Array 1 58-635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDP01000007.1 Escherichia coli strain CVM N33443PS N33443PS_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 119 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 180 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 241 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 302 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 363 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 424 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 485 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 546 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 607 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGCGACAAAATTCTCAAAACTCGATCAGGAAAATG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1299-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDP01000057.1 Escherichia coli strain CVM N33443PS N33443PS_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1298 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1237 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1176 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1115 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1054 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 993 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 932 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 871 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 810 29 96.6 32 .............T............... TTTTGATTTCATTAACGGCGCTCCCCATATTT 749 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 688 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 627 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 566 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 505 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 444 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 383 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 322 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 261 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 200 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 139 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATTTGGGGGTATGAGAGCGCCGAGCCGTTCGGGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUDP01000149.1 Escherichia coli strain CVM N33443PS N33443PS_contig_149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 62 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 123 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 184 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 245 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //