Array 1 173905-173037 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNF01000003.1 Photobacterium kishitanii strain FS-7.2 CFSAN065468_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173904 28 100.0 32 ............................ AATCCACCGTGTAATTTTTTAAACCTGCGCAC 173844 28 100.0 32 ............................ AAGCTACGTTGAATTTATAATCTGCTTCGTTA 173784 28 100.0 32 ............................ CTTAGTGAAGAACGCGGTCTTCACGCTGGCAA 173724 28 100.0 32 ............................ AATTAATGACAAATAATCTTCAAACCAACCAA 173664 28 100.0 32 ............................ GGCTGATGTCTACAACTATGCAATAGTAGAGA 173604 28 100.0 32 ............................ ACCTAGCATCATCACTTTCACTTCAACATCAA 173544 28 100.0 32 ............................ ACACGCACACATGCTTTTTGCGAACATTTGTA 173484 28 100.0 32 ............................ CAATGCTTGCGTATATTTTTTTGCGAAAGCAT 173424 28 100.0 32 ............................ CTTAAAAAACAAACAATACATTTCAGCTAATC 173364 28 100.0 32 ............................ ATTAACTAGGTAGTCAATAACACCAGTAGAAC 173304 28 100.0 32 ............................ ATTCTGGAATCAGCAATGCTTGGTCACTCAGT 173244 28 100.0 32 ............................ TATAGAGAAAATTTTATAACAGAAATCGTTAA 173184 28 100.0 32 ............................ GTCATTGACTACACCCAACATTTTTCTGTTAA 173124 28 100.0 32 ............................ ATATGAGACCCCATTAAAACCATTAAATCGAT 173064 28 92.9 0 .......G.........C.......... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCACCGCGCAGGTGGCTTAGAAG # Left flank : CAAAAGCAACTATCTAAAATACTTTCTGTTGTAGTTGATAGTCAGGAACATAAGCGTAAGCCTCGCCCAATACGGTCGGGGCAAAGCAATTAACGTGCTGGATCTGCAAATGCATTTGCAGGTTATGCTCGATGGCACGAGCTTCAAAAAAGTATTTCACAACGAGTACGACAAGCAGGCATTGGTAAAAAGGTCGTTCACCGCCGCGCAGGTGGCTTGAAAATCGGCAACAATATACTATTTAATCAGTGTAGAGCTCATTTTCGTATTAACAAAAACTATTGTCGCAATATTAATAAACTCAAAAAAAAGTTTAAACTACACTCTAAAATGAATCCGAAAACACAGAGAAAAGACACTATGTCCATTTGACCCTTTTTTATCTCATCAAACCACAACTTTGTAAATCAATGAGTTAGAAGACAAAGAATAAAAAGGGTATTTTGCAAGAAATGGAGTATTGCTTATTTAAATCATAAGCTTAATATAATATCTCTACA # Right flank : CGAAGTGATAATTAACAAGCCCATTAAATATTTTTTTGTATTTGTCAGATAAATGTAGATACTCGAATTTTTCATTAACAAAACTCAGGCTACAGTCGCCAATAATTAGCCCGTATTTATCTCCATCAAACTCATACCAGTGAACAACCTTTTCAGGTATATCAGATTGAGTTTGGAAGTAAAGTGGGAAAGCGCCTCATGGTTATCTTTTTAGTTGAGACGCTTAAATATTCTATCGCTTTAGCTGCATCGGCGGCTTCCTCTTGTGCTTCGTATTTGAATATATTTCAGCTATTCGGGCTCTTGCTTTTTGACTCACATTTGCCATATTGCCCTCCAATACGTCGTCTATCTCGTTGTACGACAATTGAAGTGCCACTTCATCAGCGACTTGTGGTTTTCCGTCTTCCAGATCTGCCGTTGGAACCTTGTTAAATAGCTGTTCAGGAGCACAAAGGTATTGAGCAATAGCCCTTACCTTACGTTTGTTAAGATGAGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCACCGCGCAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 206406-207389 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNF01000003.1 Photobacterium kishitanii strain FS-7.2 CFSAN065468_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================== ================== 206406 28 100.0 32 ............................ ATGAAAATTTCGAAATGTTACAAAAAAATAAT 206466 28 100.0 32 ............................ TTTAAAGAAGAAAGAAATAAACTAAGATGGCA 206526 28 100.0 32 ............................ GTTTTCGCGAACATATATGTTCGTTTTAGATC 206586 28 100.0 32 ............................ ATGCTAATGCTTGCGTATATTTGCGCAAGCAT 206646 28 100.0 32 ............................ CATATACACGGGTACTCTGTCCCTGATTCGGT 206706 28 100.0 32 ............................ GTGGTCGCTTGAATCGACACCAATCCCCGAGA 206766 28 100.0 30 ............................ TAAGTGTAAGTTAAAAGCGCAACACAAAAA 206824 28 89.3 33 ...T.........T............G. TGTAAGAAATATTGCTGTATTTGCCCCCACGTA 206885 28 89.3 32 CA.....G.................... TTTAAGATTGATATGTTCATCTTTGAACACAA 206945 28 89.3 32 .......GT........C.......... TAATAGAATTTGCTGTTTGATTAGGTCGCGGA 207005 28 89.3 32 .......G...T.....C.......... TATGTGACCAACAGCTAAGCGATTGATTTTCC 207065 28 89.3 114 ............A..........T..T. TACTCTTGATTTAAATCGCAACGAACGCAATGCTTGCCGTAGAATTTACTTTATTGTAATATGCACAATGTTGCATCCTTGATTAAAAGATCCCAAACTGCGTCGGTTGAAATA 207207 28 82.1 127 A..T.......T.....C.....G.... TGCTGACAAAGATAGAAATATTGGATATGTTCTGCGGGTTGGTGCAAATAGGTGGCTTGGTGTAGTATACACTAATATCAATTACTTACCGCCGAGATGTGGCTTAGAGGTATGATTGTTGCTGGTA 207362 27 85.7 0 .............-...C......C..A | A [207364] ========== ====== ====== ====== ============================ =============================================================================================================================== ================== 14 28 93.9 46 GTTCACCACCGCGCAGGTGGCTTAGAAG # Left flank : ACACTGTTGTGGAAGTTTTGCGTTTGAATCTCATTGTTGAACAACATCCCTCGATATCCTGTTTTTTTTTCGTCATCTCCACTGTATCTACTGTGTAGTGTTTGAAGAATTTCAGGATCAGTTATTTGTACATTGTCTTCGAAAAATCGTCTTAATAATGAATCAGCATAGTCAAAGTTTGGCTCGCTTCCGTAGTAATCATCCTCATCGTCGTACATATTTTTCTTAAAGTTTATGAAAAAGCGAAGATTTGTTCAAAAATAACTCCACTAGCCGTTAGGTCGCAATGCTAATAAACAAAGAATAAAGTGTGAACTACACTCTAAAATGAATCCGAAAATACACTTTCAACTAAAAAGAACAATTGTTGACCCTTTTTTATCTCATTAAATTACAGCCATATTAATCAATGACTTAGCAGACACGGAATAAAAAGGGTATTTTTGCGAGAAATAGAGTATTGCTTATTTAAATCATAAGTTTAAGATGGTATCTCTACA # Right flank : AGATAAGCTTATTCTTTTGTACAGGTTCTGAGGAAATATCATGGATCAGTGGAGTGGATACAAAAAACCTGAAATTATTGCTGATTTGGATAAGCTAGACTCTGCTCCAGTCGAGTGCGATGGCTTTGTTCGATTAGCAGCGAAGGTCTTATTTCGTCATGGTCAAGATTTTGAGGTGTTTAAAGGATCAGTCCACTCTAGATCTGGCGGTTATATTCCACTGCATTGGTGGATTGAGTCCGGCGGCTATATTATTGATTATAGGGCTCGACTATGGATGGGCGATGATGCTCAGCATGGATTACTAGATAAGGAGACCGTTGGTGATTTGTATACTGGCAGTCCAGTTCATTTTCCTCTAATTTCAGATAGCCTTGAAGTAATGTTATTGCTTGATTTTTAGCCTGTTGGGCTGGCGCTTTGGTATGTATATATCCTTCTGATTATCTATTGTACATGCAACACTACAACACGCATTTTTTGCTTGTTAATTAACGAAC # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.20, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCACCGCGCAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 217585-216957 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNF01000003.1 Photobacterium kishitanii strain FS-7.2 CFSAN065468_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 217584 28 100.0 32 ............................ ATATTCACAATACCAATTTGTCCCCGGTCCGT 217524 28 100.0 32 ............................ CGTAGAAAAGTAACAAGTATTACTTTTCCACA 217464 28 100.0 32 ............................ AACCTCAAAGAGGAACAAGAGAAAAATAGCGC 217404 28 100.0 32 ............................ ACTTTGTTGTTTAGTTCTTTTACGACATCTAC 217344 28 100.0 32 ............................ CAGATCACAGTGGTGACAGCGGCAAACCCGTC 217284 28 100.0 32 ............................ CACAGGACTAATTAACACCAAAACTCTTTGAT 217224 28 100.0 32 ............................ TACAGCGATTTTTTGTCCTAACCCCCGAGACT 217164 28 100.0 32 ............................ ACTGCCCATAGCGAATGCAATCATGCTTTTCA 217104 28 100.0 32 ............................ TTTGTCATGTTTTCAGCTTCAAGGTGCGCTGT 217044 28 100.0 32 ............................ AATAAGAAACCAATGTGGTTTCAACTTGGAAC 216984 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACCGCCGCACAGGTGGCTTGGAAG # Left flank : ATCTGTCCATGTGAGTTAAAACGAGAGTTTTAACCTCGCCGCCTACAATCATTTTTAAAAGTTTCGTCAGACCTTTTTTCTTGCAGTTTAGACCGCTGCCCAGATCTTTTATCACTTCATCGCAGCCAAACTCACTCAATCTCACCGACTGACGCTCTAAATCAGCTTTCTGATCATGGCTTGAGCATCGAGCATACCCGATAATCTTGCGTGTTTTAGATGAAATACCGAGCAGATTTTCAATATCCTTAATGCTGAACCGCCTGTGATCACCAAGCGTTCTATGTGACGATTTGAATTTACCTGATTTATCCCAACGCCTTAGCGTTGGAACGGAAACTCCAAGGATTTAAAGCACGATGTCCATTTGACCCTTTTTTATCTAATCAAATTACAACCATGTAAATCAATGTGTTAAAAGATGGGGAATAAAAAGGGTATTTTATTAAGAAATAGAGTATTGCTTATTTAAATCATAAGTTTAAGATAATATCTCTACA # Right flank : ATATTGTTAATATAAACAAAATAGCGAAAGCCGCATCAGAGCCTGACAATGTAATTGATCGTGCCGCTGTCATCACTGATATTTAGCGATAGTTTGAGCGAAACTTTGATGTAATTGTTGATGACAACCTATTGCACAGAAATTAAAACCTCTTATCATGACTAAATAGTGTCCACGTTAAGATAGTTAAAGGTAATGTTTTGAAAAGTTTGTCTTTAAAAGAAAGAATGGCATCAGACAGTAGTTGGGGGGTTTTCGTGTCAAAAGACACCTTCAATGAGATTATTGACTCTCAGATTGATTTCAACAATCGATATAATGTTAAAAATAAAGAAAATTTGAATGAAATTTTAAAAAAGAAAAAAGAACTCGGTTTTGAAAAATGGAAAGCAGTTGTAAATCAACAGCCGAGTATGGATATTGAGGCTGCAAAAGCGTGGTCAAAGTCAGGGCAAATTAAAAAATAAGTGTGGTTCACCTCTGGGTTTGAGAGTATAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGTGGCTTGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 4 363462-362115 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNF01000003.1 Photobacterium kishitanii strain FS-7.2 CFSAN065468_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 363461 28 96.4 32 .......A.................... ACTGACCTTGAGAACAAGGCAGCCTTTCCCTA 363401 28 96.4 32 .......A.................... TGAGTACGAGTGAGTTAAGCCGTATGTAAGAT 363341 28 96.4 32 .......A.................... TGATGTTGGTCGTGCGTCTGGTCACTGTGGAA 363281 28 96.4 32 .......A.................... GCAAGACGTGCTGAATTTTTGGGAATGTGCGA 363221 28 100.0 32 ............................ ACTACACAAAGATTTTATTGAGGCAAGATCCT 363161 28 100.0 32 ............................ TAAAAAACCGGCTCTAGAAATGCTGCTATTTC 363101 28 100.0 32 ............................ ATTAATAGGTTTGTTTTGTGATTTCAGTTCGT 363041 28 100.0 32 ............................ ATGATTTTTTTACCCATTGAATGTTAGTTTTG 362981 28 100.0 32 ............................ GAAGGTACGCGATATACAGTTGTTTTGGAATC 362921 28 100.0 32 ............................ TCACATATCAAAACAGAAAAATAAACAGTAAC 362861 28 100.0 32 ............................ TGACGATTACACCGATGACATGGTATTTACAA 362801 28 100.0 32 ............................ GAAATCGTTCAACGATTTACGTTGGCAACAAG 362741 28 100.0 32 ............................ AATAGTATACTGGAAATTCTTGAAAAAATTGA 362681 28 100.0 32 ............................ TAGACGGCACGTTTCCATCGCTACGTCATGTT 362621 28 100.0 32 ............................ TGTCAATTATGTGGTGAGCATGTTCATGTTAT 362561 28 100.0 32 ............................ TGTCAATTATGTGGTGAGCATGTTCATGTTAT 362501 28 100.0 32 ............................ AATGATTTGTTCCATAAGATCGGCAACCATTA 362441 28 96.4 32 .................C.......... AGTAGCAGTTGACTTGATGAATGTTGGCATTT 362381 28 100.0 32 ............................ GTAGTTAACACCACTTTTATATATCTTACCGG 362321 28 96.4 32 .................C.......... AGTAGCAGTTGACTTGATGAATGTTGGCATTT 362261 28 96.4 32 .................C.......... AGTTAAAGAGTTTGGATCTACGAGAAGTTTAC 362201 28 96.4 31 .......A.................... TAAGTGTAAGTTAAAAGCGCAACACAAAAAA 362142 28 96.4 0 .................C.......... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACCGCCGCGCAGGTGGCTTAGAAG # Left flank : CGATGAAAGTCGAAATGTCTCTTGATTACGTTCACCACCGCGCAGGTGGCTTAGAAGTACCGCAAAATAGCGACATTCACCACCGCGCAGGTGGCTTAGAAGTTAAATAATTTTACGCAAGATGCGCAAGATAGGTTCACCACCGCGCAGGTGGCTTAGAAGTACTAGTGCACCAAACTCTTGATCCATCATGTGTTCACCGCCGCGCAGGCGGCTTGAAAATCGGCAACAATATACTACTAAATCAGTGTAGCGTTCATTTTCGTATTAACAAAAACTATTGTCGCAATATTAATAAACTCAAAAAAAAGTTTAAACTACACTCTAAAATGAATCCGAAAACACAGAGAAAAGACACTATGTCCATTTGACCCTTTTTTATCTCATCAAACCACAGCTATGTAAATCAATGAGTTAGAAAACACGAAATAAAAAGGGTATTTTTGCAAGAAATAGAGCATTGCTTATTCAAATCATAAGTTTAAGATAATATCTCTACA # Right flank : AATGCACACTTATCAACAAAAAAATCCCTTTAAAGAATAATTTAAATCAGATTTTCAGAAGATAATGTTTTATAATAAATGAATCTTGTTGGATATAAATAGGAAAATGAGATGTTTAAAAAAACATCATTGATAATCGCACTATTATGCTTGTCAGGTTCAGTTAGTGCCAAGCCGCTTCATTCTCAAAAAGATTTTTTACAATCAACTGTTTGTGCGGCTGGCAAAGTTAAATATCAGGATGACTACACTGTGCAATGTGAATATGATTCATCTGACGGTTCATCTGTATTTTCATCATATGATGGATATTCAATAACAACAACACTGCATCCAAATACAGATGGTAAATTAGTACCTAACTTGGCATTTATGGCCTCAATTGAAACAGCACTCGATTTCAACAATTCCAAACACAAAGAAAAAATATTAAATTTCTTTCAAAAATTACCTTTAGAACGAAATAAAGAAGAGATTGCAAAAAATGTTTATGGTACAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCGCAGGTGGCTTAGAAG # Alternate repeat : GTTCACCACCGCGCAGGTGGCTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 364534-363741 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYNF01000003.1 Photobacterium kishitanii strain FS-7.2 CFSAN065468_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 364533 28 100.0 32 ............................ ATTTAATTCTTCTACATATCCGTAGTTAGTAC 364473 28 100.0 32 ............................ ATTACTATCAGCAAAGATAGTGCTGGTCGTTA 364413 28 100.0 32 ............................ AGAAATCCCAAGAGGAACGTATTCTAGAGATG 364353 28 96.4 32 ..........................G. TACGTATTACAGAATGAATAGACTGTAATCAA 364293 28 100.0 32 ............................ ACCGCATAAGCAGCGATGACCGAGAATAAAGC 364233 28 100.0 32 ............................ CGTCGCTTGATAGTGCGACAGCGGCATCTTTC 364173 28 100.0 32 ............................ AAATTATGTTGCGATCAATCCTGAAAATGGAC 364113 28 100.0 32 ............................ TGTTGGAATCAATCTGCTAGTGATATCTTAAT 364053 28 92.9 33 ...........TA............... TTTTAAATCAATCCCCATCTTAACTGGATTTAA 363992 28 92.9 32 ...........T.....C.......... AAACGATGAAAGTCGAAATGTCTCTTGATTAC 363932 28 100.0 17 ............................ TACCGCAAAATAGCGAC Deletion [363888] 363887 28 96.4 32 A........................... TTAAATAATTTTACGCAAGATGCGCAAGATAG 363827 28 100.0 32 ............................ TACTAGTGCACCAAACTCTTGATCCATCATGT 363767 27 85.7 0 .......G.........C.....-...A | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.5 31 GTTCACCACCGCGCAGGTGGCTTAGAAG # Left flank : CCGCCAATTATTGCGCCTGTTAAAAATTCCATCTTCAACTCCTTAAAATACTTATATTTCACCAGTGTCATATATTAATACAAACAAACATAAACAAAAAGCATAATATAGCTATATTACAACCTCTTAGAATTATAATATAAGCACGGAGTTAATAGAAAAATAACACAAATAAGTCACAAAAACCAAACCAACTTGACACATACTCAAAGCAATTGAACCACCGATCAATTTTCTTTTTATTTACTGCAACACTTATTTTTCATGACCTACAAAAACTTTCATCACGATGCCAATAGACTCAAAAAAAGTTTAAACTACACTCTAAAATTAATACGAAAACCCAGAGAAAAGGAACTATGTCCATTTGACCCTTTTTTGTCTCATCAAATCACAGCCATGTAAATCAATGAGTTAGAAGACACAAAATAAAAAGGGTATTTTTGCAAGAAATAGAGCATTGCTTATTCAAATCATAAGTTTAAGATAATACCTCTACA # Right flank : ATCGGCAACAATATACTACTAAATCAGTGTAGCGTTCATTTTCGTATTAACAAAAACTATTGTCGCAATATTAATAAACTCAAAAAAAAGTTTAAACTACACTCTAAAATGAATCCGAAAACACAGAGAAAAGACACTATGTCCATTTGACCCTTTTTTATCTCATCAAACCACAGCTATGTAAATCAATGAGTTAGAAAACACGAAATAAAAAGGGTATTTTTGCAAGAAATAGAGCATTGCTTATTCAAATCATAAGTTTAAGATAATATCTCTACAGTTCACCACCGCGCAGGTGGCTTAGAAGACTGACCTTGAGAACAAGGCAGCCTTTCCCTAGTTCACCACCGCGCAGGTGGCTTAGAAGTGAGTACGAGTGAGTTAAGCCGTATGTAAGATGTTCACCACCGCGCAGGTGGCTTAGAAGTGATGTTGGTCGTGCGTCTGGTCACTGTGGAAGTTCACCACCGCGCAGGTGGCTTAGAAGGCAAGACGTGCTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCACCGCGCAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //