Array 1 586939-588052 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPP01000001.1 Saccharothrix saharensis strain DSM 45456 Ga0264273_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 586939 29 100.0 32 ............................. ATCCGCTTAGCCCTCGCGTCCACCGCCCTGCT 587000 29 100.0 32 ............................. TCGGCCTGCTTCGTGTGGAAGTGGATGCCAAA 587061 29 93.1 32 ..G.........................C GCCTCCAGGTCGAACGTGGTGTCCACGTGCCT 587122 29 96.6 32 ............................C AGCAGGCCCCGGTCGGCCTCGGCGGCGTCGTC 587183 29 96.6 32 ............................C GTGGATCAGGCCCATAAGGCTCTCAGCGAGGC 587244 29 96.6 32 ........T.................... GCGTACCTCGCGTCGATCGGCTGACCGGCGTC 587305 29 96.6 32 ............................C GCCAAGGACGCGCCTGGTGCCTTCGTCCACAC 587366 29 93.1 30 ......T.....................A CTGGTGGCTGCCCAATGGCCTGTTCGCGCG 587425 29 100.0 32 ............................. TCGGCGAACTCGTTCAGCTCCTTGACGGTGCC 587486 29 93.1 31 ......T.T.................... CGGCCACCACCCGCAAGCACAGCACCTCACG 587546 29 79.3 30 ...AG.....AC............A...T CTCGGGCTTCATGGCCCGGCGTTCCTTCTC G [587563] 587606 29 93.1 33 ....C...T.................... CAGTCGCCGGTGTACTCCGTCACCAGCGGTTCC 587668 29 100.0 32 ............................. CGCTCACCAAGCTGTTCGCCGCGGTCGGCGAC 587729 28 93.1 32 ........-...................T CTCTCGTGCTGTCCACAACTCGTCCAGCCACA 587789 29 100.0 30 ............................. AAGCCATGCCCTACCTCAATCCTGCGGCCG 587848 27 86.2 27 .....--.....A...............C CACTGGATCACTGCCGCCGCCGCGCAT 587902 29 96.6 32 ..........................T.. CCGAAGGGGAAGCGCTGGCGCATGGCTGGCTT 587963 29 89.7 32 ......T.................A...C ACGTGGCGTGTCGTCGGGGATCGCATGGTCGA 588024 29 89.7 0 .........AT..C............... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 94.4 31 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TCGTCGCCGACATGAACCAAAACCCGAAGTAACCGGCGCGTCCACCCCTTCGACCGGCATCGACATACAGCCACCCACAACTGCCCCGCCTCGGCACCGACGTCGCTGTGGCAACGGCCAGCCAACCCCGCGGCCAACGTCGACACCCAACGTTCCACAACCGCCCTGACCAGCAAGCGCCGCACCTAGATTCGACCAAGTCAGGCGCTCGTCTCGAACCGACGACCTACAGCGAGGTGTGCCACACGCACCGGCCGTAAGACACAGCGTGGAGAACACCCGGTGATCGTCACACCCGAACGCGTCATCCGACGGGAAAGGCGCACTGGGCCGCGGCACGCATGCACTACAACGACGCGAGACATCGGCGCACTGTGCCCTCCGGGGGTAACCACAGCTGACACAGCGTCACCACGCCAGAGCGGAACAGCAGTCGTCCCTACCCGACCAAACTGAACGAAAAACGGCCATCCGCCGTGTATCGTGGCTGGTCAAGGAGT # Right flank : GTATACAGAGTTCCGGTTGCATAACGGCCGGGCCTTTCCCGTGCGAGCGAAGATCCCGCGACTGCGGCACGCTTCAGCTCTGCCACCATGATCTTCACGGCCCCGGTGGGGGTGGGTTATGTGTTGCGTGGTGGGGCGAGGGTGAGGAGGCCGCAGCCGTAGGCTTTGGCGCGTCCGATGCCGGTGGTGAGGGCGTGGGTGAAGGCGATGTGGTCGGTGATGATGAGGTGGCCGTCGAAGCGGACTGGGTCGATGGTGATGGTGGTGTTGTCTTTGTGGCCGGTCATTCTCGGGACGGGTGAGGGGTTGACGTCGGGTTGGCCGTCGCGGGCGGTGGGGATGACGAAGCCGTGTTGTTCGCCTTTGCGGATGAGCCAGGTGATCTGGTCGTCGGGTTGGTGGTGTGCGACGCGGCGGGTTTTGCCTTTGAGTGGGATGGGGCGGGTGTCCTGGGTGGCGTTGGCGAGGAGTCGGAAGGACAGTTTGCGGCCGGGGGTGAT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 597222-597983 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPP01000001.1 Saccharothrix saharensis strain DSM 45456 Ga0264273_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 597222 29 100.0 32 ............................. CAGTCGGCGGCTGCGCACAGGCCGATCTGGCG 597283 29 100.0 32 ............................. GAATACGTCGTGTCCGCGCCGGGAACCAGACG 597344 29 96.6 32 ............................G TCCATAAACGACGAGCCCAGGGCCCACGATCC 597405 29 96.6 32 ............................G GCGGACGCCGGGTCGTGTCCTTCGCCGTCGAC 597466 29 93.1 32 ...................A........G GCTGGCTGTGGGTCGTCGGCAAGGTCGTCACC 597527 29 96.6 32 ............................A TCCACGACCCGACAGCCGGCGTCTCCGTGCTC 597588 29 100.0 32 ............................. AGGACCCGTACGCGCACCCGGCCGTGCCGGTG 597649 29 100.0 32 ............................. AGGACCCGTACGCGCACCCGGCCGTGCCGGTG 597710 29 100.0 32 ............................. AGGACCCGTACGCGCACCCGGCCGTGCCGGTG 597771 29 100.0 32 ............................. CGCCTGACCTGCTCGGCCGGGTCCATCGCGGC 597832 29 93.1 32 .......T....T................ AGGAGGTCGACCTGGCGCACGGTCTCGTGCCG 597893 29 89.7 32 ....................AA......T GAGGCTCGAAGCGCTGATTTACAAGCGGTTCA 597954 29 93.1 0 .......T....................G | G [597971] ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GCGGCGACCTCACCCGCTGGCTCCTCGAAATCTCCCCCGGCGTCCTCGTCGGCAAAGTCAGCAAACGCGTCCGCGACCTCATGTGGGCACGGGTCATCGACATGGTCCGCACTGGACGCGCCATCATGGTCCACCACGCCGACAACGAATAAGGACTCGACTTCAAGGTCCACCACCACACCTGGCACCCCGTCGACTACGACGGCGTCCAACTCATGCTCCGCCCCGCCGACCCGCAACCCGACGACACCACTCCCGCACCCGGCGGCAAAAACTGGAGCACAGCAGCCCGCCGACGCCGCTACGGCAACGCTGAACCTCAACCGGTACAGCGCGACCACCCTCGCCGACAGACAACCCGCCGAGACCCGCCAACCGCGACCCTCCGCCAGCTCCGAAGCGAGACACGGCCACTCTAAGCTACTCGGCGGCCCGTGCGTTCCCCGAGCAAACCGATGCCAGAAACGACTCCGCCGCTGTAACGTGCCTGGTCAGGAAGT # Right flank : GCCCGTGCTCGACGCCATCGGGACGGGCAGCACGTCTTCCCCCGCTGAATCAGCCGCAACGCCCAGGCCGCTCTCTGCGCTGCGCCGACGGAAGTCGGTGATGGACCAGGTCCTCGACGGGTTGGGCTACAGCCCCTGAGCCTCCGGCAAGAGCTCTGCGAAGGTGGCTCTGACTTCCCGCGCGGTGTCGGCGAAGGTCTCCGGATCGGCGGCGGTGAGGTGCTGGTAGATGACCATACTCTCCGAGAGAGTGTTCAGGACTTCCGACATGTCGTCATGCATGTCGTATTTCGACGCGCTCAAGGCGTACAGGGCTTGAGCGAGGCGCGGCAGGTGGGCAGCCGGGTCCGCTCCGGCCAGGCGTCTGTGGATGTCGACGGCTTCCTCGACGGCGAACCGGGCCTGCAGTTCCCGGTTGCACTCGGAGAGCATCATGCTTCAGCGTCACGGACTCCTCCGCGGCGGCGAGGGCGTCGGCGAGTCGGTCGACCTGGAGCAGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 599089-600952 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPP01000001.1 Saccharothrix saharensis strain DSM 45456 Ga0264273_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 599089 29 100.0 32 ............................. CTGGTGGAGAAGCTGGCCGAGCTGACCGGCGT 599150 29 93.1 32 ......T.....................C CCATCACCTACGCCGAGTTCAGCCGCCGGATC 599211 29 100.0 32 ............................. GAGTACCCGCTGGACCGGGTGGCGGCGATTGC 599272 29 96.6 32 ............................C GCCTTGGTGCCGATGCGCGCGGTGCCGCAGTG 599333 29 100.0 32 ............................. CTGACCACGGACGGCGAGCTGCGCCAGGACCA 599394 29 96.6 32 .....................C....... TCCTTCATCTCCTGCAGGGAGCGACCGGTTCC 599455 29 100.0 32 ............................. TCCTTCATCTCCTGCAGGGAGCGACCGGTTCC 599516 29 100.0 32 ............................. GTGATCCGGTGGATGTACCGGCAACTGTTCGC 599577 29 100.0 32 ............................. TCCACGGGCAGGGGTTGCGGTGTACGTACACC 599638 29 100.0 32 ............................. CGGGAGTGGCGGCGCAAGGTGGACGCTGCCGA 599699 29 96.6 32 .....................A....... GTGCTCGGCCTGGAGATCGTCTACCCGGGCAC 599760 29 96.6 33 ............................C TCGGCGCGCAGGTGGCGGCTCGTGACGCCGAGC 599822 29 100.0 32 ............................. CGGCGGCCGTACCTGAACGTCGAGAAGACCCG 599883 29 96.6 33 ............................C AGGACAAGGTTGCTGAGCCGGTGGGGGAGTTGC 599945 29 96.6 32 ............................C TGCGAGGAGTTGCCGAACAGCTCGTAGGCCTG 600006 29 96.6 32 ............................C CCGCAGTCGTTCGCCCCAACGTCCCTGGCCGA 600067 29 96.6 32 ...................A......... ACCTGGCGCTGGCGGACCGCGTGGCGAACGTG 600128 29 96.6 32 ............................C AAGGGCGGCCTGCGACGCTCGATCCCGTCCCG 600189 29 96.6 32 ............................C AAGGGCGGCCTGCGACGCTCGATCCCGTCCCG 600250 29 93.1 32 ................G...........C GGGTTGCGGTAGCCGAAGTCCACCGCCCACCA 600311 29 100.0 32 ............................. TTCGCGACGGTGCGCCGCTGGTGTTCGGGTAC 600372 29 100.0 32 ............................. GACGTGGTCGAGGTCCGGGTGATCCGGACCGA 600433 29 96.6 32 ............................C TCGCCGAACACCTCGCTCAGGTCGGCGAGCCG 600494 29 100.0 32 ............................. TGCCGCTCCCGCAGCTGCTGCCTGAGGGCGGC 600555 29 100.0 32 ............................. CAGCGCCGACTCGGCGTATGCGACGCGGTGGT 600616 29 93.1 32 ...........................TC GCGCCGATGCCCGTCGTGGCCTTCGTGCCGAT 600677 29 100.0 32 ............................. GCCGGCCGCACCTACACGGTCGAGACCTCGAC 600738 29 93.1 33 .......................A....C CCGCTGGCCCGGATCGCCCGCTTCAACACCGAG G [600760] 600801 29 96.6 33 .....................A....... ACCAACGGCTCCGGCGCGGCCACCGACCGGTTC 600863 29 96.6 32 ......................C...... AGGACCCGGAGCTGGGCGGCCTGATACGCGTG 600924 29 75.9 0 ............TA.......CGA...TT | ========== ====== ====== ====== ============================= ================================= ================== 31 29 96.9 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GCACCAGACGCAGAACGCGCCCCCGCCCGCTGAATCGGGCCGTCAGCAGCACCAACGCGACCGCTGCCTCGCTGCACAGCGGGTATACGCCCGTCAGGTTCACCACCACCGTGTCCGCTCCGACAGCAGCAATCGAGCGAAGCCACTGCTCAGAGGCAGCATTCTCGAGTAGGTCACCGCACCGGCCACCCACAGCACCACGGCGTCGTCGGCGAGCTCGCCCAGTTCGATCGACCAGCGGCGCACACAGCGAACGGGAGGGCGATGACCCCTGGGTCGCTTCGGCCGCCCCTGCCCGGCGGGGGCCCACTGCCCGTCGCCACAACAGGCGAAACTCAGGCTCGCCGTCGGGTCGGAGCACCGTCGTGAGGCTCCTGCTGAGAGTAGCCAGCGGTCGCTACAGGTCGGTCAATACACCACAGCCAATCAGCAGTCTTCCCCATGCGACCAAACCGAATGAGAATCGACCATCCGGCGTGTATCGTGCCTGGTCAAGAAGT # Right flank : TCCTCACGCGCGCGGCCCGTCAGTCCATGGCCACCCTCGTCCAATCACGGCATGCCAGCGCGTTCGGACCGCACGCCTCGACCAGACGCCGTGCCGACGTACCCCAATCCGAAGACGCCTGCGCAGGGTCTCAGCCAAGATCGGACCCCGGTGCGCTTCCTAATGACGAGCGTCCTCCAACCGAGCCTGATGCAGGAGCGCAGCCGCCGCGTCGAATACGACATCGTCGCCACCATGAGGTGCCCTCCTCGACCACCGCATCATCCCGGACGACGACCGTCCCGTTCACAGCCCGCAACAGCTCCGGCCCGACCTCCGCCCAGCCGATCAGCAACAACGGGCCGACAGCGTCGAAGGCGGCCTTGCCGAACTGACCGGCGACCAACGGATCAGCGACGTCAACGCCAACGTCACCAGACTCGAGAAATCAAAAGGCGTAGAGCAGGCTGAAGCTACTCCCGACTGGCACCGCACACGGGCACCGGATGGACCGACCGCAC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 622395-622729 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPP01000001.1 Saccharothrix saharensis strain DSM 45456 Ga0264273_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 622395 29 93.1 32 .........C..................C GGTGTCGCGTTTCTGTTGCTCACCCCTTCGGG 622456 29 96.6 32 ............................C GGCCTCCGGATGCCCCACCCGGAGGACGCGCA 622517 29 96.6 32 .C........................... GGCACAGCGACCCGGCTGGGCCTGCGCTCGCC 622578 29 100.0 32 ............................. CTGCGCGCCGACGCGGCGGCGGTGCTGACCGA 622639 29 100.0 32 ............................. GCATGACGCAAGGCGGCCACCGCGTTACCCGG 622700 28 82.8 0 .....T..................AA.T- | AC [622723] Deletion [622728] ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : TGACCCTCACTGAAGGACGGATTGACTACCCTGGCGAGATCGCCGACCGCTGCGAAACCGTTCCGGTCCCAGGAGACAGCACCAGGATCCTCCTACTGCTCCAAGGCCGCGGCGAACCGTGGGAACAGCACCACGTCGCCCAGGTCGCGCTCAAGACCCTGCACATGCTCAGCGGCGACCGCCCGGACGACAACTTCCTGCCGCTGCGGACCAGACTGGTCGAACTCGGGCATGATGCCGCCGCCGACCTGACACCTTACGAGAACCAGGCGTAGCCAGGTGCCTGCGCGGTGCGGCTGCTCGCGGGTGCCCACTGCCCGTCGCCACAACAGGCGAAACTCAGGCTCGCCGTCGGGTCGGAGTACCGTCGTGAGACTCCTGCTGAGAGCAGCCAGCGGTCGCTACAGGTCAGTACACCACAGCCGATCAGCAGTCTTCCCCATGCGACCAAACCGAATGAGAATCAACCATCCGGCGTGTATCGTGCCTGGTCAAGAAGT # Right flank : TTCGCTGCCAGCATGGCTCTGCTGGACGTCTCGGAGCCCTACCTGTCCCGCCGTGTCGTGCAAGCGGCCGACTTCGAATCGATGGCCCACGCCGACGGGCACTGGTACGCGCCGGTCGTCGACGTCTGCAGCAGCTCTCATGACGTCGCCGCTGCTGCCGCCAGGTCGCTGAGCCTCGCCGGACTCGGTGCTCCCCCGGTGCTGGCACCCGGTGTGTCGGCACATGCCGCCGCGCGCCTTGAACGGGCATGGTGGCCGGCGAAGATCATCGACAGCGAACTGCCATGCTTATCGTTCGGTACCAAGTGCCTCGGCGGGCAGCCGGTCGAGGAGATCGGGAGATGCCGGCAGGGGTGCAGTCGACGAGCGTGAACCGCTCCCGCGGCCGGGGTGGCAGGTCGACGAACAGTCCTTCGATCTCCGCGCGCAGTGCCAACGAGATGTCGTCATGGGTGTCATTGACGCCGATGTCACTGCGGAGCAGCCAACGCGGGCCGACC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //