Array 1 176-1824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHAE010000030.1 Pseudomonas aeruginosa strain 0654_S32 0654-S32-MH-C30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176 28 100.0 32 ............................ TGCGTGAGGAGGGCCAGCAATGAACCTCGCAA 236 28 100.0 32 ............................ AATAGGAACGCTTGTGGCTCAACAGAAACCGA 296 28 100.0 32 ............................ CATTCCACTCGGCCGGGATCGGCTGCCCGCCG 356 28 100.0 32 ............................ TGAACCGCCCACTGCCTCGAGGTGCCCACGAT 416 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 476 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 536 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 596 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 656 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 716 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 776 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 836 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 896 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 956 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1017 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1077 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1137 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1197 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1257 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1317 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1377 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1437 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 1497 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 1557 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 1617 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 1677 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1737 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1797 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11397-10349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHAE010000030.1 Pseudomonas aeruginosa strain 0654_S32 0654-S32-MH-C30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11396 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 11336 28 100.0 32 ............................ ATAGGGCCGAATGAAGTTGATGTGCTTGCCGA 11276 28 100.0 32 ............................ GCGAGGGCGTCGACGCACGCGACCGCGGCGAA 11216 28 100.0 32 ............................ AAGAACGGCTTCAGGCTGAAGCTAGATGCCTG 11156 28 100.0 32 ............................ ACGCTCGGGCCGGCCGCCAGCGGCAGCTCGGC 11096 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 11036 28 100.0 32 ............................ TCAACGACAAGGAGCTGCTATCCATTCTCGAC 10976 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 10916 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 10856 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 10796 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 10736 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 10676 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 10616 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 10556 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 10496 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 10436 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10376 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 207618-206989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHAE010000072.1 Pseudomonas aeruginosa strain 0654_S32 0654-S32-MH-C72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 207617 28 100.0 32 ............................ CAGTGGGAACCGCTGACCAGCAGAACCAGCCT 207557 28 100.0 32 ............................ ACCACTTCCCGCCCTGCTCCTCGACCTGTGGG 207497 28 100.0 32 ............................ AATCCGGAAATCCTGAAAGCGTGTCGCGACAC 207437 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 207377 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 207316 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 207256 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 207196 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 207136 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 207076 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 207016 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //