Array 1 533887-535130 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635782.1 Anaerococcus urinomassiliensis strain Marseille-P2143T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 533887 24 100.0 37 ........................ TTTGGGCTGGCTGTATGATTGCATATAAGGTTGGTCT 533948 24 100.0 37 ........................ TTTGGGCTGGCTGTATGATTGCATATAAGGTTGGTCT 534009 24 100.0 37 ........................ TAACCTTTGCTAATTTCTTATTAGTATCATTAAGTCT 534070 24 100.0 37 ........................ CCAACTTTAATGAAAAAACCAATAGGTATAAAAGTCT 534131 24 100.0 37 ........................ TAAATATATAACTTTTGCTGGAAATATTACTAAGTCT 534192 24 100.0 37 ........................ TATCTGTAATTGGTGTAAAATCCAATGAAACAGGTCT 534253 24 100.0 37 ........................ TATCCAGTCTATGTCTTCAAAAATTTCTTCACTGTCT 534314 24 100.0 37 ........................ TAAATGCTTTTGCTATATCCATACTAGAACGTAGTCT 534375 24 100.0 37 ........................ TAGCAGCTAACACATCGACTACGATTGCATTACGTCT 534436 24 100.0 37 ........................ TCCTACGTGGCGGTAGAGTTGAGTGGGATTTGCGTCT 534497 24 100.0 37 ........................ TATATCATCTGTGGTAATGCGACTCAGGCTGCGGTCT 534558 24 100.0 37 ........................ TGCTCAGACTGTTAAGCAATTGCTTGATGCTGGGTCT 534619 24 100.0 37 ........................ TAGTCTATAAATCTTGGTAGATAGGTGAGGATTGTCT 534680 24 100.0 37 ........................ TTACCGACACTACCGGGAAAGTAGGAGGAGAAAGTCT 534741 24 100.0 37 ........................ CTTATTAATTTGGAGTTGGAGAGAAGATATAAAGTCT 534802 24 100.0 37 ........................ TATACAAGGGTGATGGTTATAAAGAAACAAAAAGTCT 534863 24 100.0 37 ........................ TAGTTACTCTTACATCATAATCAAGGTAATTAAGTCT 534924 24 100.0 37 ........................ TATCCAAGAATCCAATAAAAAAATATTTGGTCGGTCT 534985 24 100.0 37 ........................ TATTTTTCTAACACAACCCAACAATATATTTGAGTCT 535046 24 100.0 37 ........................ CTTAATGATGAAACGGGTCATTATTTCGCTGGCGTCT 535107 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 21 24 100.0 37 ATCCCGCACACGCGGGGGTGATCC # Left flank : CTAAAAAATTCAATCATAGAAATAGCTTGTATAAAAGCAATAGATGGAAAATTAGAAGAGTTTGAAAAAGCTATAAAACTGGACTCAAAACTACCAGAAAACATAAAAAAATTAACAGGACTAAATGATGAATATCTAGAAAAAAATGGAGTAGACGAAAAACAAGCTTTGACAGAATTTTTAGAATTCATAGGAGAATTGCCAGTAATAAGCTACGGTAATAACTTTGATATCAATTTTATAAACCATGCACTTAATAAAAATGGATTACAAACAATAAAAAATCAAACAATAGATTTAATGAGATGTGTAAAAAAAGAAAAAAGGTTTATAGAAAATTACAAACTACAAACTATATTAAAAGCTTACGGTATAGATAAAAACATACCACATAGAGCATTAGAAGATGCGAAATTAACCTATGAGCTTTCTACAAAAGTGAATATTTTAAAAGAAAAATTAAAATAGAATGGCTAAAAATACGGATCAAATAACTGTCT # Right flank : CTCTTAAAGATGAAACCTACAAGGCTAGAGAAGCGTCTATCCTGTAAATGTCAATATAAAAATGTACATTTTTGGCTAAATATGAATGTACAATTTACTCCTTGTTAACAATATCCTTTAGCCTATAGGAATCACCTACAATCTGAATAACAGTGCAATGATGAAGAATTCTATCAAGTATAGCGTTAGCTATTCTTGTATCATAAAATATACTTTCCCAATCTGAAANTGATGGAAGATACAATGGAGTGGTCAAAGAATATATGAAATATATGTAAAAAGTCTTTCCCCTAGGGGAAAAGACAAGTGTGGTCAATATCTTTACTATATGTGGACCACTTTTCGATAATAACTGTGGACCAATTTTCGGTTGACATTTACATATGTTGAATATCTTTGTCTTGCCGCTTCTATACCTATTGATATTGATAAATGAGTTTTGCCTACTCCACTCGATCCTAGAAATACTATATTTTCATTGTTTTCTAGAAACCCTAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 537300-537571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635782.1 Anaerococcus urinomassiliensis strain Marseille-P2143T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 537300 28 96.4 33 A........................... CGGGGACTTATATGATTTTTTGGAGTTCTTCGA 537361 28 100.0 33 ............................ TGTCATCCGTATCCCTTGATTGGTTGTTTGTTA 537422 28 100.0 33 ............................ TAGCTTCAAAGTCTTCAGCTGTTTCAAATGCTT 537483 28 100.0 33 ............................ CAAAGTAAAAATTTATATAATGAAACTTTTACT 537544 28 78.6 0 ..G..................AATT..T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 33 GTCTATCCCGCACACGCGGGGGTGATCC # Left flank : GAACTAATTTTATTAGACTTAACGAAATATTGATTAAACTCCTCATGATTTTTTATGAAATGTCTAAATGTGGATGATGCAACATCTAAACCATAATTATCAACTAAGTATTGATACAAGTTAGTTTTGTAGTGAAACTTCTGTATACTAGAATCACATAAAAGCTCCCTAATTAAGGGGATAAAAGGATCGATCTTACTCGCCTTCTCCTTAGTATTAGTTTTATTGTATCCATCATAGTATTTCTTTACAGTTCTTCTATCAACACCTAAATCTTTTGCTATTTCTGAAAAATTGACTTTAATATTTAACACCTCCTCAAAAACTTTTAATTTATTTAAGTCATTTAGATTCTTTATTTCAAAATATTTTGAATCTTTTAGTTCTAATTGGTAATACATATATTCTCCTGATTATTTTATTAAATGTATTATCCAATTAAGTTTTTATTTGTACATTTTTATTTGACCACTTTTGTACATTCTTATTTTAGCATTTAC # Right flank : TAATATCAAAAAGGGGGCTGTTGCAAATTGATAGATATCTAACGTTCCATCATTGGAGTGCACTCCCAGAAAGTTTGAGGTTTAGCCCGCCGGCTCAGGGAGGCCAAACTTTCTGGGAGGGTGCTCGAATGATATAGGAACGATTTATCTATTTTGCAACAGCCCCTTTTATTTTATCTTATTCTATTTTTTGTTGATTATTGGATATTGTCAAAAAACACCATAGAGTGCTCTATATCGTGATACTTATATCCTAGGTCGAAGGCTTCTTTTCTTTGAGCTGATGAACCATGAGTGAATGTATCTACATTAACACTTCTTCCTGACATCTCCTGTATTCTGTCATCTCCTATAGATGCAGCTGCATCCATTGCTTCTCCTATATCTCCTGGGTCGAGGTATCCACGTTCTTCTACATAGTATGCGAATAGTCCTCCAAAATAATCTGCCTGTAACTCTTGGGCTACAGAGTATTTATTGTATTCTTTTTTAGATAAAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //