Array 1 20-319 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJT01000720.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 86 36 100.0 30 .................................... GTGCAGTAGATTGACCACTGCACACGGCGG 152 36 100.0 30 .................................... ATTCACACGACACACAGGAAGCCCACGAGA 218 36 100.0 30 .................................... CCCGCGACCACTTGGCCAAACGCGCAGAAC 284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCGCTTATCGCAACGGCTGG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 230-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJT01000940.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22944, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 229 29 100.0 39 ............................. CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACC 161 29 96.6 43 .........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 89 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 97.7 42 CGTCATTCCCGCGTAGGCGGGAATCCAGA # Left flank : TTCGTGGGAATGACGCGGTGCAGGTTTCCGTGCGGATGGAT # Right flank : ACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGTAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 967-2784 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJT01000237.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22944, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 967 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 1033 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 1099 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 1165 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 1231 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 1297 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1363 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1429 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1495 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1561 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1627 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1693 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1759 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1825 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1891 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1957 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 2023 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 2089 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 2155 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 2221 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 2287 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 2353 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 2419 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 2485 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 2551 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 2617 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 2683 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 2749 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //