Array 1 99815-100082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPJ010000017.1 Pseudomonas cichorii strain LCYJ23 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99815 28 100.0 32 ............................ TGGCAGCGCACTCAATGCGGCGTTCAGCGCCT 99875 28 100.0 32 ............................ TATGAGTCAGCTCTTCAGCTCATGATTGGTGC 99935 28 100.0 32 ............................ GTAGCCCCCTTCACTCCTGAAGGCATAAAAGG 99995 28 100.0 32 ............................ GAACTGCTGGGCGTCGTACTCGATGCAGTCCA 100055 28 92.9 0 ............A.......T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAATAGCAAGACACCCACGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGTCTGGGTTTTGGTGATTATCCAGTCTGCCTGCTGGGCCTGTAAGAGCGAATTCATTCGCGAAACGGCGTTCCAGACAATACATCTCCTGTAAATGTACCAACCTCTCGCGACTGAAGTCGCATCCTACAAGTCCGGTGCCAGACCACCACTTAACGCACCCTCCTTTTGACCCTATTTTTTCGTCCCACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGGCGAAAAAAGGGGTAAAACGACCGCAAGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGCCTA # Right flank : AACCAATATCATCACTCATGCAGCCTGTTCAACCGCAAAATCCTACGCTCCTCTCATACCAGCCCTACCATTACCCACTCCCCATCCATCCACCCAAACTGAATCTCCTCATTTAACCCACACAGCCCCCCAAGCTACTCTTCCCGACAGTTCGCTACTAATTCAGCGACAGGGTTTGGCGACCCGACCAAGCTAAATCTCTCCCCATCGTGATGCAGGCGCTTTATCCTGTCAGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCAACAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAACAGCGATCTTCCCTGTACATCCTCCTTCGAATCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATGTTCACCGAATCCCAAGCCTGGTTCTGTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 999-1447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPJ010000025.1 Pseudomonas cichorii strain LCYJ23 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 999 28 100.0 32 ............................ AGGGAGGACAGATCCGCTTTGCCAGCGGGTTT 1059 28 100.0 32 ............................ TGGTTAGCCGCACCTTCCGCGTTCCAAAGCTC 1119 28 100.0 32 ............................ GGTTGTCGGACCTAGTGACGTGGCGTCGGAAA 1179 28 100.0 33 ............................ GGATCACGCTCGGACTTGAAAGCGCGGCGTAAC 1240 28 100.0 32 ............................ TTCATCGAACTTACCGACAAGGCCGGAACGAT 1300 28 100.0 32 ............................ CAGACCTGCGCCCAGAAGTCGGGGTTCTTTTC 1360 28 100.0 32 ............................ ATCTTCGAAATTCAGATAGAATGCGTTGTTGG 1420 28 89.3 0 ............A.......T.T..... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGGCTTAAGCTTGAAGTGCGTGCTATGGCGGCTGTGCGTCGGAGATCTTCGGGGCTGCCGGTTTCCTGGATACCGGTTCGTCAACCTTCGCACAGCTGCCACCCATTCGTTTGACGACGTTGTTTGGCAGCTTCAATCATCCAGGAGCTACGCCGATGTACACCCTCAATCCCTCTGCGCCCTGCACAGACCAATTTGAAGCCCTCGTTTTCAACCGCCATCACCGCGTCTTGCGTGCCGTCACGTCCGACGCTCAGGCCTGGTTTTGCCTGTCGGACCTTGCGCGTCTGATGGGCAAGCGGCTCGTGATGTGAAAAGCGATTGACCTTCGCGCCCGGCAGTTTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCGGCCCGCTTCAGCCCCTTTAAAATCAATGACTTATAAACACCTCGAAAAAAAAGGGTAAAACTGCGCTATGGCCATGGTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : ACTTTGCGGCATCAATGACGTCTCGCGGATAAATCCGCTCCTACGCCGAGACAGCGGGTGATTACCTACAGGCAGTCCGTATCTCACCCAACTCTTTTGCCCTACCGCACATAACCCTTCGGAACCGAACAGGTAAGATAATGCTCTTATGGTTCACTGATGTGACCGAGCGTTGAGGGTGGGTGTGTGAGTGATAATAAAGTCAGGGTGAATAACCTGGTTACGGGTGATATCTCTCATCCGCAAAAAGATATCTTTTTTGCAGCCGTCGAAACCACCCGGATGCCGATGATATTTACCGACCCTCATCGCCCGGATAATCCCATCATCTTTGCCAATCAGGCTTTTCTCGAGATGACGGGCTATTCAGCCGATGAGATCGTGGGCCGTAACTGTCGCTTTCTGCAGGGGCCGGAAACGGATCGCGAAGTTGTCGCTGCCTTGCGCCAGGCCATTGCAGACAAGCAAGACATCGCGACGGAAATCCTGAACTACAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16093-15825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPJ010000025.1 Pseudomonas cichorii strain LCYJ23 Scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16092 28 100.0 32 ............................ AACCCCTTGACCGCTCTCCGTGGCGCGCATGG 16032 28 100.0 32 ............................ TACCAGCGCGCCCCTGCCCTTGTAGCCTTGGG 15972 28 100.0 32 ............................ TCCAGCGAACATGTCAACTACCAGTTCTTGTT 15912 28 100.0 32 ............................ GCGAATCGAAAGCAGCTTTATAGCGGACAGCT 15852 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CTTTGCTCGATAACCTTCCGTTTTCAAAGAAAAATATGAGCTTGCGATCGTGTTACCCCTTTTTTTTCGTCGGTTCTGTAAGTGATTGATTTTAAAAGGGTGCATGGTGGGCGAAAAAAGAGGGTCAGGATCAGCAATTGACCCAGACTAGCGACCTCATCGCTCCTCGATTACCGAACAACCGCAGCGCAAGGCCTCCCTGCATGGCGAGAATCAATACTCCCTGTTATGTGTCTTGTCGCGGGCAAGCCCCCTCCCACGGGGATCTGATTTATCCGCGACACGGTATCGAGGGCAATACATTTTTGTGGGAGGGGCCTTGGCCGCGACAGTGAAGACAGAAATGCACCAGCAATGAACCCTTTTTTGACCCTCTTTTTTTCGCCTCAGATTCGTTCCTTAAGAATCAATGACTTACAAAACTTGGTAAAAAAAGGGGTAAAACAGCGTTTGGTACATATTTTTCTTTGAAAACGGAAGGTTATCTAGCAGAGTGTCTT # Right flank : TTTAGCTACACGGCAGTGAACTCGACTCGGTCGAGCAGGTATTCACCCAGGCGTTTCTAAGCTGCCTGCATGACACTGAAGTCGCCAGCAAGCTGCCTCCCACAAATTAATTCATGGCCTTAACTGATCCGCCTTGCTCGGTAGGCGGGTTCATTCGCGAAAGGGTACATCCGACATAGATATGTCGTTTGAAATACCCCTTTCCCGGATGAATCCGGTCCTACAGATTTGAACCGTGATCAGCCAACCCTGCACAAACCTTCTAGACTTCCCACCGCCCATACGCGATAACACTCCATCCCACCCCAAGCCCCATAAGCCCACCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGACACCGGTATCGAGACGTTGCATGCCCATTTTCACGGGAATGCACATGTCTACGATCCGCATTGGCATGACAGTTATCTGGTAGGTGTCACGGAGCAGGGTGTGCAGCAGTTTCACTGCGGGCGGCAGCGTTATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 16599-16867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPJ010000025.1 Pseudomonas cichorii strain LCYJ23 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16599 28 100.0 32 ............................ TGTTTGGCAAGCTGCGCCGGGCGGCACAACCC 16659 28 100.0 33 ............................ CCAGCCCAAGAGCCAGTCGAGCTGACAGGCATC 16720 28 100.0 32 ............................ AGGGAGATGACGCACGGATCCGCACGTGGGCA 16780 28 96.4 32 ...................A........ TACGACCCGGTCATTAACGGTCATCTGCGCTA 16840 28 78.6 0 A..A.......AAC...T.......... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTCTGCTAGATAACCTTCCGTTTTCAAAGAAAAATATGTACCAAACGCTGTTTTACCCCTTTTTTTACCAAGTTTTGTAAGTCATTGATTCTTAAGGAACGAATCTGAGGCGAAAAAAAGAGGGTCAAAAAAGGGTTCATTGCTGGTGCATTTCTGTCTTCACTGTCGCGGCCAAGGCCCCTCCCACAAAAATGTATTGCCCTCGATACCGTGTCGCGGATAAATCAGATCCCCGTGGGAGGGGGCTTGCCCGCGACAAGACACATAACAGGGAGTATTGATTCTCGCCATGCAGGGAGGCCTTGCGCTGCGGTTGTTCGGTAATCGAGGAGCGATGAGGTCGCTAGTCTGGGTCAATTGCTGATCCTGACCCTCTTTTTTCGCCCACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGACGAAAAAAAAGGGGTAACACGATCGCAAGCTCATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAAAGTGTCTA # Right flank : ACAATCAAACCATCTTTCTAAAAACCACGTACACACGCAGAATATCTGCCGGTTTTCAGGCCTTTTTCGCCAGCAAGCTGCCTCCTACACGTTCGTGTGTGTCTTAACTGATCAGCATTACTCTGGAGCGCGCTGTCTCCTACAGCCCATTCCGTAACTCCCTTCGCACACGAATCGCAGACTGATCTTTCTGACGCCCTGCCGCTCCCCAGCTCAAAAAACATATAAGCACCGCCTTACGCTATCGGCTATATATGTTTTCTCTCACCGGCCTAGTGCCATTAGTGGTTCGATCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTACTTGCAGCATTGCCGGGTATTGGTAAATGGCGGTCGGGTCGAGTATGTGACTGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCTATCGCCAATACCACCACGGTGCTTTTGGGCACCGGCACTTCGGTGACTCAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 26268-25580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPJ010000025.1 Pseudomonas cichorii strain LCYJ23 Scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26267 28 100.0 32 ............................ GAAGAAATCCGGTGGCTTATGGATTTGCTGGC 26207 28 100.0 32 ............................ AGCTACCACAAGGCGCTGCAGGAACTGAAGAA 26147 28 100.0 32 ............................ TTTCACGCTGGTCACGCAAGAAGCAGGCTTCC 26087 28 100.0 32 ............................ ATGTGTAATTGTTGCCGCAGTCACAGGCACCG 26027 28 100.0 32 ............................ AGCCACAGCACATCACTGGGTACGCGGATCTG 25967 28 100.0 32 ............................ CTGGGAATACAACGACCTTTCAAAAGGCATTG 25907 28 100.0 32 ............................ GAACACGACCGGCACCGGCCGGCCGGCGCTCA 25847 28 100.0 32 ............................ AGGCACCGCGTACATCGAGGGCATTCGACTTG 25787 28 100.0 33 ............................ AGGCCCGCTCTTGCGTTGCGACATACTCTGCAT 25726 28 100.0 32 ............................ TGGATGCGTGATCGGAGTGTTGTTAGTCGCAA 25666 28 100.0 32 ............................ GGCATTACTGAAGAGATGTATCAAGAGCTTGT 25606 27 82.1 0 ...........C.C.......C.C-... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CAAGGTGGTCAGGGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGTTGAGAGATCTGAGGGGATTGGGTGGGAGCGGATTTATCCGCGAGACGGAATTGAAGACAATTCATTTTGTGTGCTGAGACGTCCATCCCGCAGACCCAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGGATATGTCAGGAAATGGAGTTTTTCCAGGCTGTCATGTCGCAATTTTCGTGTTTTAGCGACACGTTATTGGGTCATGTCGTTGGCGACGACATATCAAACAGCAGGGCCTGTCGCAGCATATGAATATCTTTTTACGGCAGACAGGAATGAACCCTTTCCTGACCCTCTTTTTTCACCGCAGATTCGCCTTTTAAAAATCAATGACTTACAAGGCCCGATAAAAAAAGGGTTAAAAAGGCTGCTGGCGCATATTTTTCTTTGAAAACGGACGGTTATCGAGGAAAGTGTCTA # Right flank : CCAAAGCCCTCGTAATAACCACATTACAAGGGCTTCAGCCCGCATCAAAACCAGGGAACAGTCGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCCGGCTGGGCGTTGGCCTGTAATGATCCATGCTGGATGAACAGCAGAAACGTCTGGCCACTGGTGCGGCTGCGCAGTTGGGTGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCTTGTTCTTCGGTGATACCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGTTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGGCGATGCTGTGCGTCAGTGGGCACCACGCTCAGTTCGCCTACCCGCACATGGTCACGCATGCCCGTCAGCCAGGTCAGTGCCATCAAGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGACGGTCGCCCAGGCCGCTGGCCTTGCCTCCAAGAGCCGGGAAGCTGATGCCGATGTCATCGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //