Array 1 95656-96965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKV01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95656 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95717 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 95778 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95839 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 95900 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95961 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96022 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96083 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96144 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96205 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96266 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96327 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96388 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 96450 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96511 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96572 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96633 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96694 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96755 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 96816 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96877 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 96938 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152719-150754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKV01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 152718 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 152657 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 152596 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 152535 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 152474 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 152413 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 152352 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 152290 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 152229 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 152168 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 152107 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 152046 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 151985 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 151924 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 151863 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 151802 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 151741 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 151680 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 151619 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 151558 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 151497 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 151435 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 151332 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 151271 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 151210 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 151149 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 151088 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 151027 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 150966 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 150905 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 150844 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 150783 29 96.6 0 A............................ | A [150756] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //