Array 1 1266900-1269124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030219.1 Salmonella enterica strain SA20021456 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1266900 29 100.0 32 ............................. TGGCGGCATAATCACCGCATTGCTGCCCCCCT 1266961 29 100.0 32 ............................. TTATACGGACAGAACGACGCAATACCGGTTTT 1267022 29 100.0 32 ............................. CGACGAGGAAACCCGCGCGGACTTTGAAAACC 1267083 29 100.0 32 ............................. AAACTGAGTAAAAAAGAAGTGGCGGTGCTTAC 1267144 29 100.0 32 ............................. CCCTTTTGCCGGACAGTGGATGCGGCGTTGGG 1267205 29 93.1 32 ........T...................T AGTACAGAATAAGGATGAATACGCCCAGCGCC 1267266 29 100.0 32 ............................. CTTCATACCTTTAACAGCACCTTCCGGGCTGT 1267327 29 100.0 32 ............................. GTACAGTTGGAGCTCCACGGACCGCCCACGGT 1267388 29 100.0 32 ............................. GTAAAATAGTAAAAATACCATCAAATTATAAT 1267449 29 100.0 32 ............................. TATCAATCGGGTCAACACAGTCACTCATTGTT 1267510 29 100.0 32 ............................. GTTATTGTCTGTGGCTACGACAGCAAACTTTA 1267571 29 100.0 32 ............................. AAGAGTGTCACCAATCCGCCAATAGCAGGAGT 1267632 29 100.0 32 ............................. ATGCGATGGCGTCATAGAACTCCTGAGCTGTA 1267693 29 100.0 32 ............................. GAATTGTACCACAAATAGGCACCCCGTTATGG 1267754 29 100.0 32 ............................. TTTGGGGAAGAATCCGAAAAGGAAATTAAATC 1267815 29 100.0 32 ............................. CGCCACAAATTTTCGGCGTTACCACTGGTTCC 1267876 29 100.0 32 ............................. AATATCTAGCTGTATCTGTTCAGAAACGTTAG 1267937 29 100.0 32 ............................. CTAACCGCATTCATTATGAATGGCTTGCACCA 1267998 29 100.0 32 ............................. AACTAGAGTACTGGGTGGAATAATGAAATCAC 1268059 29 100.0 32 ............................. TTAACCGGGCTTTTCTGACTGTCAGTAAACAG 1268120 29 100.0 32 ............................. CTGATTTTGTGGATGTGATGGAACTGGTTAAC 1268181 29 100.0 32 ............................. CCCCCATCACTGTATTGTGTATAGTAGTCCTC 1268242 29 100.0 32 ............................. CGCAGAATCAAGAGAAACTCGACAAGGCGTAA 1268303 29 100.0 32 ............................. GTCTAACCCTGCTTGCTCACTTTCTCGCGGTG 1268364 29 100.0 32 ............................. ATATAGAGGAAATCACCACCAGGCTTAATTTA 1268425 29 100.0 32 ............................. GGTGAGGTACAGACCAAAGCGCCGCTGGACAG 1268486 29 100.0 32 ............................. CCGGAAAAACCACAGGCCAGCTTAATGCGATG 1268547 29 100.0 32 ............................. TAAATAAGGCCATTTCGACTCTGTGGACGAAG 1268608 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 1268669 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT 1268730 29 100.0 32 ............................. TTGTGCATTGATTCTGAAAATATAATCCGTTC 1268791 29 100.0 32 ............................. ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG 1268852 29 100.0 32 ............................. GAGAAAACCAACGCATGAACAGTTTAACGGTA 1268913 29 100.0 32 ............................. CAAAAATTCCAGTAAAAACAATGGATGCACTA 1268974 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 1269035 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 1269096 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAATCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //