Array 1 4201-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGL01000032.1 Lacticaseibacillus paracasei strain FAM6410 FAM6410_scaffold_0032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4200 28 100.0 33 ............................ CGGGTAGCATGACCAGCAAGAGTAAAGGCCCTT 4139 28 100.0 33 ............................ CGTTCCCGATAGAGAACGAAAGGGGATGACGGT 4078 28 100.0 33 ............................ CATCCCATCCTGATTTATTTAGCAAACTGATTA 4017 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 3956 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 3895 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 3834 28 100.0 33 ............................ TGACCATTATTTCATCTGGCCCCCACATTACTC 3773 28 100.0 33 ............................ TACCAACCACTTTTAGAATGCTGACAGCCCCCA 3712 28 100.0 33 ............................ TACCTGCGATATAAGGCGCGTATGCCATGAGGT 3651 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 3590 28 100.0 33 ............................ CGTCATTGTGAGAATGCTGGCGTTCCCATTATA 3529 28 100.0 33 ............................ CTTTAAAAACTAAGGAGAAAAATCATGAATAAA 3468 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 3407 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 3346 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 3285 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 3224 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 3163 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 3102 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 3041 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 2980 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 2919 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 2858 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 2797 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 2736 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 2675 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 2614 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 2553 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 2492 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 2431 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 2370 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 2309 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 2248 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 2187 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 2126 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 2065 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 2004 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 1943 28 100.0 33 ............................ TACGCTTGCTGGTATGGCTCACCAGCAGGAGTA 1882 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 1821 28 100.0 33 ............................ TGGATTGAGCTGTACAAATCTGGTAAGCATTCT 1760 28 100.0 33 ............................ CAAGATAACGTTAATCGACTACTGGGACAAATG 1699 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 1638 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 1577 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 1516 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 1455 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 1394 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 1333 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 1272 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 1211 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 1150 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 1089 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 1028 28 100.0 33 ............................ CATCTCTTCGAACCCCGAATACAGCGTCATTAC 967 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 906 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 845 28 96.4 33 .................C.......... TTTATTAGAACTAGCTGAAGATGGAACAAATGA 784 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 723 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 662 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 601 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 540 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 479 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 418 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 357 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 296 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 235 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 174 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.9 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCGTCTTTGCCGTCTCTTCAGGGGCAGATTACGGGTTTTCCCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73204-71153 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGL01000051.1 Lacticaseibacillus paracasei strain FAM6410 FAM6410_scaffold_0051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73203 36 97.2 30 ................................A... TCATCTCATGGCGTCCTGAGGGGTCCAGGC 73137 36 97.2 30 ................................A... CATCAGTCGGATATATGTTTGCACGTCTAT 73071 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 73005 36 100.0 30 .................................... TCGATGCGATACTGATGGTTGCGCCTTGGA 72939 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 72873 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 72807 36 100.0 30 .................................... TTACAAAATTGTTGAACTGCGCCAAGTTCT 72741 36 100.0 30 .................................... AGCGCCATGTACAATGAACTTGTAAGATAA 72675 36 100.0 30 .................................... TTTTCAGATTCCTGAGCCGATCGCAAATCG 72609 36 100.0 30 .................................... CCGAGTGCATTCGGTGAATCAACCCTACAA 72543 36 100.0 30 .................................... AACGGCAAAAGCGTGAGGCTGAGCAAGCTA 72477 36 100.0 30 .................................... TGCATTTTTACTTTTTCACGTTGCACTAGG 72411 36 100.0 30 .................................... GGTGGCGCTGGAAACTGGATAAACCATTAT 72345 36 100.0 30 .................................... AAAGACTTGCAAGGCGTTCAGCGCTTGCTG 72279 36 100.0 30 .................................... TAAAAATCAATCAAAGAACGGCGCAAAAAA 72213 36 100.0 30 .................................... GATTCTCTTCGCCAGTTCTGTGTAGCTTTC 72147 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 72081 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 72015 36 100.0 30 .................................... CAGAACTGGTAACCGATCTTATCAACAAAG 71949 36 97.2 30 .............................A...... TGAAGTCATGGGGCTTTCTGACCCAAACTC 71883 36 100.0 30 .................................... ACGATGACAACCTTGAACTGTATTACTCAG 71817 36 100.0 30 .................................... ACATGAGACGAACCAACGATCAATCCGTGG 71751 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 71685 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 71619 36 100.0 30 .................................... CCAAAATATCTGGAATATTGCGTGCCACTT 71553 36 100.0 30 .................................... TTGTTTCCGGTGTTCCGATTGAGTATTTGA 71487 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 71421 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 71355 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 71289 36 100.0 0 .................................... - Deletion [71254] 71253 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 71188 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 98.5 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGTACGGCAAGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //