATTTTTATTTCCATGGACGCCATAAGCGCCCGCCGTTAGATAACGTGAATGCCCTATTATCTTTTGCCTATACACTGTTGTCCAACGATATGAAATCCGCACTAGAAGCTGTCGGTCTATGCTTATGTAGGTTTTCTGCATAGAAGATCGTCCAGGGCGAGCCTCCTTGGCACTGGATGTGATGGAAGAGCTTAGAGGAGTATATCCCGACCGTTTTGTTCTTACATTATTAACAAAAAATGATTCATGGCAAAGGATTTTACAAAAAAGAAAACGAGGCTGCTATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAAGAACGGAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 5121561-5122401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015423.1 Paenibacillus polymyxa strain J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5121561 32 100.0 35 ................................ ACTTGACAGGCCAAGCAGTAGGGGCGCGTGTTCGA 5121628 32 100.0 35 ................................ AAGACGCAACAAAGCTAAACGCTATTGAACAGGAA 5121695 32 100.0 34 ................................ ATTTTTCTTGTGCATCGTTTTATTTCTCCTTGAT 5121761 32 100.0 35 ................................ GGATCCGTTATCGACGCCAACGGCGCATGGCTGAC 5121828 32 100.0 33 ................................ TTCCAGCAGGGCATCTTTAATGCCACTAATACT 5121893 32 100.0 35 ................................ ATATAAGACCTCCTAGTAGAAAAGCCCACCTTTTA 5121960 32 100.0 36 ................................ TGTATAGACCGTGTGCGGTGCGAACACATAGTAAGG 5122028 32 100.0 38 ................................ CTTGGATGATCGCATTTACAGCCATACGGCGAACGCGC 5122098 32 100.0 36 ................................ AATATCTTAGGCAATTCCTCGCACAATTCAGGACAG 5122166 32 100.0 36 ................................ CGCAAAATGAAAACGCGAGAGCAACAAGCAAAAATC 5122234 32 100.0 34 ................................ GTCATGAGTCTAGCCGGGGTTGTCATAAGTGTAA 5122300 32 87.5 37 .........TG.A................T.. TATCTTGCCGTTACTATTTGTGTAGCAGAGGTGCTAT G [5122314] 5122370 32 84.4 0 ......T...................G.T.TG | ========== ====== ====== ====== ================================ ====================================== ================== 13 32 97.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTTGATCTTGTTAATACTAATTACGTATGATGTAAGTACATTAGATAGAGAAGGCAGAAAAAGACTGGAAAAGGTTGTGAAAAGGTGCGTAGACCACGGACAAAGGGTGTAAAATTCCGTGTTTGAGTGCATTTTGGATTCGACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAACTTTGGAGATAGCTATAAAAAGAAAGTAGAGCAATAGGGGCTAAGGAAGCTTACGATATGGAAAGCCCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAAAATTGCTATTTAACCGTAAAAGTCAATAGTTGATCCAAGCTTATTTGACATCAGTTTTTGCGACAATGTGTAGAATTGATATCATAAGGGTATCAATTACTGCATTTTCGCT # Right flank : GAAAAAGAAGGCTTGTTTCGTGGCCTGCCCAGCAGTGAATAGGTGAAAATTTCTTCTTAACGGATTTCTTATTCGACAAATTCCCCCTTACTTTTATGCAACAATTAACTAACATTTACAATGGTTGAAGTATAAATTAAGGTGGGAGTTGCTGCTTATGAGAATTTCCATGAGTAAGTTTTTAAAGCGCTATGCAGCGATTTTGTTGGGCTACGCAATATGTATAGGGTTATTTTACGCTTTGGGATATAAGATGAGCGCTATGGGAATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGTATTATCAAAGCGAGAGAAATGAACCTAGGTATCCCCTGATTGCATCAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCAACAGAGTTTCTGCACGGGACCTCTATATCATTTACTGGTGAGAATGCACATAGGGAAATGAATCCGTCATGTCAACTCTGTGAAACCTTTTATTTCGGCA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //