Array 1 69216-71153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTP010000019.1 Xanthomonas vasicola pv. vasculorum strain NCPPB 795 scf_29859_19.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 69216 31 100.0 34 ............................... CAGTCGATTACAGAGAAGGCAGGCAGTCCGCCGA 69281 31 100.0 34 ............................... GGTGTACACCGTTGGCCCGGACGGCACAGAGACC 69346 31 100.0 35 ............................... TTCAGCTGTTCGGTGCGTTGGGTGTATCAGGCCAG 69412 31 100.0 35 ............................... ACTCCACTCCTCCTGCGTGAGGCCCGTGTGCTTTA 69478 31 100.0 34 ............................... CTGTTTGATCTTGCCGATTTGGAGATGTGGGACA 69543 31 100.0 35 ............................... CGCCACTGGAACATCACTCCCCCGCATCAATGCAG 69609 31 100.0 35 ............................... TGGCAATTTGCTCGTTGTCCGAACTGCAAGGGCGC 69675 31 100.0 35 ............................... CTTGGACAGTTCTGCCCCCTCTAGCAAATGCCTGA 69741 31 100.0 34 ............................... TCGTGGTTACCCTTAGTAAAGATCATGCGTGGGG 69806 31 100.0 34 ............................... CAAGAAGGTAGTGCATCAGTACGTCTGGGTCGAT 69871 31 100.0 35 ............................... ATCAGAAAACGCGCCGGAGTTGTTGCCCTCTTCGC 69937 31 100.0 33 ............................... GGTTCCTTCGATCAGCTCGCGGTGTGCATAACC 70001 31 100.0 34 ............................... GGTCAGTGCGATCGCTTTGCGTGCCAGCTCGTGG 70066 31 100.0 34 ............................... CAGGAGGTGGCCACGTGCCCACGTGACACGGCCA 70131 31 100.0 36 ............................... GGGCACTTCACTGTCCCAGCCATCAGGACCCTTGGA 70198 31 100.0 36 ............................... GGGTACGAACGCGCCCGGCGTGGCCTCGCGCTCAAG 70265 31 100.0 35 ............................... TCGTGGCCTTGCGCGCAGTGAGCGGCCCACACCCG 70331 31 100.0 34 ............................... CTGCCACACAGCCAAGTGTTGATGCTGTGCACCT 70396 31 100.0 34 ............................... AGCTAAGCTTGGCGATGCTGCGCTTGACCACTTT 70461 31 100.0 36 ............................... TTTTCGAGCCAGCACGTCGGAGCCAGTCCGGGGCGG 70528 31 100.0 35 ............................... TCATCCGCCTGACCTTGGCTCTCTCGCTTGTCAAT 70594 31 100.0 37 ............................... TCTGCCTTGGGTCCCATGAGATGCAGCAGCGCAGCTC 70662 31 100.0 34 ............................... GCCCTAGCCAAGGAACGCGGCCAGCTTAACTCCA 70727 31 100.0 35 ............................... CGAGGATCTGCAATCGGGCGAAGTGGTCATTGCAG 70793 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 70861 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 70927 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 70992 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 71058 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 71123 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 30 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //