Array 1 1329012-1327723 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEJ01000002.1 Yersinia pseudotuberculosis strain FDAARGOS_416 pRIID_124.contig.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1329011 28 100.0 32 ............................ TGCTGAGATTCCAGTATTCTGAATTAATTTAC 1328951 28 100.0 32 ............................ TCTAGTACGCCAATTTTGTGATTCTTTATAAT 1328891 28 100.0 32 ............................ CTTCAAAATAATGTTAATGCTAGGCTAGAGGC 1328831 28 100.0 32 ............................ CAGTTGAAATACATGTTCAAGGAAATGGTTTA 1328771 28 100.0 33 ............................ GGTTGTTCAGGGTAAATAAATCTCACCAGCCAT 1328710 28 100.0 32 ............................ TGAGCGATGGAGTGCCGCAGCTACACAACAAC 1328650 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 1328590 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 1328530 28 100.0 32 ............................ GGCTTCGTTGCCCCACAACGCGGGGACCAACT 1328470 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1328410 28 100.0 32 ............................ AATTTATTATAAGTGGAAATAATACTTGACTT 1328350 28 100.0 32 ............................ TCAAGTACCTAGGCATTAAAGTAATTAATTCA 1328290 28 100.0 32 ............................ AAGTAGCAAAAAGATTTTTAGTATAGATAAAT 1328230 28 100.0 32 ............................ AGCTGTAGGTTCGTCTGCGTCTGTTATGGCCC 1328170 28 100.0 32 ............................ ATCCAGGCATCAGACCCGACAGTTGTGACCAG 1328110 28 100.0 32 ............................ AGCCCGCTGGCTTACGACCCGAAGGGCGGTGA 1328050 28 100.0 32 ............................ TACTTCCCTGATCTGCGCCAACGGCTGTTTAT 1327990 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 1327930 28 100.0 32 ............................ GAGCATTCCGCGCTCGTCACGCGCCCTTACTG 1327870 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 1327810 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 1327750 27 89.3 0 .....................CC.-... | T [1327725] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1574616-1573026 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEJ01000002.1 Yersinia pseudotuberculosis strain FDAARGOS_416 pRIID_124.contig.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1574615 28 100.0 32 ............................ AAAAGTTAATTCATATCCATTCTCATAAGCAA 1574555 28 100.0 33 ............................ GCCCCGAAAAGTGTGTCTATATTAGGCATTGTT 1574494 28 100.0 32 ............................ TCCAGTAAATGCACTTTCCGCATCAATGTGTG 1574434 28 100.0 32 ............................ AGCTACTATCGGGAGAACATCAGCGGTACAAA 1574374 28 100.0 32 ............................ CCTTGGCAAGCCCATTCTGTTTCGGATAACTG 1574314 28 100.0 32 ............................ TCACGAGTTTTAACATAAGTAAATGTACTACG 1574254 28 100.0 32 ............................ AAAGAGAAGCCCCTCATTATGAATGATCGGTA 1574194 28 100.0 32 ............................ AAACTACTATTAATTTATTAACTCAAAATGTC 1574134 28 100.0 32 ............................ TCGTTGAAAGAACACATGTTGATGATGATTGG 1574074 28 100.0 32 ............................ ACTAATGTTTATATATCTTTAATATCTGAGGA 1574014 28 100.0 32 ............................ ACCATAAAATGTATGGTTATATGATTTTACCC 1573954 28 100.0 32 ............................ TATGTAGATGCTTTAAAAGGAGTGAAGAAAAC 1573894 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 1573834 28 100.0 32 ............................ TTAAAAGTGATGCTAATTCAGGAAGTGCGGAT 1573774 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 1573714 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 1573654 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1573594 28 100.0 33 ............................ AGCAGCAATGGGATGAAATTAATAATATTAAAA 1573533 28 100.0 32 ............................ TATCTGGAATCCCAGAAGTATTATTAGCTATT 1573473 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 1573413 28 100.0 32 ............................ GTGTCAGCTTTTAACGCATATAATGAACCAAT 1573353 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 1573293 28 100.0 32 ............................ CGCTAGACGCTTCATTTTTCATTGTAACTCAA 1573233 28 100.0 32 ............................ AAGTTAAACAGTATGTTGACGATGAAATAAGT 1573173 28 100.0 32 ............................ GAAAATCACATTGCCGGCGTGGATGAACAAGG 1573113 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 1573053 27 85.7 0 ...................A-.A.T... | C [1573029] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4880526-4881752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEJ01000002.1 Yersinia pseudotuberculosis strain FDAARGOS_416 pRIID_124.contig.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4880526 28 100.0 32 ............................ GAAGTACGGTCAGGAGCCGGGGGTGCAGTTTT 4880586 28 100.0 32 ............................ GTTCGAAATTATCCTTACGTGCAAGGAGCCGT 4880646 28 100.0 32 ............................ GTTCGAAATTATCCTTACGTGCAAGGAGCCGT 4880706 28 100.0 32 ............................ ACCATGAGAGGAATGAGAATACTGACGACATT 4880766 28 100.0 32 ............................ TGAAACAATAGCAAACAATAATTCAGGTATTC 4880826 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 4880886 28 100.0 31 ............................ ATGCCACAAATGAGTTTGTTTCCATAGCAGG 4880945 28 100.0 32 ............................ TGTAGCTGTAAATCCAACTGGCATTGGAGGAT 4881005 28 100.0 32 ............................ ACCCACACGCCGCCTGCCCATTCGCCGGTAAC 4881065 28 100.0 32 ............................ GATCTACTTCGCGATACCGCCCATCGCTGGCT 4881125 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 4881185 28 100.0 32 ............................ ACGTAATCCACAACGAAATATAATCTAGTGCT 4881245 28 100.0 32 ............................ AATCATCAGTAACGTGTGTTCTTTCCACAAGA 4881305 28 100.0 32 ............................ ATTTGCATAAACTTCACACGCTCGACTTAAAT 4881365 28 100.0 32 ............................ ATAGTGCCGGGGCGATGACAAGAGCAGTGATC 4881425 28 100.0 32 ............................ GAAAACGGAACATTACAATCCGGCGGATTACA 4881485 28 100.0 32 ............................ ACTCGATATCCGGTGCCGCACTTACATCAATA 4881545 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 4881605 28 100.0 32 ............................ CTATTGTGTTGAGCAACGGCGCGGAGCTGCAC 4881665 28 100.0 32 ............................ GGTCAGACTATGCGCGATGGATTGATTAAAGT 4881725 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATTGATTAGGATGTTTCAGACATTCGCGTGGGAATTTTCTTACTTTCATCACAGGAACCTCATTAGAGCACGCCAATATTCTTTTTTAATGTACCTAATAACCTCATTTAGTTAATAATCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACGATAATAACGCATGGGGATTCTTAGCCTATTCGCATCAGGGGAATCATTTTTTGACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAAGAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : AGGGTCACTGTTTGTGCACCAGCGCGGCCCCGGCCTGATCCTCTTGCTGGTAGGCCAACGCCACGACCAACGACTGCACCAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCAGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCCGTTCACCTGCTCACGTAACATCCCCCCGAGGCCATGGAGTTGCACCGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGTAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGTTGTAGTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //