Array 1 7882-8700 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYU01000034.1 Campylobacter concisus strain AAUH-58UCo 1106631, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7882 30 100.0 34 .............................. GAAAATTAAAAGCATCATTAACAGATACATCAAA 7946 30 100.0 37 .............................. CACACTATCACCAAAGGCACGATCTTAATGCTCCTGA 8013 30 100.0 37 .............................. CAAAGAAAAGGCAGAGTATGATAAAACTTCTGTTGCT 8080 30 100.0 34 .............................. GCGAGAAATATATACCGCTTTTTAAAAATATAAA 8144 30 100.0 35 .............................. ACTCAACCATTGTATCTTTGCCGAAAGGGGTCAAA 8209 30 100.0 36 .............................. TCTAGAATTTTTGCTTTGCCTTGATAAATCTGTTCG 8275 30 100.0 38 .............................. GAAACTAAAAATCAAGAATTTAACTATGCAAAGGCTAA 8343 30 100.0 34 .............................. AACTACGATTTTTAAGGAATATAAAATGATAAAG 8407 30 100.0 37 .............................. TCTTGGCGTTGATAAGGACTACCTTAAAAAGATTGAT 8474 30 96.7 35 ....................A......... GCTCTTTATGCTTTGGATTAATTTCACTTTCTTTT 8539 30 96.7 37 ....................A......... ATAGCGTAAGCTCGGTCTTTTATATAGGTTTTTTGAA 8606 30 96.7 35 ....................A......... GGCATCGTGTTGATGAAGATCCAAATAAAGATAAA 8671 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.0 36 ATTAGAATTTACTCCGTTGGGGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTTCAAACAGACGCTGGTAGGATCAAATTTAGCAATGAAGCCGTGCAAAAGATCGAGCTAAAAATGATCTCGCGCCTTTGCGAGACGCTCAAGGTGGGCGACCGCGATCTCACGTGGAGGCAAGTGATCCGCCGCGAAGCAAACAAGCTCAAAAAGTGCATCTGCGAGGACGCACCTTATGAGGGCTTTACGTGGGAGTGAAATCGCATTTTGATAAAGCGTTTTTTAAGATTTTAAAAGCTTGAAATTTAGGGCTTGGTGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAATAAATATAGACTTCTTGCACTAAAAGGCTTAGAAAATGGGCTTTTTGGTGCT # Right flank : CAACGCATAAGCGACAAATTTAAAAGTCAAAAATTTTCAAAAAAGAGATTTAAAATAATAGATCAAATAAATAATAGTTGCTATCTTGCAAAGATGTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAACAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGGGTTTGAAAC # Alternate repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 75922-76265 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYU01000090.1 Campylobacter concisus strain AAUH-58UCo 1106687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 75922 34 94.1 41 .T.G.............................. ATGAGATTAGCAGTCAGTGTAAGTAAAGCAGTTGAGCAGTT 75997 34 100.0 47 .................................. TCCGCGCTTTTTGAAGTGATCGGATACACATACGGAAAAAGTGGGTT 76078 34 100.0 43 .................................. CAAATATGACAAACATTATTAGGGTATTTGCACATTTGGCGTT 76155 33 94.1 43 ...........-.C.................... AAGATGAGCAAGCTGGAGGACAAACAGAGCCAAAAGCTTCGTT 76231 34 88.2 0 ..........................AACA.... | T [76262] ========== ====== ====== ====== ================================== =============================================== ================== 5 34 95.3 44 TCAATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Left flank : TTTGAGCGTCCATTGCTTTATCCTTTATACTCTAAAGTTTTTTATGAATTATACACAATATGTCCATACGCCACTTTATAATTCACTCAACAAAACAAAATAATTCAACACAAAGGGGTTAAAATGGCAAAATGCTATTCACGTTCTTACTCAAAGTCTTCTTCATCATCAAGCAGATCTTACTCATCTGCTCGTGCTCACCAAAAAGTGGGTCAAAGCTTTGGTGGCTATACCAAAGTCCAAACCACTAAGGGCACATTTCGCATGAAGCCAACTTCTAAATAGTTGGCCCATGCAAGCCATGAAGCAAAATTCATGGCTTATTTGAAGTATCTTTTATTTATCTACGCAAATCACAAAACCTATCATTATTACAGTCCTTCATAAGCCTAAGCCAATCTATTCTTATCTAAATTTATCCAATAAGCGCATATAAGCACTACTCATTTATTTTTTACAAATAACAATATAAGCCACCACATACACTTTATCAAATTTCA # Right flank : TAAATAAAAGAACCTATCTTAAATATCTTTAAAATCACGAATTTTCGAAATTTTAGCCAAAAAGATAGAAATTTAAACTAAAAATAAGAGCGATAAAGGTATGCACAAATATATAAAAAATAATAATTTTTAAATAAAAATCTAAAAAATATAAACATTTGCCTTTAAATCATATATAATAAGATAATTTGAAAGTTGAGCATTGAAGTGAATAATGAAACTAATATGATTTTGACCTTTTCTAGTGATATAAGGGCGATAAGAGATAGTCTTGGCGTGCTGATAAAACTACTAGAGCTTAATAAATTTATCCCCAAACTTAAAATAAATAGAAAAAATGCTCTAAAAAAGAGCATGGTGGGCGCGGTTTTAGACTATGTGAAGATAAGGAGTTTAGATGAGGTATGCCGAGCTTAGAGTGAAATTTGAGCCGTCACAAAAGCCGCCATTTTTTATCGGCTCGCAGGTGCGAGGAGCCTTTGGGTATGCGCTAAAAAGCG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 96287-99803 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYU01000090.1 Campylobacter concisus strain AAUH-58UCo 1106687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================================== ================== 96287 33 100.0 46 ................................. TCGATTCTCTCTTTTGGGAGAGAAATTTTTTGAAAAATTAGTATTA 96366 33 100.0 46 ................................. ATGCCCAGTATTTACGGTCAATTAAGACCATTAAATAATATAATTA 96445 33 100.0 42 ................................. AAACTCCTAGGAGTAGAAATTCAAACACTGCCTGAGCTATTA 96520 33 100.0 40 ................................. GCTAGCACTACAGCAAGAACCGCCGTCATGACAAACATTA 96593 33 100.0 41 ................................. CACTAGCTTTGCCGTTTAGGTGGCGCACACTAACTCCATTA 96667 33 100.0 41 ................................. AGCTGTTATTTTAAATAGCTCAGAAAGTTTGCTGTAAATTA 96741 33 100.0 43 ................................. GATCAGCGCAGTATTGCCCATGATAAACACACCAAGCGAATTA 96817 33 100.0 44 ................................. ATGTTGTAGATATTGCAGACATATCTACTATCCCAACTAAATCT 96894 33 100.0 42 ................................. TTATGTATCTCTGAGAGTAAAGGTTGATAATAAACCTCATCT 96969 33 100.0 45 ................................. ATTGATAAGAACCATGCTGAAATAATCAGCATCATTCTCATATCT 97047 33 100.0 43 ................................. TTCACGATCAAAAAAATCTTATGGTGGAATTTGGGTTTAATCT 97123 33 100.0 63 ................................. AAAACCTGCCAATCAACTCCAAATTGAGCCCTCTAGCTTCAGCTGAAGCTAGATGATTCATCT 97219 33 100.0 45 ................................. AGCTCGATCCCGAGTACCTCAACAGCAAACTGCAACCCCCAATCT 97297 33 100.0 41 ................................. GTAAAATTCTCTTCTACGCTATCTTGTAGCTGAGCAAATCT 97371 33 100.0 41 ................................. ATTCTTACTTGTTTCTGTACAAGTTCTGGATTATTTAATCT 97445 33 100.0 44 ................................. ATTTCGTTTGCACTTTGTTTTTGTTGATTGAAAACATCATATCT 97522 33 100.0 54 ................................. TCTAAAAAGTCAAAGCTAGAATAGGCATTTAGTCTTAGGATTTGATCTGGATCC 97609 33 100.0 41 ................................. GCAATTTTTCCGAAGAATGTAATGTCTATAAACATTAATTA 97683 33 100.0 39 ................................. ATTTTCTTGGTTGATCGCTTTCGCATGAATTTTTCATCT 97755 33 100.0 41 ................................. ACTTGAGCACCGTTATTGTTAGTGTATTTTCTACTAAATTA 97829 33 97.0 48 ............T.................... ACCCATTTACCTATACTAGGGTCATATTTGCCTGCTCTAGAGCTATCT 97910 33 97.0 41 ..................T.............. ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAAATCT 97984 33 93.9 47 ..............A...T.............. TTATTTACGTTGTCAATTTCTCCAGCAGCAAAAGCTACACCTAATTA 98064 33 100.0 38 ................................. TGACCGAAACAAGCTCATATTTTTCGACTTCAACATCT 98135 33 93.9 44 ...........T...A................. ATCCATCCTTCCCACTCTTGGCTACCGTAGCCATCATAGTATTA 98212 33 100.0 47 ................................. ATGGCTTTCATAAGTTTTTGATCGATTTTTATTTGCATATTGCATCT 98292 33 100.0 45 ................................. ATGGGGTGTTCATTTTTACTCCTTCAAAAAAATAAAAACAGATTA 98370 33 100.0 43 ................................. ACACAATACAACGAGCGGCTATCCTTGAGCCTATACGCAATTA 98446 32 93.9 40 .....-....C...................... TAAGAAACACTGATGTCAAGAGCATTAGACATATCCATCT 98518 33 100.0 48 ................................. TATTTTTGTTCTGATGAGAGGCAATTCATAAAGTTCTCTTTTGTATCT 98599 33 93.9 47 .............T..................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 98679 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 98759 33 100.0 38 ................................. TGACCGAAACAAGCTCATATTTTTCGACTTCAACATCT 98830 33 93.9 46 ...........T...A................. TATGCCTGCGGTCATCATATTTGATCCAGCCACCTTCAATATATTA 98909 33 100.0 42 ................................. CTTCAAGACCTTCACGGTCAACTTGAACGTCAAAGTAGATCT 98984 33 100.0 44 ................................. ATCCATCCTTCCCACTCTTGGCTACCGTAGCCATCATAGTATTA 99061 33 100.0 42 ................................. ACTGCACGTTCAGGAAGTGTGTTAAAAAAGCTCATAAGATTA 99136 33 100.0 41 ................................. AATTGTCCTGCCTGAAAATCAGTCCATTCGTCTTTGCATCC 99210 33 100.0 48 ................................. TATTTTTGTTCTGATGAGAGGCAATTCATAAAGTTCTCTTTTGTATCT 99291 33 97.0 47 .............T................... TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGCATTA 99371 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 99451 33 100.0 47 ................................. TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGCATTA 99531 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 99611 33 100.0 47 ................................. TTCATGATGAGTCCTACATTCTCCTCTTTACTAACAAGAACGCATTA 99691 33 97.0 47 ................................A CCTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCT 99771 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= =============================================================== ================== 46 33 98.8 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTATTTAGATCAGATGGATAAATTCCTCGAACTTAGCGGCATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTAGCTCACGTGAAGCCTGCGAGCAAGGGCTTGCTAGGCTAAAGAACTTTTTAGCAACCATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGATAAGCATAGGCGAGGATAAATTTGCACGCATTTTAGCAAAACTCACATCCTCGTCCAAAAAGCCAGAGATCACCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : TAGACATATCTATCGAGCATAGTTCTCAAGCATTAATTCATAGATACATTTCATTTTAGCTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCGTCATTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //